Wall clock time and date at job start Mon Mar 30 2020 01:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50701 * 119.99987 * 2 1 4 4 C 1.33150 * 120.00108 * 180.02562 * 2 1 3 5 5 C 1.47143 * 119.99834 * 6.17084 * 4 2 1 6 6 C 1.39552 * 120.63740 * 36.56080 * 5 4 2 7 7 C 1.37884 * 119.91910 * 179.69644 * 6 5 4 8 8 C 1.38811 * 121.30083 * 0.61174 * 7 6 5 9 9 C 1.50702 * 119.32913 * 179.69275 * 8 7 6 10 10 F 1.39901 * 109.47128 * 269.97135 * 9 8 7 11 11 F 1.39890 * 109.47208 * 29.97533 * 9 8 7 12 12 F 1.39904 * 109.47046 * 149.97704 * 9 8 7 13 13 C 1.36316 * 121.33856 * 359.66340 * 8 7 6 14 14 C 1.40865 * 119.95867 * 0.02925 * 13 8 7 15 15 C 1.40756 * 120.62382 * 179.97438 * 14 13 8 16 16 H 1.07997 * 120.00304 * 155.25032 * 15 14 13 17 17 C 1.40105 * 119.99743 * 335.24829 * 15 14 13 18 18 N 1.30760 * 120.00312 * 342.49251 * 17 15 14 19 19 Si 1.86807 * 119.99947 * 162.48628 * 17 15 14 20 20 H 1.48499 * 109.47107 * 94.98379 * 19 17 15 21 21 H 1.48496 * 109.47226 * 214.98403 * 19 17 15 22 22 H 1.48506 * 109.46968 * 334.98800 * 19 17 15 23 23 H 1.08997 * 109.47753 * 90.44864 * 1 2 3 24 24 H 1.09004 * 109.46998 * 330.45515 * 1 2 3 25 25 H 1.08998 * 109.47469 * 210.45655 * 1 2 3 26 26 H 1.08999 * 109.46958 * 90.00412 * 3 2 1 27 27 H 1.08998 * 109.46977 * 210.00459 * 3 2 1 28 28 H 1.09003 * 109.47117 * 330.00371 * 3 2 1 29 29 H 1.07996 * 120.00515 * 186.17385 * 4 2 1 30 30 H 1.08002 * 120.03985 * 359.97438 * 6 5 4 31 31 H 1.08005 * 119.34691 * 180.27306 * 7 6 5 32 32 H 1.08000 * 120.01822 * 180.02562 * 13 8 7 33 33 H 0.96999 * 120.00062 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1727 -1.1531 -0.0005 5 6 1.4434 -2.4236 -0.1381 6 6 0.3247 -2.5153 -0.9672 7 6 -0.3439 -3.7149 -1.0900 8 6 0.0649 -4.8431 -0.3922 9 6 -0.7028 -6.1298 -0.5542 10 9 -1.7215 -6.1887 0.4029 11 9 -1.2629 -6.1805 -1.8351 12 9 0.1634 -7.2146 -0.3807 13 6 1.1470 -4.8109 0.4362 14 6 1.8742 -3.6153 0.5974 15 6 2.9934 -3.5662 1.4495 16 1 3.7645 -2.8279 1.2862 17 6 3.1070 -4.4750 2.5097 18 7 2.0543 -5.1298 2.9254 19 14 4.7627 -4.7516 3.3295 20 1 4.8726 -3.8828 4.5288 21 1 4.8819 -6.1747 3.7366 22 1 5.8498 -4.4170 2.3746 23 1 -0.3634 -0.0080 -1.0276 24 1 -0.3633 0.8941 0.5068 25 1 -0.3634 -0.8858 0.5209 26 1 2.4422 1.6197 1.0277 27 1 3.2128 1.1748 -0.5139 28 1 1.6713 2.0648 -0.5138 29 1 3.2480 -1.1559 0.1001 30 1 -0.0143 -1.6488 -1.5156 31 1 -1.2060 -3.7765 -1.7377 32 1 1.4466 -5.7016 0.9685 33 1 2.1329 -5.7587 3.6596 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240635976.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:11 Heat of formation + Delta-G solvation = -145.888577 kcal Electronic energy + Delta-G solvation = -20574.321144 eV Core-core repulsion = 16955.880206 eV Total energy + Delta-G solvation = -3618.440939 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.093 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.07777 -48.58783 -48.54450 -39.73756 -36.82669 -35.74664 -32.47890 -31.64104 -28.47675 -28.44198 -27.40665 -25.36263 -23.00986 -22.03895 -19.86334 -19.41640 -19.22280 -18.84144 -18.16646 -16.88813 -16.34424 -15.87199 -15.46136 -15.33870 -15.25120 -15.02241 -14.88927 -14.79567 -14.73857 -14.59127 -14.04702 -13.94107 -13.53187 -13.19834 -13.00418 -12.87917 -12.78468 -12.65289 -12.32939 -12.17699 -12.05539 -11.54135 -11.29561 -11.15011 -10.20043 -9.47858 -8.86397 -8.72392 -6.36907 0.28023 0.94298 1.37168 1.46852 1.52891 1.71031 1.83457 2.14727 2.58254 3.00145 3.25948 3.35649 3.72666 4.21618 4.28696 4.35485 4.49492 4.66899 4.80270 4.93688 4.97587 5.03091 5.05094 5.15742 5.17218 5.23725 5.28891 5.44648 5.68901 5.84341 5.93077 6.06570 6.12574 6.31310 6.47756 6.77267 6.85645 8.17719 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.009307 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.719713 B = 3007.858615 C = 5036.052787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.160 4.160 3 C -0.103 4.103 4 C -0.100 4.100 5 C -0.170 4.170 6 C -0.073 4.073 7 C -0.220 4.220 8 C -0.161 4.161 9 C 0.509 3.491 10 F -0.187 7.187 11 F -0.179 7.179 12 F -0.188 7.188 13 C -0.154 4.154 14 C 0.089 3.911 15 C -0.462 4.462 16 H 0.089 0.911 17 C 0.034 3.966 18 N -0.811 5.811 19 Si 0.982 3.018 20 H -0.260 1.260 21 H -0.267 1.267 22 H -0.254 1.254 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.136 0.864 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.562 4.832 -3.213 5.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.118 4.118 5 C -0.171 4.171 6 C -0.090 4.090 7 C -0.240 4.240 8 C -0.162 4.162 9 C 0.455 3.545 10 F -0.169 7.169 11 F -0.161 7.161 12 F -0.170 7.170 13 C -0.173 4.173 14 C 0.087 3.913 15 C -0.490 4.490 16 H 0.107 0.893 17 C -0.183 4.183 18 N -0.435 5.435 19 Si 0.802 3.198 20 H -0.185 1.185 21 H -0.192 1.192 22 H -0.177 1.177 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.154 0.846 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.682 4.621 -3.031 5.568 hybrid contribution 0.340 -0.958 0.575 1.168 sum -0.342 3.663 -2.456 4.423 Atomic orbital electron populations 1.20939 0.92231 1.01642 1.01751 1.22274 0.96140 0.94774 1.02799 1.20710 0.99438 0.93703 1.02081 1.21203 0.98102 0.90936 1.01519 1.20329 0.98750 0.93031 1.05031 1.21122 0.94064 0.96578 0.97273 1.20170 1.04549 0.92874 1.06367 1.19503 0.99581 0.92475 1.04656 1.18612 0.77332 0.85382 0.73188 1.93147 1.61934 1.96885 1.64915 1.93111 1.86247 1.96859 1.39848 1.93118 1.70106 1.58529 1.95200 1.20732 0.97304 0.99123 1.00181 1.18964 0.91761 0.89664 0.90954 1.19781 1.05017 1.14675 1.09494 0.89267 1.26911 1.01649 0.92986 0.96776 1.69816 1.31979 1.19690 1.21999 0.85179 0.77171 0.78724 0.78745 1.18458 1.19194 1.17691 0.90791 0.91215 0.93666 0.91596 0.91903 0.90383 0.88100 0.84600 0.86191 0.87106 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.30 8.23 71.23 0.59 -2.71 16 2 C -0.16 -5.20 6.03 -17.59 -0.11 -5.30 16 3 C -0.10 -2.53 10.03 71.24 0.71 -1.81 16 4 C -0.10 -3.94 8.71 23.46 0.20 -3.73 16 5 C -0.17 -7.74 5.34 -18.47 -0.10 -7.84 16 6 C -0.07 -3.01 7.70 22.50 0.17 -2.84 16 7 C -0.22 -9.42 9.33 22.32 0.21 -9.21 16 8 C -0.16 -7.52 5.42 -20.17 -0.11 -7.63 16 9 C 0.51 21.62 3.34 71.24 0.24 21.86 16 10 F -0.19 -7.94 17.30 44.97 0.78 -7.16 16 11 F -0.18 -6.89 16.39 44.97 0.74 -6.15 16 12 F -0.19 -8.12 16.38 44.97 0.74 -7.38 16 13 C -0.15 -7.97 7.97 22.46 0.18 -7.79 16 14 C 0.09 4.61 5.73 -19.86 -0.11 4.49 16 15 C -0.46 -23.32 8.59 23.34 0.20 -23.12 16 16 H 0.09 4.28 6.88 -2.91 -0.02 4.26 16 17 C 0.03 1.64 5.15 85.31 0.44 2.08 16 18 N -0.81 -40.95 10.97 21.86 0.24 -40.71 16 19 Si 0.98 36.19 29.60 68.60 2.03 38.22 16 20 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 21 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 22 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 23 H 0.07 1.98 6.72 -2.39 -0.02 1.96 16 24 H 0.07 1.76 8.12 -2.39 -0.02 1.74 16 25 H 0.04 1.63 6.30 -2.39 -0.02 1.61 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 1.47 8.07 -2.39 -0.02 1.45 16 28 H 0.08 1.57 8.12 -2.39 -0.02 1.55 16 29 H 0.10 3.95 7.27 -2.91 -0.02 3.93 16 30 H 0.14 4.74 5.50 -2.91 -0.02 4.72 16 31 H 0.12 4.52 7.53 -2.91 -0.02 4.50 16 32 H 0.11 6.05 5.65 -2.91 -0.02 6.04 16 33 H 0.29 13.42 8.29 -92.71 -0.77 12.65 16 Total: -1.00 -54.69 290.13 8.19 -46.50 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 1.15 Total: 20.22 kcal Atomic # 6 Polarization: -46.05 SS G_CDS: 2.52 Total: -43.54 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.24 Total: -40.71 kcal Atomic # 9 Polarization: -22.95 SS G_CDS: 2.25 Total: -20.70 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Total: -54.69 8.19 -46.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240635976.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.389 kcal (2) G-P(sol) polarization free energy of solvation -54.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds