Wall clock time and date at job start Mon Mar 30 2020 01:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33154 * 119.99872 * 2 1 4 4 C 1.50702 * 120.00247 * 0.02562 * 3 2 1 5 5 C 1.47143 * 119.99858 * 180.02562 * 3 2 1 6 6 C 1.39556 * 120.63382 * 74.98272 * 5 3 2 7 7 C 1.37876 * 119.91558 * 180.02562 * 6 5 3 8 8 C 1.50705 * 119.34863 * 179.97438 * 7 6 5 9 9 F 1.39892 * 109.47446 * 89.99586 * 8 7 6 10 10 F 1.39906 * 109.46823 * 209.99788 * 8 7 6 11 11 F 1.39899 * 109.46796 * 329.99442 * 8 7 6 12 12 C 1.38817 * 121.30636 * 359.97438 * 7 6 5 13 13 C 1.36315 * 121.33768 * 359.73957 * 12 7 6 14 14 C 1.40879 * 119.95381 * 0.52053 * 13 12 7 15 15 C 1.40760 * 120.61907 * 179.76070 * 14 13 12 16 16 H 1.08000 * 119.99945 * 208.50349 * 15 14 13 17 17 C 1.40105 * 119.99937 * 28.51485 * 15 14 13 18 18 N 1.30759 * 120.00001 * 197.57803 * 17 15 14 19 19 Si 1.86797 * 120.00029 * 17.57135 * 17 15 14 20 20 H 1.48497 * 109.47345 * 270.00131 * 19 17 15 21 21 H 1.48494 * 109.47053 * 30.00347 * 19 17 15 22 22 H 1.48500 * 109.47152 * 150.00414 * 19 17 15 23 23 H 1.09010 * 109.46853 * 299.99750 * 1 2 3 24 24 H 1.08998 * 109.47555 * 59.99139 * 1 2 3 25 25 H 1.08999 * 109.47372 * 179.97438 * 1 2 3 26 26 H 1.07996 * 119.99651 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47211 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.47033 * 299.99608 * 4 3 2 29 29 H 1.09001 * 109.47047 * 59.99507 * 4 3 2 30 30 H 1.08005 * 120.04154 * 359.97438 * 6 5 3 31 31 H 1.07996 * 119.33499 * 180.02562 * 12 7 6 32 32 H 1.07998 * 120.02292 * 180.28633 * 13 12 7 33 33 H 0.97006 * 119.99742 * 355.44519 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1728 1.1532 0.0000 4 6 1.4193 2.4583 0.0006 5 6 3.6442 1.1532 -0.0006 6 6 4.3548 0.8423 -1.1607 7 6 5.7335 0.8462 -1.1444 8 6 6.4881 0.5080 -2.4043 9 9 6.7219 1.6772 -3.1360 10 9 7.7102 -0.0857 -2.0708 11 9 5.7326 -0.3816 -3.1757 12 6 6.4403 1.1556 0.0096 13 6 5.7993 1.4726 1.1701 14 6 4.3913 1.4798 1.2166 15 6 3.7150 1.8002 2.4088 16 1 2.7363 1.3864 2.6023 17 6 4.3113 2.6559 3.3442 18 7 3.8696 2.6892 4.5745 19 14 5.7374 3.7492 2.8339 20 1 7.0167 3.0269 3.0497 21 1 5.6030 4.0995 1.3971 22 1 5.7260 4.9903 3.6492 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 2.0469 -0.9353 -0.0004 27 1 2.1276 3.2868 0.0010 28 1 0.7923 2.5163 -0.8892 29 1 0.7929 2.5158 0.8908 30 1 3.8255 0.5981 -2.0699 31 1 7.5200 1.1495 -0.0136 32 1 6.3704 1.7143 2.0543 33 1 3.0880 2.1714 4.8234 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242758092.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:22 Heat of formation + Delta-G solvation = -144.572452 kcal Electronic energy + Delta-G solvation = -20625.087121 eV Core-core repulsion = 17006.703254 eV Total energy + Delta-G solvation = -3618.383867 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.45166 -46.99587 -46.91701 -38.16995 -35.28226 -34.19050 -31.07537 -30.22835 -28.11813 -26.82740 -24.87555 -23.26465 -21.75696 -20.53462 -18.49751 -18.13053 -17.79206 -17.60573 -16.62575 -14.86892 -14.79616 -14.58563 -14.08605 -13.81937 -13.79243 -13.43771 -13.34248 -13.25147 -13.19499 -13.14230 -12.88707 -12.60432 -11.99781 -11.88487 -11.74623 -11.49189 -11.31348 -11.08736 -10.75845 -10.54862 -10.28443 -10.05486 -9.59450 -9.32502 -8.17163 -8.08416 -7.78589 -7.51103 -4.88711 2.13417 2.41623 2.83238 3.03894 3.19160 3.39380 3.50795 3.78565 4.13310 4.76020 4.86685 4.94403 5.29686 5.49997 5.66541 5.78815 5.83679 5.90713 5.93880 6.01521 6.21235 6.26761 6.43512 6.50183 6.53513 6.66991 7.03626 7.06733 7.18383 7.26314 7.45259 7.49037 7.57906 7.65473 8.08713 8.18019 8.42779 9.63827 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014187 B = 0.008710 C = 0.005933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.140862 B = 3213.764539 C = 4718.470320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.198 4.198 3 C -0.030 4.030 4 C -0.107 4.107 5 C -0.176 4.176 6 C -0.016 4.016 7 C -0.331 4.331 8 C 0.516 3.484 9 F -0.194 7.194 10 F -0.193 7.193 11 F -0.193 7.193 12 C -0.019 4.019 13 C -0.255 4.255 14 C 0.124 3.876 15 C -0.469 4.469 16 H 0.087 0.913 17 C 0.041 3.959 18 N -0.787 5.787 19 Si 1.071 2.929 20 H -0.272 1.272 21 H -0.258 1.258 22 H -0.286 1.286 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 -0.920 -6.504 6.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.216 4.216 3 C -0.030 4.030 4 C -0.164 4.164 5 C -0.177 4.177 6 C -0.034 4.034 7 C -0.333 4.333 8 C 0.462 3.538 9 F -0.176 7.176 10 F -0.174 7.174 11 F -0.175 7.175 12 C -0.038 4.038 13 C -0.274 4.274 14 C 0.120 3.880 15 C -0.495 4.495 16 H 0.105 0.895 17 C -0.182 4.182 18 N -0.407 5.407 19 Si 0.896 3.104 20 H -0.199 1.199 21 H -0.182 1.182 22 H -0.213 1.213 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.121 0.879 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.148 0.151 -5.841 5.844 hybrid contribution -0.974 -1.419 -0.638 1.836 sum -0.826 -1.268 -6.479 6.653 Atomic orbital electron populations 1.20682 0.93925 1.01038 1.01043 1.23027 0.94857 0.97343 1.06344 1.20008 0.92064 0.94135 0.96803 1.20739 0.99293 0.95974 1.00400 1.19595 0.91037 1.14324 0.92707 1.20326 0.91608 0.94823 0.96691 1.18783 0.94061 1.27804 0.92668 1.18533 0.76771 0.73550 0.84924 1.93142 1.94851 1.49438 1.80166 1.93094 1.47201 1.84574 1.92559 1.93093 1.76341 1.69820 1.78201 1.19946 0.97973 0.94171 0.91702 1.20721 0.94480 1.14389 0.97807 1.18834 0.90949 0.87175 0.91057 1.20799 1.04842 1.23081 1.00783 0.89536 1.27560 1.02159 0.96926 0.91583 1.70511 1.19262 1.34127 1.16815 0.83612 0.73976 0.75201 0.77604 1.19855 1.18169 1.21317 0.92400 0.92527 0.93039 0.87946 0.91918 0.92591 0.92076 0.87761 0.87950 0.86880 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.17 36.01 0.33 -1.24 16 2 C -0.20 -3.52 9.98 -36.08 -0.36 -3.88 16 3 C -0.03 -0.59 4.45 -102.78 -0.46 -1.04 16 4 C -0.11 -1.87 9.04 36.01 0.33 -1.54 16 5 C -0.18 -3.87 5.39 -102.46 -0.55 -4.42 16 6 C -0.02 -0.34 9.12 -39.22 -0.36 -0.70 16 7 C -0.33 -6.95 5.46 -104.54 -0.57 -7.52 16 8 C 0.52 9.87 3.34 36.01 0.12 9.99 16 9 F -0.19 -3.67 17.30 2.25 0.04 -3.63 16 10 F -0.19 -3.58 16.39 2.25 0.04 -3.54 16 11 F -0.19 -3.59 16.40 2.25 0.04 -3.55 16 12 C -0.02 -0.41 9.26 -40.06 -0.37 -0.78 16 13 C -0.26 -5.80 7.23 -39.28 -0.28 -6.08 16 14 C 0.12 2.93 5.31 -104.62 -0.56 2.37 16 15 C -0.47 -11.38 8.92 -37.93 -0.34 -11.71 16 16 H 0.09 2.18 7.63 -52.49 -0.40 1.78 16 17 C 0.04 0.98 5.43 -17.31 -0.09 0.88 16 18 N -0.79 -19.21 13.65 55.56 0.76 -18.45 16 19 Si 1.07 22.42 24.90 -169.99 -4.23 18.19 16 20 H -0.27 -5.42 6.44 56.52 0.36 -5.05 16 21 H -0.26 -5.41 7.02 56.52 0.40 -5.01 16 22 H -0.29 -5.83 7.11 56.52 0.40 -5.43 16 23 H 0.06 0.82 7.87 -51.92 -0.41 0.41 16 24 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.10 1.88 8.05 -52.49 -0.42 1.46 16 27 H 0.06 1.15 7.99 -51.93 -0.41 0.73 16 28 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 29 H 0.06 1.02 7.87 -51.93 -0.41 0.62 16 30 H 0.10 2.03 7.55 -52.48 -0.40 1.64 16 31 H 0.10 1.95 7.53 -52.49 -0.39 1.56 16 32 H 0.11 2.50 4.37 -52.49 -0.23 2.27 16 33 H 0.29 6.90 8.73 -40.82 -0.36 6.54 16 LS Contribution 292.77 15.07 4.41 4.41 Total: -1.00 -24.14 292.77 -5.62 -29.77 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.51 Total: 2.49 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -3.16 Total: -25.68 kcal Atomic # 7 Polarization: -19.21 SS G_CDS: 0.76 Total: -18.45 kcal Atomic # 9 Polarization: -10.84 SS G_CDS: 0.11 Total: -10.73 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.23 Total: 18.19 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -24.14 -5.62 -29.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242758092.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.805 kcal (2) G-P(sol) polarization free energy of solvation -24.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds