Wall clock time and date at job start Mon Mar 30 2020 01:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50701 * 119.99987 * 2 1 4 4 C 1.33150 * 120.00108 * 180.02562 * 2 1 3 5 5 C 1.47143 * 119.99834 * 6.17084 * 4 2 1 6 6 C 1.39552 * 120.63740 * 36.56080 * 5 4 2 7 7 C 1.37884 * 119.91910 * 179.69644 * 6 5 4 8 8 C 1.38811 * 121.30083 * 0.61174 * 7 6 5 9 9 C 1.50702 * 119.32913 * 179.69275 * 8 7 6 10 10 F 1.39901 * 109.47128 * 269.97135 * 9 8 7 11 11 F 1.39890 * 109.47208 * 29.97533 * 9 8 7 12 12 F 1.39904 * 109.47046 * 149.97704 * 9 8 7 13 13 C 1.36316 * 121.33856 * 359.66340 * 8 7 6 14 14 C 1.40865 * 119.95867 * 0.02925 * 13 8 7 15 15 C 1.40756 * 120.62382 * 179.97438 * 14 13 8 16 16 H 1.07997 * 120.00304 * 155.25032 * 15 14 13 17 17 C 1.40105 * 119.99743 * 335.24829 * 15 14 13 18 18 N 1.30760 * 120.00312 * 342.49251 * 17 15 14 19 19 Si 1.86807 * 119.99947 * 162.48628 * 17 15 14 20 20 H 1.48499 * 109.47107 * 94.98379 * 19 17 15 21 21 H 1.48496 * 109.47226 * 214.98403 * 19 17 15 22 22 H 1.48506 * 109.46968 * 334.98800 * 19 17 15 23 23 H 1.08997 * 109.47753 * 90.44864 * 1 2 3 24 24 H 1.09004 * 109.46998 * 330.45515 * 1 2 3 25 25 H 1.08998 * 109.47469 * 210.45655 * 1 2 3 26 26 H 1.08999 * 109.46958 * 90.00412 * 3 2 1 27 27 H 1.08998 * 109.46977 * 210.00459 * 3 2 1 28 28 H 1.09003 * 109.47117 * 330.00371 * 3 2 1 29 29 H 1.07996 * 120.00515 * 186.17385 * 4 2 1 30 30 H 1.08002 * 120.03985 * 359.97438 * 6 5 4 31 31 H 1.08005 * 119.34691 * 180.27306 * 7 6 5 32 32 H 1.08000 * 120.01822 * 180.02562 * 13 8 7 33 33 H 0.96999 * 120.00062 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1727 -1.1531 -0.0005 5 6 1.4434 -2.4236 -0.1381 6 6 0.3247 -2.5153 -0.9672 7 6 -0.3439 -3.7149 -1.0900 8 6 0.0649 -4.8431 -0.3922 9 6 -0.7028 -6.1298 -0.5542 10 9 -1.7215 -6.1887 0.4029 11 9 -1.2629 -6.1805 -1.8351 12 9 0.1634 -7.2146 -0.3807 13 6 1.1470 -4.8109 0.4362 14 6 1.8742 -3.6153 0.5974 15 6 2.9934 -3.5662 1.4495 16 1 3.7645 -2.8279 1.2862 17 6 3.1070 -4.4750 2.5097 18 7 2.0543 -5.1298 2.9254 19 14 4.7627 -4.7516 3.3295 20 1 4.8726 -3.8828 4.5288 21 1 4.8819 -6.1747 3.7366 22 1 5.8498 -4.4170 2.3746 23 1 -0.3634 -0.0080 -1.0276 24 1 -0.3633 0.8941 0.5068 25 1 -0.3634 -0.8858 0.5209 26 1 2.4422 1.6197 1.0277 27 1 3.2128 1.1748 -0.5139 28 1 1.6713 2.0648 -0.5138 29 1 3.2480 -1.1559 0.1001 30 1 -0.0143 -1.6488 -1.5156 31 1 -1.2060 -3.7765 -1.7377 32 1 1.4466 -5.7016 0.9685 33 1 2.1329 -5.7587 3.6596 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240635976.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:11 Heat of formation + Delta-G solvation = -136.250713 kcal Electronic energy + Delta-G solvation = -20573.903215 eV Core-core repulsion = 16955.880206 eV Total energy + Delta-G solvation = -3618.023010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.093 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.38037 -46.91034 -46.83738 -38.03867 -35.31725 -34.01796 -30.83138 -29.91934 -27.15518 -26.91099 -25.63191 -23.74287 -21.25792 -20.36453 -18.14233 -17.71363 -17.53173 -17.33728 -16.40176 -15.25012 -14.72550 -14.27105 -13.79945 -13.71659 -13.69181 -13.35490 -13.33136 -13.11668 -13.04649 -12.99560 -12.58559 -12.49120 -11.90485 -11.78532 -11.41555 -11.32949 -11.22541 -11.08016 -10.88602 -10.64022 -10.56368 -9.85547 -9.65201 -9.44244 -8.58384 -7.69804 -7.21887 -7.03994 -4.56526 1.96956 2.64172 2.94314 2.97820 3.04674 3.30790 3.55540 3.72783 4.30098 4.73688 4.95540 5.09591 5.46326 5.58261 5.61758 5.92113 5.96619 6.02510 6.16768 6.27661 6.32378 6.35418 6.57849 6.65306 6.79009 6.87990 6.95480 7.18393 7.27027 7.53191 7.61591 7.76105 7.80452 7.95676 8.24926 8.53601 8.62954 9.86042 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.009307 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.719713 B = 3007.858615 C = 5036.052787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.192 4.192 3 C -0.101 4.101 4 C -0.055 4.055 5 C -0.174 4.174 6 C -0.067 4.067 7 C -0.223 4.223 8 C -0.147 4.147 9 C 0.502 3.498 10 F -0.187 7.187 11 F -0.191 7.191 12 F -0.186 7.186 13 C -0.126 4.126 14 C 0.123 3.877 15 C -0.432 4.432 16 H 0.088 0.912 17 C 0.072 3.928 18 N -0.773 5.773 19 Si 0.913 3.087 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.257 1.257 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 2.803 -2.626 3.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.192 4.192 3 C -0.158 4.158 4 C -0.073 4.073 5 C -0.176 4.176 6 C -0.085 4.085 7 C -0.242 4.242 8 C -0.148 4.148 9 C 0.448 3.552 10 F -0.169 7.169 11 F -0.172 7.172 12 F -0.168 7.168 13 C -0.145 4.145 14 C 0.120 3.880 15 C -0.459 4.459 16 H 0.106 0.894 17 C -0.149 4.149 18 N -0.396 5.396 19 Si 0.737 3.263 20 H -0.192 1.192 21 H -0.197 1.197 22 H -0.180 1.180 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.148 0.852 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.644 2.584 -2.430 3.605 hybrid contribution 0.457 -0.519 0.489 0.847 sum -0.187 2.064 -1.941 2.840 Atomic orbital electron populations 1.20876 0.92993 1.01630 1.00564 1.21765 0.95326 0.94091 1.08038 1.20611 0.99035 0.95229 1.00880 1.21225 0.97975 0.91010 0.97078 1.19914 0.98684 0.92587 1.06423 1.20812 0.94429 0.95770 0.97499 1.19814 1.04244 0.93168 1.06996 1.19299 0.99710 0.91157 1.04665 1.18868 0.77513 0.85991 0.72804 1.93152 1.62032 1.96915 1.64763 1.93095 1.86488 1.96932 1.40719 1.93124 1.69929 1.58568 1.95144 1.20844 0.95645 0.99459 0.98537 1.18561 0.90888 0.88707 0.89871 1.19586 1.04501 1.13382 1.08455 0.89385 1.26101 0.98447 0.93730 0.96620 1.69756 1.30052 1.18720 1.21094 0.86193 0.81645 0.78740 0.79768 1.19188 1.19660 1.18023 0.92778 0.93810 0.91011 0.92697 0.92735 0.92930 0.87945 0.87399 0.88391 0.85191 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 8.23 36.00 0.30 -1.44 16 2 C -0.19 -3.38 6.03 -101.12 -0.61 -3.99 16 3 C -0.10 -1.44 10.03 36.01 0.36 -1.07 16 4 C -0.05 -1.11 8.71 -37.74 -0.33 -1.43 16 5 C -0.17 -3.96 5.34 -102.46 -0.55 -4.50 16 6 C -0.07 -1.43 7.70 -39.22 -0.30 -1.73 16 7 C -0.22 -4.85 9.33 -39.50 -0.37 -5.22 16 8 C -0.15 -3.39 5.42 -105.10 -0.57 -3.96 16 9 C 0.50 10.64 3.34 36.01 0.12 10.76 16 10 F -0.19 -3.96 17.30 2.25 0.04 -3.92 16 11 F -0.19 -3.77 16.39 2.25 0.04 -3.73 16 12 F -0.19 -3.94 16.38 2.25 0.04 -3.91 16 13 C -0.13 -3.13 7.97 -39.28 -0.31 -3.44 16 14 C 0.12 3.06 5.73 -104.62 -0.60 2.46 16 15 C -0.43 -10.51 8.59 -37.93 -0.33 -10.83 16 16 H 0.09 2.04 6.88 -52.49 -0.36 1.67 16 17 C 0.07 1.68 5.15 -17.31 -0.09 1.59 16 18 N -0.77 -18.76 10.97 55.56 0.61 -18.15 16 19 Si 0.91 17.35 29.60 -169.99 -5.03 12.32 16 20 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 21 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 23 H 0.05 0.83 6.72 -51.93 -0.35 0.48 16 24 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 25 H 0.07 1.36 6.30 -51.93 -0.33 1.04 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 28 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.10 2.00 7.27 -52.49 -0.38 1.62 16 30 H 0.11 2.03 5.50 -52.49 -0.29 1.74 16 31 H 0.10 1.95 7.53 -52.48 -0.39 1.55 16 32 H 0.13 3.35 5.65 -52.49 -0.30 3.05 16 33 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 LS Contribution 290.13 15.07 4.37 4.37 Total: -1.00 -24.87 290.13 -6.43 -31.30 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.22 Total: 4.54 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -3.28 Total: -22.82 kcal Atomic # 7 Polarization: -18.76 SS G_CDS: 0.61 Total: -18.15 kcal Atomic # 9 Polarization: -11.67 SS G_CDS: 0.11 Total: -11.56 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -24.87 -6.43 -31.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240635976.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.949 kcal (2) G-P(sol) polarization free energy of solvation -24.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds