Wall clock time and date at job start Mon Mar 30 2020 01:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33156 * 120.00514 * 2 1 4 4 C 1.50697 * 119.99710 * 359.71997 * 3 2 1 5 5 C 1.47143 * 120.00436 * 180.02562 * 3 2 1 6 6 C 1.39554 * 120.63742 * 74.43284 * 5 3 2 7 7 C 1.37882 * 119.91448 * 179.74857 * 6 5 3 8 8 C 1.38819 * 121.30368 * 0.57098 * 7 6 5 9 9 C 1.50692 * 119.33223 * 179.71531 * 8 7 6 10 10 F 1.39910 * 109.47254 * 269.97778 * 9 8 7 11 11 F 1.39904 * 109.47408 * 29.97638 * 9 8 7 12 12 F 1.39901 * 109.47588 * 149.97656 * 9 8 7 13 13 C 1.36318 * 121.33894 * 359.69063 * 8 7 6 14 14 C 1.40873 * 119.95507 * 0.02562 * 13 8 7 15 15 C 1.40759 * 120.61998 * 179.97438 * 14 13 8 16 16 H 1.07992 * 120.00153 * 204.53922 * 15 14 13 17 17 C 1.40101 * 119.99933 * 24.54530 * 15 14 13 18 18 N 1.30764 * 120.00071 * 17.41315 * 17 15 14 19 19 Si 1.86793 * 120.00313 * 197.41358 * 17 15 14 20 20 H 1.48504 * 109.46987 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47369 * 119.99582 * 19 17 15 22 22 H 1.48500 * 109.47575 * 240.00115 * 19 17 15 23 23 H 1.09007 * 109.47027 * 300.00590 * 1 2 3 24 24 H 1.08996 * 109.46653 * 59.99796 * 1 2 3 25 25 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 26 26 H 1.08007 * 119.99890 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47320 * 270.27982 * 4 3 2 28 28 H 1.08998 * 109.47173 * 30.27645 * 4 3 2 29 29 H 1.08999 * 109.47007 * 150.28376 * 4 3 2 30 30 H 1.07997 * 120.04425 * 0.03363 * 6 5 3 31 31 H 1.08001 * 119.35061 * 180.26103 * 7 6 5 32 32 H 1.08000 * 120.02043 * 180.02562 * 13 8 7 33 33 H 0.96995 * 120.00171 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1728 1.1531 0.0000 4 6 1.4194 2.4582 -0.0064 5 6 3.6443 1.1531 -0.0006 6 6 4.3550 0.8311 -1.1576 7 6 5.7337 0.8408 -1.1428 8 6 6.4404 1.1550 0.0100 9 6 7.9470 1.1458 -0.0222 10 9 8.4129 -0.1295 0.3155 11 9 8.3881 1.4782 -1.3076 12 9 8.4388 2.0800 0.8957 13 6 5.7993 1.4722 1.1704 14 6 4.3913 1.4849 1.2153 15 6 3.7149 1.8099 2.4061 16 1 2.7092 1.4524 2.5707 17 6 4.3463 2.5971 3.3779 18 7 5.3983 3.3067 3.0622 19 14 3.6854 2.6333 5.1247 20 1 2.4960 1.7495 5.2223 21 1 4.7345 2.1556 6.0609 22 1 3.3006 4.0229 5.4798 23 1 -0.3633 0.5140 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 2.0470 -0.9354 0.0004 27 1 1.2378 2.7679 -1.0356 28 1 0.4670 2.3304 0.5080 29 1 2.0086 3.2203 0.5037 30 1 3.8258 0.5791 -2.0647 31 1 6.2745 0.5943 -2.0445 32 1 6.3703 1.7137 2.0547 33 1 5.8352 3.8520 3.7349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242757838.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:19 Heat of formation + Delta-G solvation = -148.362331 kcal Electronic energy + Delta-G solvation = -20612.718365 eV Core-core repulsion = 16994.170157 eV Total energy + Delta-G solvation = -3618.548209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.093 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.07174 -48.57456 -48.54425 -39.64191 -36.69823 -35.75370 -32.33540 -31.59537 -29.64891 -27.55028 -27.10781 -25.19453 -23.03950 -22.24023 -19.79631 -19.41556 -19.19397 -18.87363 -18.16031 -16.86633 -16.68688 -15.73809 -15.50013 -15.21818 -15.14598 -15.01718 -14.78792 -14.73863 -14.71747 -14.40407 -14.19009 -14.06805 -13.50153 -13.23142 -13.04063 -12.86229 -12.80184 -12.67976 -12.36822 -12.20385 -11.92919 -11.66007 -11.28667 -11.15656 -9.63634 -9.49296 -9.18890 -8.72839 -6.37990 0.47219 0.96218 1.38098 1.45956 1.48699 1.53120 1.83816 2.15987 2.55005 3.00524 3.26174 3.32847 3.71023 4.20229 4.38679 4.42093 4.58755 4.67204 4.73657 4.88234 4.97960 5.06352 5.07134 5.19280 5.23111 5.27774 5.29239 5.44465 5.70318 5.82482 5.98066 6.06929 6.15449 6.28354 6.50269 6.79103 6.87658 8.20305 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.013637 B = 0.008567 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.679760 B = 3267.485281 C = 4886.645070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.185 4.185 3 C -0.060 4.060 4 C -0.105 4.105 5 C -0.168 4.168 6 C -0.077 4.077 7 C -0.218 4.218 8 C -0.162 4.162 9 C 0.508 3.492 10 F -0.186 7.186 11 F -0.181 7.181 12 F -0.186 7.186 13 C -0.154 4.154 14 C 0.094 3.906 15 C -0.455 4.455 16 H 0.086 0.914 17 C 0.036 3.964 18 N -0.809 5.809 19 Si 0.978 3.022 20 H -0.253 1.253 21 H -0.267 1.267 22 H -0.264 1.264 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 -2.397 -2.481 5.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.203 4.203 3 C -0.060 4.060 4 C -0.161 4.161 5 C -0.170 4.170 6 C -0.095 4.095 7 C -0.237 4.237 8 C -0.164 4.164 9 C 0.454 3.546 10 F -0.168 7.168 11 F -0.163 7.163 12 F -0.168 7.168 13 C -0.174 4.174 14 C 0.091 3.909 15 C -0.483 4.483 16 H 0.104 0.896 17 C -0.182 4.182 18 N -0.433 5.433 19 Si 0.798 3.202 20 H -0.177 1.177 21 H -0.192 1.192 22 H -0.188 1.188 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.038 -2.210 -2.391 5.188 hybrid contribution 0.775 0.204 0.751 1.099 sum -3.263 -2.006 -1.639 4.166 Atomic orbital electron populations 1.20732 0.91087 1.02565 1.01978 1.23238 0.96867 0.96138 1.04069 1.20152 0.91082 0.95658 0.99134 1.20744 0.99187 0.94539 1.01652 1.20305 0.92925 1.10922 0.92818 1.20855 0.92884 0.98848 0.96941 1.20116 0.94631 1.12424 0.96531 1.19488 0.88967 1.09805 0.98114 1.18625 0.90109 0.73010 0.72852 1.93143 1.90653 1.40637 1.92339 1.93111 1.91321 1.92419 1.39405 1.93143 1.89755 1.66378 1.67487 1.20754 0.95593 1.04763 0.96273 1.18867 0.90709 0.89180 0.92142 1.19685 1.01675 1.26860 1.00055 0.89622 1.26858 0.94151 0.92406 1.04776 1.69825 1.17707 1.18414 1.37327 0.85205 0.79577 0.79410 0.76005 1.17651 1.19182 1.18828 0.91745 0.90993 0.91285 0.88898 0.90843 0.90483 0.93934 0.85573 0.86341 0.86981 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.64 8.91 71.23 0.63 -2.01 16 2 C -0.18 -6.17 9.98 24.54 0.24 -5.92 16 3 C -0.06 -2.30 4.39 -18.67 -0.08 -2.39 16 4 C -0.10 -3.54 9.55 71.23 0.68 -2.86 16 5 C -0.17 -7.61 5.46 -18.47 -0.10 -7.71 16 6 C -0.08 -3.26 9.80 22.50 0.22 -3.04 16 7 C -0.22 -9.41 9.33 22.32 0.21 -9.21 16 8 C -0.16 -7.62 5.42 -20.18 -0.11 -7.73 16 9 C 0.51 21.66 3.34 71.23 0.24 21.90 16 10 F -0.19 -7.61 17.30 44.97 0.78 -6.83 16 11 F -0.18 -7.13 16.39 44.97 0.74 -6.39 16 12 F -0.19 -8.26 16.38 44.97 0.74 -7.52 16 13 C -0.15 -7.96 7.97 22.47 0.18 -7.78 16 14 C 0.09 4.79 5.74 -19.86 -0.11 4.67 16 15 C -0.46 -22.68 8.59 23.34 0.20 -22.48 16 16 H 0.09 4.15 7.38 -2.91 -0.02 4.13 16 17 C 0.04 1.69 5.16 85.30 0.44 2.13 16 18 N -0.81 -40.42 10.95 21.85 0.24 -40.18 16 19 Si 0.98 36.10 29.59 68.60 2.03 38.13 16 20 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 21 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 22 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 23 H 0.06 1.55 7.41 -2.38 -0.02 1.53 16 24 H 0.07 1.57 8.10 -2.39 -0.02 1.55 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.09 3.23 8.05 -2.91 -0.02 3.21 16 27 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.22 6.51 -2.39 -0.02 2.20 16 29 H 0.04 1.66 8.11 -2.39 -0.02 1.64 16 30 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 31 H 0.12 4.55 7.52 -2.91 -0.02 4.53 16 32 H 0.11 6.10 5.63 -2.91 -0.02 6.08 16 33 H 0.29 13.27 8.29 -92.71 -0.77 12.50 16 Total: -1.00 -54.02 296.92 8.30 -45.72 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 1.13 Total: 19.49 kcal Atomic # 6 Polarization: -45.06 SS G_CDS: 2.64 Total: -42.42 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.24 Total: -40.18 kcal Atomic # 9 Polarization: -22.99 SS G_CDS: 2.25 Total: -20.74 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -54.02 8.30 -45.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242757838.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.641 kcal (2) G-P(sol) polarization free energy of solvation -54.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds