Wall clock time and date at job start Mon Mar 30 2020 01:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76195 * 103.00004 * 2 1 4 4 C 1.39133 * 120.01038 * 0.02562 * 3 2 1 5 5 C 1.38216 * 120.21421 * 180.02562 * 4 3 2 6 6 C 1.38029 * 120.22575 * 0.02601 * 5 4 3 7 7 C 1.39640 * 120.01067 * 0.23101 * 6 5 4 8 8 C 1.48000 * 120.10048 * 179.72340 * 7 6 5 9 9 C 1.39932 * 119.88020 * 179.72731 * 8 7 6 10 10 C 1.36258 * 120.12283 * 179.72172 * 9 8 7 11 11 C 1.40927 * 119.87475 * 0.54662 * 10 9 8 12 12 C 1.41035 * 120.12081 * 179.70105 * 11 10 9 13 13 H 1.07996 * 119.99725 * 155.05168 * 12 11 10 14 14 C 1.40007 * 119.99592 * 335.05254 * 12 11 10 15 15 N 1.30795 * 120.00389 * 342.14259 * 14 12 11 16 16 Si 1.86800 * 119.99977 * 162.13966 * 14 12 11 17 17 H 1.48499 * 109.47242 * 94.65362 * 16 14 12 18 18 H 1.48497 * 109.47267 * 214.65622 * 16 14 12 19 19 H 1.48510 * 109.47057 * 334.65614 * 16 14 12 20 20 C 1.40941 * 119.76564 * 359.72685 * 11 10 9 21 21 C 1.36250 * 119.87133 * 359.97438 * 20 11 10 22 22 C 1.38666 * 120.00808 * 180.02562 * 3 2 1 23 23 H 1.09004 * 109.46839 * 299.99535 * 1 2 3 24 24 H 1.09005 * 109.47365 * 59.99550 * 1 2 3 25 25 H 1.08999 * 109.47608 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.89472 * 0.04553 * 4 3 2 27 27 H 1.07995 * 119.88886 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.99382 * 179.97438 * 6 5 4 29 29 H 1.08003 * 119.94155 * 359.97438 * 9 8 7 30 30 H 1.08004 * 120.06418 * 180.27527 * 10 9 8 31 31 H 0.97001 * 120.00336 * 179.97438 * 15 14 12 32 32 H 1.08000 * 120.06099 * 179.97438 * 20 11 10 33 33 H 1.08002 * 119.93545 * 180.02562 * 21 20 11 34 34 H 1.08003 * 120.11714 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1930 2.6659 0.0005 5 6 1.4991 4.0137 0.0000 6 6 2.8160 4.4271 -0.0016 7 6 3.8446 3.4827 -0.0076 8 6 5.2573 3.9238 -0.0155 9 6 6.2843 2.9734 -0.0157 10 6 7.5866 3.3740 -0.0287 11 6 7.8984 4.7483 -0.0303 12 6 9.2446 5.1687 -0.0374 13 1 9.5051 6.1392 -0.4332 14 6 10.2431 4.3279 0.4688 15 7 9.9231 3.3302 1.2517 16 14 12.0324 4.6310 0.0261 17 1 12.6721 5.4523 1.0850 18 1 12.7411 3.3311 -0.0881 19 1 12.1063 5.3507 -1.2709 20 6 6.8600 5.7013 -0.0243 21 6 5.5612 5.2897 -0.0175 22 6 3.5364 2.1224 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.1607 2.3484 0.0017 27 1 0.7052 4.7459 0.0000 28 1 3.0510 5.4813 -0.0024 29 1 6.0444 1.9204 -0.0096 30 1 8.3786 2.6396 -0.0333 31 1 10.6149 2.7474 1.6021 32 1 7.0934 6.7558 -0.0250 33 1 4.7647 6.0191 -0.0132 34 1 4.3279 1.3875 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241314219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:35 Heat of formation + Delta-G solvation = 20.766278 kcal Electronic energy + Delta-G solvation = -16807.248724 eV Core-core repulsion = 14180.644093 eV Total energy + Delta-G solvation = -2626.604631 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.077 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38235 -38.88750 -35.78080 -33.25586 -32.25738 -31.15290 -30.69813 -29.52533 -26.92378 -24.24484 -23.80222 -22.12741 -21.62869 -19.37932 -18.61560 -17.32731 -17.10585 -16.33518 -15.99403 -15.81016 -14.98687 -14.87020 -14.70876 -14.61930 -14.41587 -14.00015 -13.91554 -13.56969 -13.37048 -13.06466 -12.81157 -12.67229 -12.48736 -12.25905 -11.97050 -11.54725 -11.31561 -11.18193 -11.01791 -10.68510 -10.17301 -9.51913 -8.90425 -8.70319 -8.34580 -6.35725 0.03828 0.39221 0.61121 1.11246 1.17630 1.37535 1.51018 1.54270 1.56891 2.16740 2.58172 3.01125 3.75358 3.95411 3.98157 4.18931 4.29596 4.31577 4.36011 4.40169 4.55060 4.57977 4.86065 4.88102 4.94699 5.07181 5.12972 5.22858 5.30846 5.35016 5.51433 5.60757 5.69682 5.89826 6.04031 6.11848 6.25452 6.27686 6.60272 6.82896 6.95440 8.22135 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.034435 B = 0.003847 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.941381 B = 7277.524648 C = 8007.240807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.169 6.169 3 C -0.080 4.080 4 C -0.161 4.161 5 C -0.087 4.087 6 C -0.152 4.152 7 C 0.009 3.991 8 C -0.205 4.205 9 C -0.085 4.085 10 C -0.194 4.194 11 C 0.088 3.912 12 C -0.485 4.485 13 H 0.084 0.916 14 C 0.034 3.966 15 N -0.814 5.814 16 Si 0.986 3.014 17 H -0.260 1.260 18 H -0.265 1.265 19 H -0.256 1.256 20 C -0.245 4.245 21 C -0.065 4.065 22 C -0.140 4.140 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.126 0.874 26 H 0.149 0.851 27 H 0.157 0.843 28 H 0.133 0.867 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.292 0.708 32 H 0.106 0.894 33 H 0.126 0.874 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.520 -2.913 -1.783 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.072 5.928 3 C -0.192 4.192 4 C -0.184 4.184 5 C -0.106 4.106 6 C -0.172 4.172 7 C 0.007 3.993 8 C -0.206 4.206 9 C -0.103 4.103 10 C -0.214 4.214 11 C 0.086 3.914 12 C -0.513 4.513 13 H 0.102 0.898 14 C -0.183 4.183 15 N -0.438 5.438 16 Si 0.806 3.194 17 H -0.184 1.184 18 H -0.190 1.190 19 H -0.180 1.180 20 C -0.264 4.264 21 C -0.082 4.082 22 C -0.164 4.164 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.145 0.855 26 H 0.167 0.833 27 H 0.175 0.825 28 H 0.151 0.849 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.787 -4.178 -1.628 14.498 hybrid contribution 0.484 0.984 0.053 1.098 sum -13.303 -3.194 -1.575 13.772 Atomic orbital electron populations 1.23747 0.90850 1.08491 1.06639 1.85592 1.10725 1.03406 1.93051 1.21666 0.96137 0.97063 1.04360 1.21389 0.98530 0.92958 1.05554 1.21271 0.96182 0.95841 0.97329 1.21463 0.92584 0.99635 1.03470 1.18908 0.92516 0.92709 0.95134 1.18405 0.91129 0.93339 1.17722 1.20732 0.92992 0.97758 0.98837 1.20950 0.95147 0.96318 1.08956 1.18084 0.93837 0.92125 0.87392 1.19964 0.92095 1.03368 1.35872 0.89824 1.26909 1.06511 0.93174 0.91721 1.69868 1.38222 1.14104 1.21615 0.85128 0.75082 0.79145 0.80020 1.18430 1.18981 1.17976 1.20923 0.93029 0.98216 1.14244 1.20709 0.95917 0.94483 0.97130 1.20805 0.94831 0.95406 1.05330 0.88732 0.88667 0.85548 0.83326 0.82527 0.84905 0.88109 0.88041 0.89705 0.87608 0.85617 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.15 113.37 1.04 -0.84 16 2 S -0.17 -4.37 22.56 -56.49 -1.27 -5.64 16 3 C -0.08 -2.48 6.11 22.59 0.14 -2.34 16 4 C -0.16 -4.10 9.36 22.48 0.21 -3.89 16 5 C -0.09 -2.22 10.02 22.21 0.22 -2.00 16 6 C -0.15 -4.87 9.43 22.56 0.21 -4.65 16 7 C 0.01 0.36 5.88 -20.05 -0.12 0.24 16 8 C -0.20 -9.36 5.90 -19.87 -0.12 -9.47 16 9 C -0.08 -4.20 9.36 22.22 0.21 -3.99 16 10 C -0.19 -10.53 8.63 22.47 0.19 -10.33 16 11 C 0.09 4.81 5.57 -21.27 -0.12 4.69 16 12 C -0.48 -25.85 9.03 23.39 0.21 -25.64 16 13 H 0.08 4.24 7.91 -2.91 -0.02 4.21 16 14 C 0.03 1.67 5.13 85.28 0.44 2.11 16 15 N -0.81 -42.32 10.97 21.84 0.24 -42.08 16 16 Si 0.99 37.27 29.60 68.60 2.03 39.30 16 17 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 18 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 19 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 20 C -0.24 -12.04 9.73 22.47 0.22 -11.82 16 21 C -0.06 -2.87 9.36 22.22 0.21 -2.66 16 22 C -0.14 -5.26 9.17 22.67 0.21 -5.05 16 23 H 0.09 1.19 7.74 -2.39 -0.02 1.18 16 24 H 0.09 1.19 7.75 -2.39 -0.02 1.17 16 25 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.15 2.70 5.86 -2.91 -0.02 2.68 16 27 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 28 H 0.13 3.87 6.17 -2.91 -0.02 3.85 16 29 H 0.10 4.63 6.17 -2.91 -0.02 4.61 16 30 H 0.10 5.70 6.18 -2.91 -0.02 5.69 16 31 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 32 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 33 H 0.13 4.64 6.17 -2.91 -0.02 4.62 16 34 H 0.11 4.30 6.18 -2.91 -0.02 4.28 16 Total: -1.00 -61.69 298.95 5.27 -56.42 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 1.12 Total: 27.67 kcal Atomic # 6 Polarization: -78.82 SS G_CDS: 3.15 Total: -75.67 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.24 Total: -42.08 kcal Atomic # 14 Polarization: 37.27 SS G_CDS: 2.03 Total: 39.30 kcal Atomic # 16 Polarization: -4.37 SS G_CDS: -1.27 Total: -5.64 kcal Total: -61.69 5.27 -56.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241314219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.188 kcal (2) G-P(sol) polarization free energy of solvation -61.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds