Wall clock time and date at job start Mon Mar 30 2020 01:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76195 * 103.00004 * 2 1 4 4 C 1.39133 * 120.01038 * 0.02562 * 3 2 1 5 5 C 1.38216 * 120.21421 * 180.02562 * 4 3 2 6 6 C 1.38029 * 120.22575 * 0.02601 * 5 4 3 7 7 C 1.39640 * 120.01067 * 0.23101 * 6 5 4 8 8 C 1.48000 * 120.10048 * 179.72340 * 7 6 5 9 9 C 1.39932 * 119.88020 * 179.72731 * 8 7 6 10 10 C 1.36258 * 120.12283 * 179.72172 * 9 8 7 11 11 C 1.40927 * 119.87475 * 0.54662 * 10 9 8 12 12 C 1.41035 * 120.12081 * 179.70105 * 11 10 9 13 13 H 1.07996 * 119.99725 * 155.05168 * 12 11 10 14 14 C 1.40007 * 119.99592 * 335.05254 * 12 11 10 15 15 N 1.30795 * 120.00389 * 342.14259 * 14 12 11 16 16 Si 1.86800 * 119.99977 * 162.13966 * 14 12 11 17 17 H 1.48499 * 109.47242 * 94.65362 * 16 14 12 18 18 H 1.48497 * 109.47267 * 214.65622 * 16 14 12 19 19 H 1.48510 * 109.47057 * 334.65614 * 16 14 12 20 20 C 1.40941 * 119.76564 * 359.72685 * 11 10 9 21 21 C 1.36250 * 119.87133 * 359.97438 * 20 11 10 22 22 C 1.38666 * 120.00808 * 180.02562 * 3 2 1 23 23 H 1.09004 * 109.46839 * 299.99535 * 1 2 3 24 24 H 1.09005 * 109.47365 * 59.99550 * 1 2 3 25 25 H 1.08999 * 109.47608 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.89472 * 0.04553 * 4 3 2 27 27 H 1.07995 * 119.88886 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.99382 * 179.97438 * 6 5 4 29 29 H 1.08003 * 119.94155 * 359.97438 * 9 8 7 30 30 H 1.08004 * 120.06418 * 180.27527 * 10 9 8 31 31 H 0.97001 * 120.00336 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.06099 * 179.97438 * 20 11 10 33 33 H 1.08002 * 119.93545 * 180.02562 * 21 20 11 34 34 H 1.08003 * 120.11714 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1930 2.6659 0.0005 5 6 1.4991 4.0137 0.0000 6 6 2.8160 4.4271 -0.0016 7 6 3.8446 3.4827 -0.0076 8 6 5.2573 3.9238 -0.0155 9 6 6.2843 2.9734 -0.0157 10 6 7.5866 3.3740 -0.0287 11 6 7.8984 4.7483 -0.0303 12 6 9.2446 5.1687 -0.0374 13 1 9.5051 6.1392 -0.4332 14 6 10.2431 4.3279 0.4688 15 7 9.9231 3.3302 1.2517 16 14 12.0324 4.6310 0.0261 17 1 12.6721 5.4523 1.0850 18 1 12.7411 3.3311 -0.0881 19 1 12.1063 5.3507 -1.2709 20 6 6.8600 5.7013 -0.0243 21 6 5.5612 5.2897 -0.0175 22 6 3.5364 2.1224 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.1607 2.3484 0.0017 27 1 0.7052 4.7459 0.0000 28 1 3.0510 5.4813 -0.0024 29 1 6.0444 1.9204 -0.0096 30 1 8.3786 2.6396 -0.0333 31 1 10.6149 2.7474 1.6021 32 1 7.0934 6.7558 -0.0250 33 1 4.7647 6.0191 -0.0132 34 1 4.3279 1.3875 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241314219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:36 Heat of formation + Delta-G solvation = 31.718864 kcal Electronic energy + Delta-G solvation = -16806.773784 eV Core-core repulsion = 14180.644093 eV Total energy + Delta-G solvation = -2626.129691 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.077 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.89241 -37.23695 -34.03822 -31.70158 -30.83991 -29.46083 -29.40660 -28.32100 -25.22140 -22.78908 -22.25671 -20.45223 -20.01207 -17.58345 -17.25279 -16.03205 -15.43164 -14.88976 -14.54926 -14.37920 -13.85183 -13.70334 -13.34522 -13.04878 -12.82260 -12.65851 -12.57090 -12.10120 -11.89395 -11.44053 -11.24101 -11.12542 -11.04073 -10.70810 -10.48750 -10.09121 -9.80617 -9.55206 -9.41252 -9.26219 -8.67860 -7.66686 -7.29124 -7.08997 -6.93465 -4.47892 1.47181 1.65586 1.72505 2.53906 2.72702 2.97287 3.01659 3.04798 3.13283 3.78070 4.15637 4.62975 4.97103 4.97598 5.18965 5.25865 5.52822 5.60209 5.62141 5.75826 5.89229 6.06483 6.15535 6.33219 6.47040 6.66281 6.73541 6.84081 6.87420 6.94074 7.13561 7.29109 7.36145 7.48318 7.80248 7.89826 8.03518 8.11428 8.45575 8.67967 8.80480 9.94884 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.034435 B = 0.003847 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.941381 B = 7277.524648 C = 8007.240807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.136 6.136 3 C -0.071 4.071 4 C -0.176 4.176 5 C -0.093 4.093 6 C -0.150 4.150 7 C 0.043 3.957 8 C -0.210 4.210 9 C -0.072 4.072 10 C -0.173 4.173 11 C 0.120 3.880 12 C -0.445 4.445 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.775 5.775 16 Si 0.912 3.088 17 H -0.268 1.268 18 H -0.273 1.273 19 H -0.258 1.258 20 C -0.231 4.231 21 C -0.059 4.059 22 C -0.124 4.124 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.285 0.715 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.314 -3.105 -1.568 11.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.105 5.895 3 C -0.183 4.183 4 C -0.200 4.200 5 C -0.112 4.112 6 C -0.170 4.170 7 C 0.041 3.959 8 C -0.212 4.212 9 C -0.090 4.090 10 C -0.192 4.192 11 C 0.117 3.883 12 C -0.473 4.473 13 H 0.101 0.899 14 C -0.147 4.147 15 N -0.399 5.399 16 Si 0.735 3.265 17 H -0.193 1.193 18 H -0.198 1.198 19 H -0.182 1.182 20 C -0.251 4.251 21 C -0.078 4.078 22 C -0.147 4.147 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.121 0.879 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.139 0.861 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.560 -4.364 -1.414 11.513 hybrid contribution -0.061 1.182 -0.016 1.183 sum -10.621 -3.182 -1.430 11.179 Atomic orbital electron populations 1.23588 0.95465 1.06443 1.05416 1.85407 1.05698 1.05001 1.93374 1.21445 0.96691 0.95151 1.05024 1.20864 0.97205 0.93256 1.08663 1.20815 0.96293 0.94820 0.99303 1.21237 0.92022 0.99522 1.04189 1.18921 0.93392 0.91529 0.92027 1.18030 0.89630 0.93336 1.20181 1.20539 0.93139 0.96754 0.98616 1.20993 0.94754 0.96371 1.07051 1.17750 0.92714 0.91607 0.86183 1.19740 0.91359 1.02438 1.33726 0.89909 1.26050 1.02302 0.93799 0.92555 1.69814 1.36580 1.12967 1.20517 0.86236 0.80844 0.79069 0.80342 1.19319 1.19767 1.18165 1.20691 0.92503 0.97904 1.13965 1.20392 0.95696 0.93830 0.97848 1.20798 0.93670 0.95896 1.04366 0.90015 0.90015 0.87906 0.86981 0.86635 0.86059 0.88961 0.86356 0.90350 0.88659 0.88866 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.15 101.05 0.92 -0.42 16 2 S -0.14 -1.90 22.56 -107.50 -2.43 -4.32 16 3 C -0.07 -1.18 6.11 -39.09 -0.24 -1.41 16 4 C -0.18 -2.64 9.36 -39.26 -0.37 -3.01 16 5 C -0.09 -1.40 10.02 -39.67 -0.40 -1.79 16 6 C -0.15 -2.61 9.43 -39.13 -0.37 -2.97 16 7 C 0.04 0.86 5.88 -104.91 -0.62 0.24 16 8 C -0.21 -4.71 5.90 -104.63 -0.62 -5.33 16 9 C -0.07 -1.69 9.36 -39.66 -0.37 -2.06 16 10 C -0.17 -4.38 8.63 -39.28 -0.34 -4.71 16 11 C 0.12 3.10 5.57 -106.80 -0.59 2.51 16 12 C -0.44 -11.25 9.03 -37.86 -0.34 -11.60 16 13 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 14 C 0.07 1.75 5.13 -17.33 -0.09 1.66 16 15 N -0.78 -19.15 10.97 55.55 0.61 -18.54 16 16 Si 0.91 17.65 29.60 -169.99 -5.03 12.62 16 17 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 20 C -0.23 -5.50 9.73 -39.27 -0.38 -5.89 16 21 C -0.06 -1.32 9.36 -39.66 -0.37 -1.69 16 22 C -0.12 -2.33 9.17 -38.96 -0.36 -2.69 16 23 H 0.08 0.73 7.74 -51.92 -0.40 0.33 16 24 H 0.08 0.73 7.75 -51.92 -0.40 0.32 16 25 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.11 1.37 5.86 -52.49 -0.31 1.06 16 27 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 28 H 0.12 1.95 6.17 -52.49 -0.32 1.63 16 29 H 0.09 1.98 6.17 -52.48 -0.32 1.65 16 30 H 0.12 3.07 6.18 -52.48 -0.32 2.74 16 31 H 0.29 6.36 8.30 -40.82 -0.34 6.02 16 32 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 33 H 0.09 1.79 6.17 -52.49 -0.32 1.47 16 34 H 0.12 2.34 6.18 -52.48 -0.32 2.02 16 LS Contribution 298.95 15.07 4.51 4.51 Total: -1.00 -26.70 298.95 -10.42 -37.12 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -3.55 Total: 7.77 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: -4.53 Total: -39.15 kcal Atomic # 7 Polarization: -19.15 SS G_CDS: 0.61 Total: -18.54 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 16 Polarization: -1.90 SS G_CDS: -2.43 Total: -4.32 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.70 -10.42 -37.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241314219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.840 kcal (2) G-P(sol) polarization free energy of solvation -26.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds