Wall clock time and date at job start Mon Mar 30 2020 00:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86797 * 120.00313 * 2 1 4 4 H 1.48504 * 109.47360 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47158 * 300.00076 * 3 2 1 6 6 H 1.48497 * 109.47259 * 59.99863 * 3 2 1 7 7 C 1.40236 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00621 * 179.97438 * 7 2 1 9 9 C 1.40787 * 119.99647 * 359.97438 * 7 2 1 10 10 N 1.33996 * 120.28810 * 355.82857 * 9 7 2 11 11 C 1.31571 * 119.89844 * 180.02562 * 10 9 7 12 12 C 1.39264 * 120.50244 * 0.02562 * 11 10 9 13 13 N 1.31947 * 120.59234 * 359.97438 * 12 11 10 14 14 C 1.32890 * 120.08444 * 0.02562 * 13 12 11 15 15 C 1.47725 * 120.25580 * 179.97438 * 14 13 12 16 16 C 1.40090 * 120.47506 * 225.72258 * 15 14 13 17 17 C 1.38229 * 118.36053 * 180.02562 * 16 15 14 18 18 C 1.39486 * 119.21156 * 359.97438 * 17 16 15 19 19 C 1.48085 * 119.55852 * 180.02562 * 18 17 16 20 20 N 1.34777 * 119.99945 * 180.02562 * 19 18 17 21 21 O 1.21526 * 119.99842 * 359.97438 * 19 18 17 22 22 N 1.32834 * 120.88607 * 359.97438 * 18 17 16 23 23 C 1.31305 * 121.79576 * 359.74337 * 22 18 17 24 24 H 0.97006 * 119.99635 * 359.97438 * 1 2 3 25 25 H 1.07998 * 119.74407 * 180.02562 * 11 10 9 26 26 H 1.08003 * 119.70418 * 179.97438 * 12 11 10 27 27 H 1.08004 * 120.81788 * 359.97082 * 16 15 14 28 28 H 1.07992 * 120.39341 * 179.97438 * 17 16 15 29 29 H 0.96997 * 120.00096 * 359.97438 * 20 19 18 30 30 H 0.96997 * 119.99730 * 180.02562 * 20 19 18 31 31 H 1.07994 * 119.65459 * 180.28773 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.7005 1.3463 -0.0006 5 1 1.8818 2.3964 -1.2125 6 1 1.8818 2.3964 1.2124 7 6 2.0076 -1.2145 -0.0005 8 1 3.0876 -1.2146 -0.0010 9 6 1.3036 -2.4337 -0.0005 10 7 -0.0336 -2.4419 0.0841 11 6 -0.6837 -3.5858 0.0840 12 6 0.0074 -4.7917 -0.0031 13 7 1.3241 -4.8064 -0.0873 14 6 2.0043 -3.6648 -0.0891 15 6 3.4786 -3.6769 -0.1827 16 6 4.2509 -2.8715 0.6643 17 6 5.6267 -2.9167 0.5388 18 6 6.1957 -3.7563 -0.4188 19 6 7.6688 -3.8112 -0.5595 20 7 8.2280 -4.6189 -1.4821 21 8 8.3734 -3.1271 0.1564 22 7 5.4339 -4.5081 -1.2056 23 6 4.1240 -4.4984 -1.1146 24 1 -0.4850 0.8401 0.0004 25 1 -1.7616 -3.5895 0.1519 26 1 -0.5392 -5.7231 -0.0017 27 1 3.7828 -2.2304 1.3966 28 1 6.2536 -2.3092 1.1745 29 1 7.6656 -5.1646 -2.0538 30 1 9.1930 -4.6551 -1.5740 31 1 3.5383 -5.1272 -1.7687 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239545353.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:03 Heat of formation + Delta-G solvation = 13.287622 kcal Electronic energy + Delta-G solvation = -19361.893987 eV Core-core repulsion = 16220.964594 eV Total energy + Delta-G solvation = -3140.929393 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.64739 -40.75134 -39.58564 -36.10041 -35.09700 -34.36462 -33.60272 -32.73669 -30.86694 -28.23408 -26.21307 -24.77273 -23.73861 -23.29927 -21.87787 -19.68033 -19.14451 -18.28820 -17.76185 -17.61833 -17.03850 -16.56781 -16.07814 -15.95356 -15.88325 -15.21632 -14.88848 -14.59709 -14.35163 -14.19929 -14.03397 -13.30195 -13.07358 -13.01003 -12.46407 -12.01552 -11.79858 -11.56010 -11.52978 -11.17655 -10.76275 -10.71817 -10.66081 -10.31102 -9.50287 -9.33351 -8.48458 -6.72000 -0.49878 0.27608 0.60658 1.05888 1.37997 1.48427 1.52707 1.76009 2.12395 2.42213 2.69035 2.89918 3.25087 3.59522 3.70688 3.96866 4.02438 4.09741 4.13567 4.37080 4.42626 4.64357 4.75353 4.86165 5.04254 5.07916 5.12746 5.40618 5.60157 5.72903 5.84631 6.03969 6.29551 6.38661 6.62656 6.76839 7.24053 7.26765 7.83187 8.18280 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.006701 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.133557 B = 4177.676945 C = 5623.273230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.732 5.732 2 C 0.026 3.974 3 Si 0.978 3.022 4 H -0.250 1.250 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.423 4.423 8 H 0.110 0.890 9 C 0.192 3.808 10 N -0.485 5.485 11 C 0.084 3.916 12 C -0.112 4.112 13 N -0.418 5.418 14 C -0.058 4.058 15 C -0.006 4.006 16 C -0.080 4.080 17 C -0.106 4.106 18 C 0.034 3.966 19 C 0.584 3.416 20 N -0.815 5.815 21 O -0.575 6.575 22 N -0.449 5.449 23 C 0.102 3.898 24 H 0.289 0.711 25 H 0.163 0.837 26 H 0.167 0.833 27 H 0.146 0.854 28 H 0.156 0.844 29 H 0.420 0.580 30 H 0.415 0.585 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.111 -3.229 -2.294 8.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.352 5.352 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.173 1.173 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.452 4.452 8 H 0.127 0.873 9 C 0.068 3.932 10 N -0.202 5.202 11 C -0.087 4.087 12 C -0.275 4.275 13 N -0.130 5.130 14 C -0.203 4.203 15 C -0.010 4.010 16 C -0.107 4.107 17 C -0.126 4.126 18 C -0.104 4.104 19 C 0.368 3.632 20 N -0.378 5.378 21 O -0.454 6.454 22 N -0.160 5.160 23 C -0.059 4.059 24 H 0.100 0.900 25 H 0.180 0.820 26 H 0.184 0.816 27 H 0.164 0.836 28 H 0.174 0.826 29 H 0.252 0.748 30 H 0.248 0.752 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 7.665 -3.108 -2.400 8.612 hybrid contribution -0.725 0.796 0.319 1.123 sum 6.939 -2.312 -2.081 7.605 Atomic orbital electron populations 1.70095 1.09031 1.30302 1.25752 1.27087 0.95716 1.04704 0.92487 0.85185 0.79877 0.75903 0.79326 1.17266 1.18920 1.18443 1.20367 0.95978 0.89624 1.39212 0.87274 1.19592 0.89451 0.93356 0.90762 1.69529 1.07873 1.26668 1.16096 1.24149 1.01682 0.89905 0.92994 1.23174 0.90356 0.99193 1.14767 1.67732 1.09441 1.29322 1.06506 1.20123 0.92528 0.90262 1.17378 1.19566 0.91605 0.95043 0.94756 1.21868 0.92943 0.97716 0.98141 1.22057 0.94696 0.97926 0.97959 1.21126 0.94152 0.98207 0.96916 1.17777 0.86044 0.79285 0.80087 1.43440 1.12252 1.44541 1.37600 1.90783 1.63123 1.45121 1.46423 1.67400 1.06444 1.19477 1.22686 1.22879 0.89330 0.97073 0.96620 0.90002 0.81967 0.81637 0.83645 0.82621 0.74800 0.75173 0.81707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -35.61 11.49 21.87 0.25 -35.36 16 2 C 0.03 1.17 5.50 85.36 0.47 1.64 16 3 Si 0.98 34.44 29.56 68.60 2.03 36.47 16 4 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 5 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 6 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 7 C -0.42 -20.43 7.96 23.38 0.19 -20.25 16 8 H 0.11 4.91 4.78 -2.91 -0.01 4.90 16 9 C 0.19 9.77 6.54 40.35 0.26 10.03 16 10 N -0.48 -24.83 8.05 -187.80 -1.51 -26.34 16 11 C 0.08 3.67 11.22 84.98 0.95 4.62 16 12 C -0.11 -4.64 11.22 84.92 0.95 -3.68 16 13 N -0.42 -18.84 10.33 -182.32 -1.88 -20.72 16 14 C -0.06 -2.70 6.42 42.41 0.27 -2.43 16 15 C -0.01 -0.24 5.32 -19.89 -0.11 -0.35 16 16 C -0.08 -3.01 7.62 22.72 0.17 -2.83 16 17 C -0.11 -3.56 9.61 22.57 0.22 -3.34 16 18 C 0.03 1.12 6.75 41.91 0.28 1.40 16 19 C 0.58 17.27 8.08 86.86 0.70 17.97 16 20 N -0.81 -16.44 8.86 -175.44 -1.55 -18.00 16 21 O -0.58 -20.11 17.14 -3.80 -0.07 -20.18 16 22 N -0.45 -14.66 9.51 -183.78 -1.75 -16.40 16 23 C 0.10 3.71 10.86 85.20 0.93 4.63 16 24 H 0.29 12.54 8.29 -92.70 -0.77 11.77 16 25 H 0.16 5.83 8.06 -2.91 -0.02 5.81 16 26 H 0.17 5.53 8.06 -2.91 -0.02 5.51 16 27 H 0.15 5.48 6.82 -2.91 -0.02 5.46 16 28 H 0.16 4.76 7.63 -2.91 -0.02 4.74 16 29 H 0.42 7.37 8.15 -92.71 -0.76 6.62 16 30 H 0.42 6.24 8.93 -92.71 -0.83 5.41 16 31 H 0.17 5.68 8.06 -2.91 -0.02 5.65 16 Total: -1.00 -62.00 282.12 0.45 -61.55 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: -0.36 Total: 31.56 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 5.29 Total: 7.42 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -6.45 Total: -116.83 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.07 Total: -20.18 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Total: -62.00 0.45 -61.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239545353.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.841 kcal (2) G-P(sol) polarization free energy of solvation -62.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds