Wall clock time and date at job start Mon Mar 30 2020 01:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33156 * 120.00514 * 2 1 4 4 C 1.50697 * 119.99710 * 359.71997 * 3 2 1 5 5 C 1.47143 * 120.00436 * 180.02562 * 3 2 1 6 6 C 1.39554 * 120.63742 * 74.43284 * 5 3 2 7 7 C 1.37882 * 119.91448 * 179.74857 * 6 5 3 8 8 C 1.38819 * 121.30368 * 0.57098 * 7 6 5 9 9 C 1.50692 * 119.33223 * 179.71531 * 8 7 6 10 10 F 1.39910 * 109.47254 * 269.97778 * 9 8 7 11 11 F 1.39904 * 109.47408 * 29.97638 * 9 8 7 12 12 F 1.39901 * 109.47588 * 149.97656 * 9 8 7 13 13 C 1.36318 * 121.33894 * 359.69063 * 8 7 6 14 14 C 1.40873 * 119.95507 * 0.02562 * 13 8 7 15 15 C 1.40759 * 120.61998 * 179.97438 * 14 13 8 16 16 H 1.07992 * 120.00153 * 204.53922 * 15 14 13 17 17 C 1.40101 * 119.99933 * 24.54530 * 15 14 13 18 18 N 1.30764 * 120.00071 * 17.41315 * 17 15 14 19 19 Si 1.86793 * 120.00313 * 197.41358 * 17 15 14 20 20 H 1.48504 * 109.46987 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47369 * 119.99582 * 19 17 15 22 22 H 1.48500 * 109.47575 * 240.00115 * 19 17 15 23 23 H 1.09007 * 109.47027 * 300.00590 * 1 2 3 24 24 H 1.08996 * 109.46653 * 59.99796 * 1 2 3 25 25 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 26 26 H 1.08007 * 119.99890 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47320 * 270.27982 * 4 3 2 28 28 H 1.08998 * 109.47173 * 30.27645 * 4 3 2 29 29 H 1.08999 * 109.47007 * 150.28376 * 4 3 2 30 30 H 1.07997 * 120.04425 * 0.03363 * 6 5 3 31 31 H 1.08001 * 119.35061 * 180.26103 * 7 6 5 32 32 H 1.08000 * 120.02043 * 180.02562 * 13 8 7 33 33 H 0.96995 * 120.00171 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1728 1.1531 0.0000 4 6 1.4194 2.4582 -0.0064 5 6 3.6443 1.1531 -0.0006 6 6 4.3550 0.8311 -1.1576 7 6 5.7337 0.8408 -1.1428 8 6 6.4404 1.1550 0.0100 9 6 7.9470 1.1458 -0.0222 10 9 8.4129 -0.1295 0.3155 11 9 8.3881 1.4782 -1.3076 12 9 8.4388 2.0800 0.8957 13 6 5.7993 1.4722 1.1704 14 6 4.3913 1.4849 1.2153 15 6 3.7149 1.8099 2.4061 16 1 2.7092 1.4524 2.5707 17 6 4.3463 2.5971 3.3779 18 7 5.3983 3.3067 3.0622 19 14 3.6854 2.6333 5.1247 20 1 2.4960 1.7495 5.2223 21 1 4.7345 2.1556 6.0609 22 1 3.3006 4.0229 5.4798 23 1 -0.3633 0.5140 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 2.0470 -0.9354 0.0004 27 1 1.2378 2.7679 -1.0356 28 1 0.4670 2.3304 0.5080 29 1 2.0086 3.2203 0.5037 30 1 3.8258 0.5791 -2.0647 31 1 6.2745 0.5943 -2.0445 32 1 6.3703 1.7137 2.0547 33 1 5.8352 3.8520 3.7349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242757838.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:19 Heat of formation + Delta-G solvation = -139.025005 kcal Electronic energy + Delta-G solvation = -20612.313469 eV Core-core repulsion = 16994.170157 eV Total energy + Delta-G solvation = -3618.143312 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.093 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.35837 -46.88082 -46.82194 -37.92363 -35.21350 -33.99309 -30.71295 -29.81615 -28.27764 -25.86779 -25.44700 -23.66621 -21.26119 -20.56008 -18.04256 -17.70518 -17.47597 -17.36429 -16.36917 -15.28966 -15.07440 -14.03125 -13.81200 -13.54891 -13.46459 -13.32128 -13.31261 -13.08240 -13.01871 -12.88684 -12.68966 -12.54759 -11.97773 -11.81188 -11.48671 -11.33067 -11.21027 -11.09340 -10.75464 -10.68461 -10.44167 -9.94975 -9.64470 -9.42564 -8.04961 -7.72889 -7.52890 -7.00186 -4.55554 2.22885 2.69198 2.94029 2.97106 3.02210 3.06769 3.57553 3.76414 4.29150 4.75828 4.98235 5.08487 5.46141 5.61319 5.73882 5.92863 5.98621 6.06049 6.13729 6.25267 6.32043 6.35567 6.63208 6.68708 6.81423 6.90180 7.02787 7.19877 7.27261 7.58767 7.67504 7.74358 7.80415 7.93862 8.30513 8.58043 8.67248 9.91102 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.013637 B = 0.008567 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.679760 B = 3267.485281 C = 4886.645070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.204 4.204 3 C -0.025 4.025 4 C -0.114 4.114 5 C -0.169 4.169 6 C -0.069 4.069 7 C -0.218 4.218 8 C -0.149 4.149 9 C 0.501 3.499 10 F -0.191 7.191 11 F -0.191 7.191 12 F -0.181 7.181 13 C -0.127 4.127 14 C 0.124 3.876 15 C -0.433 4.433 16 H 0.088 0.912 17 C 0.073 3.927 18 N -0.775 5.775 19 Si 0.910 3.090 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.272 1.272 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.581 -1.827 -2.049 3.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.222 4.222 3 C -0.025 4.025 4 C -0.171 4.171 5 C -0.171 4.171 6 C -0.088 4.088 7 C -0.238 4.238 8 C -0.151 4.151 9 C 0.447 3.553 10 F -0.173 7.173 11 F -0.172 7.172 12 F -0.163 7.163 13 C -0.146 4.146 14 C 0.121 3.879 15 C -0.461 4.461 16 H 0.106 0.894 17 C -0.148 4.148 18 N -0.398 5.398 19 Si 0.734 3.266 20 H -0.180 1.180 21 H -0.194 1.194 22 H -0.197 1.197 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.120 0.880 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.149 0.851 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.368 -1.637 -1.940 3.471 hybrid contribution 0.267 0.103 0.744 0.798 sum -2.100 -1.534 -1.196 2.862 Atomic orbital electron populations 1.20684 0.94133 1.00857 1.00924 1.22989 0.94659 0.97349 1.07173 1.20066 0.92416 0.93996 0.96022 1.20819 0.99095 0.96463 1.00680 1.19855 0.90954 1.12923 0.93362 1.20484 0.92820 0.99304 0.96144 1.19777 0.94076 1.13621 0.96327 1.19281 0.87846 1.09850 0.98115 1.18886 0.90872 0.72916 0.72602 1.93138 1.90807 1.41012 1.92329 1.93097 1.91501 1.92472 1.40137 1.93154 1.89805 1.66128 1.67190 1.20844 0.95220 1.02445 0.96092 1.18471 0.90309 0.88269 0.90803 1.19567 1.01510 1.25837 0.99206 0.89425 1.26078 0.94123 0.93286 1.01330 1.69769 1.16447 1.17620 1.35954 0.86206 0.80267 0.79172 0.80979 1.18038 1.19402 1.19675 0.92379 0.92744 0.93178 0.87995 0.92514 0.92619 0.91069 0.88330 0.88418 0.85124 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 8.91 36.00 0.32 -1.22 16 2 C -0.20 -3.61 9.98 -36.08 -0.36 -3.97 16 3 C -0.02 -0.49 4.39 -102.78 -0.45 -0.94 16 4 C -0.11 -2.01 9.55 36.00 0.34 -1.66 16 5 C -0.17 -3.84 5.46 -102.46 -0.56 -4.40 16 6 C -0.07 -1.50 9.80 -39.22 -0.38 -1.88 16 7 C -0.22 -4.81 9.33 -39.50 -0.37 -5.18 16 8 C -0.15 -3.48 5.42 -105.10 -0.57 -4.04 16 9 C 0.50 10.69 3.34 36.00 0.12 10.81 16 10 F -0.19 -3.94 17.30 2.25 0.04 -3.90 16 11 F -0.19 -3.84 16.39 2.25 0.04 -3.80 16 12 F -0.18 -3.96 16.38 2.25 0.04 -3.92 16 13 C -0.13 -3.17 7.97 -39.28 -0.31 -3.48 16 14 C 0.12 3.10 5.74 -104.62 -0.60 2.50 16 15 C -0.43 -10.56 8.59 -37.93 -0.33 -10.88 16 16 H 0.09 2.09 7.38 -52.49 -0.39 1.70 16 17 C 0.07 1.69 5.16 -17.31 -0.09 1.60 16 18 N -0.77 -18.77 10.95 55.56 0.61 -18.16 16 19 Si 0.91 17.52 29.59 -169.99 -5.03 12.48 16 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 H 0.06 0.80 7.41 -51.93 -0.38 0.42 16 24 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.10 1.86 8.05 -52.48 -0.42 1.43 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.87 6.51 -51.93 -0.34 0.53 16 29 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 30 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.10 1.97 7.52 -52.49 -0.39 1.57 16 32 H 0.13 3.39 5.63 -52.49 -0.30 3.09 16 33 H 0.29 6.32 8.29 -40.82 -0.34 5.98 16 LS Contribution 296.92 15.07 4.47 4.47 Total: -1.00 -24.93 296.92 -6.54 -31.47 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -3.47 Total: 4.12 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -3.24 Total: -22.76 kcal Atomic # 7 Polarization: -18.77 SS G_CDS: 0.61 Total: -18.16 kcal Atomic # 9 Polarization: -11.74 SS G_CDS: 0.11 Total: -11.62 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -24.93 -6.54 -31.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242757838.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.556 kcal (2) G-P(sol) polarization free energy of solvation -24.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds