Wall clock time and date at job start Mon Mar 30 2020 01:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33086 * 120.00639 * 2 1 4 4 C 1.50703 * 119.99552 * 0.02562 * 3 2 1 5 5 C 1.47275 * 120.00475 * 180.02562 * 3 2 1 6 6 C 1.40205 * 119.90737 * 64.99200 * 5 3 2 7 7 C 1.36143 * 120.09829 * 179.97438 * 6 5 3 8 8 C 1.41001 * 119.89872 * 0.02562 * 7 6 5 9 9 C 1.40929 * 120.09394 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00143 * 205.55637 * 9 8 7 11 11 C 1.40031 * 120.00169 * 25.55402 * 9 8 7 12 12 N 1.30795 * 119.99628 * 15.60998 * 11 9 8 13 13 Si 1.86794 * 120.00160 * 195.61257 * 11 9 8 14 14 H 1.48499 * 109.47243 * 94.96592 * 13 11 9 15 15 H 1.48506 * 109.46832 * 214.96541 * 13 11 9 16 16 H 1.48504 * 109.47290 * 334.96061 * 13 11 9 17 17 C 1.40974 * 119.81260 * 359.97438 * 8 7 6 18 18 C 1.50699 * 120.05151 * 180.02562 * 17 8 7 19 19 F 1.39891 * 109.47451 * 179.97438 * 18 17 8 20 20 F 1.39904 * 109.47278 * 300.00250 * 18 17 8 21 21 F 1.39908 * 109.47024 * 59.99899 * 18 17 8 22 22 C 1.36176 * 119.90022 * 359.74079 * 17 8 7 23 23 H 1.08996 * 109.47745 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46958 * 300.00175 * 1 2 3 25 25 H 1.09000 * 109.47211 * 59.99074 * 1 2 3 26 26 H 1.08006 * 119.99927 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46914 * 90.00119 * 4 3 2 28 28 H 1.09005 * 109.47387 * 329.99638 * 4 3 2 29 29 H 1.09005 * 109.47164 * 210.00201 * 4 3 2 30 30 H 1.07998 * 119.94831 * 0.02562 * 6 5 3 31 31 H 1.08000 * 120.04844 * 179.97438 * 7 6 5 32 32 H 0.96994 * 119.99943 * 180.02562 * 12 11 9 33 33 H 1.07994 * 119.95016 * 180.25617 * 22 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1725 1.1525 0.0000 4 6 1.4190 2.4576 0.0006 5 6 3.6452 1.1524 -0.0006 6 6 4.3439 0.6389 -1.1024 7 6 5.7053 0.6374 -1.1072 8 6 6.4126 1.1529 -0.0018 9 6 7.8219 1.1529 -0.0022 10 1 8.3622 1.1437 0.9329 11 6 8.5217 1.1647 -1.2150 12 7 7.9036 1.4804 -2.3236 13 14 10.3380 0.7297 -1.2497 14 1 10.4961 -0.7096 -1.5795 15 1 11.0243 1.5516 -2.2787 16 1 10.9376 1.0013 0.0815 17 6 5.7061 1.6683 1.1040 18 6 6.4567 2.2211 2.2881 19 9 5.5453 2.6698 3.2498 20 9 7.2615 1.2184 2.8396 21 9 7.2603 3.2888 1.8737 22 6 4.3444 1.6712 1.0980 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 2.0470 -0.9354 -0.0004 27 1 1.2378 2.7720 1.0284 28 1 0.4664 2.3275 -0.5130 29 1 2.0079 3.2174 -0.5134 30 1 3.8012 0.2447 -1.9488 31 1 6.2426 0.2412 -1.9562 32 1 8.3881 1.4882 -3.1638 33 1 3.8024 2.0696 1.9428 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242759146.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:16 Heat of formation + Delta-G solvation = -150.197855 kcal Electronic energy + Delta-G solvation = -20678.783342 eV Core-core repulsion = 17060.155539 eV Total energy + Delta-G solvation = -3618.627803 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.093 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.89166 -48.44591 -48.29547 -39.88025 -37.08652 -35.38009 -32.54009 -31.70160 -29.73797 -27.82829 -26.69382 -25.33625 -22.90033 -22.34633 -19.66434 -19.34512 -19.20121 -19.05978 -17.83261 -17.13542 -16.27026 -15.74769 -15.66577 -15.28273 -15.17807 -14.85307 -14.70679 -14.60544 -14.55139 -14.38794 -14.31973 -13.81019 -13.42464 -13.29952 -13.18212 -12.88583 -12.79716 -12.70284 -12.54976 -12.13501 -11.93729 -11.52619 -11.37240 -11.11618 -9.79036 -9.69365 -9.11118 -8.79621 -6.52468 0.62784 0.84364 1.34563 1.36870 1.49458 1.56543 2.06172 2.14946 2.57732 3.31018 3.34308 3.48931 3.89209 4.14663 4.34272 4.36262 4.54980 4.60392 4.68067 4.83801 4.97562 5.01316 5.11361 5.13362 5.20656 5.23371 5.25009 5.48482 5.64269 5.84432 5.94435 6.04349 6.12687 6.25214 6.47610 6.69477 6.78785 8.14153 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.006959 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.929833 B = 4022.586153 C = 5080.039797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.177 4.177 3 C -0.078 4.078 4 C -0.110 4.110 5 C -0.187 4.187 6 C -0.068 4.068 7 C -0.179 4.179 8 C 0.122 3.878 9 C -0.476 4.476 10 H 0.080 0.920 11 C 0.041 3.959 12 N -0.800 5.800 13 Si 0.980 3.020 14 H -0.255 1.255 15 H -0.261 1.261 16 H -0.262 1.262 17 C -0.325 4.325 18 C 0.524 3.476 19 F -0.189 7.189 20 F -0.192 7.192 21 F -0.190 7.190 22 C -0.033 4.033 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.296 0.704 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.859 -0.819 1.817 7.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.196 4.196 3 C -0.079 4.079 4 C -0.166 4.166 5 C -0.188 4.188 6 C -0.087 4.087 7 C -0.199 4.199 8 C 0.118 3.882 9 C -0.504 4.504 10 H 0.098 0.902 11 C -0.177 4.177 12 N -0.424 5.424 13 Si 0.800 3.200 14 H -0.180 1.180 15 H -0.186 1.186 16 H -0.186 1.186 17 C -0.327 4.327 18 C 0.471 3.529 19 F -0.170 7.170 20 F -0.174 7.174 21 F -0.172 7.172 22 C -0.051 4.051 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.808 -0.744 1.587 7.030 hybrid contribution 1.278 0.007 0.092 1.282 sum -5.529 -0.737 1.678 5.825 Atomic orbital electron populations 1.20768 0.90943 1.02698 1.02233 1.23295 0.96981 0.96314 1.02974 1.20325 0.90826 0.96050 1.00649 1.20837 0.99588 0.93984 1.02223 1.18495 0.92926 1.11403 0.95936 1.20901 0.93820 0.97250 0.96679 1.21008 0.93523 1.05213 1.00113 1.17545 0.93718 0.86712 0.90187 1.20005 0.91867 1.43840 0.94656 0.90180 1.26791 1.05873 0.91081 0.93986 1.69808 1.40876 1.30969 1.00740 0.85199 0.75523 0.79704 0.79530 1.17970 1.18556 1.18616 1.19526 0.94690 1.19769 0.98754 1.18210 0.76856 0.75141 0.82729 1.93044 1.67215 1.89953 1.66831 1.93089 1.75421 1.61645 1.87218 1.93121 1.75435 1.58196 1.90425 1.20353 0.91685 0.95699 0.97404 0.91405 0.91172 0.90963 0.88863 0.90950 0.89787 0.93306 0.86919 0.86690 0.89250 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 8.91 71.23 0.63 -1.67 16 2 C -0.18 -5.24 9.90 24.53 0.24 -5.00 16 3 C -0.08 -2.63 5.42 -18.64 -0.10 -2.74 16 4 C -0.11 -3.03 9.54 71.24 0.68 -2.35 16 5 C -0.19 -7.83 5.32 -19.95 -0.11 -7.94 16 6 C -0.07 -3.03 9.64 22.26 0.21 -2.82 16 7 C -0.18 -9.02 8.61 22.46 0.19 -8.82 16 8 C 0.12 6.39 5.56 -21.27 -0.12 6.27 16 9 C -0.48 -24.96 7.80 23.36 0.18 -24.78 16 10 H 0.08 4.21 6.01 -2.91 -0.02 4.19 16 11 C 0.04 2.00 5.17 85.28 0.44 2.44 16 12 N -0.80 -39.36 10.87 21.84 0.24 -39.13 16 13 Si 0.98 36.93 29.59 68.60 2.03 38.96 16 14 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 15 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 16 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 17 C -0.32 -15.89 5.38 -19.67 -0.11 -16.00 16 18 C 0.52 24.12 2.82 71.24 0.20 24.32 16 19 F -0.19 -7.81 15.95 44.97 0.72 -7.09 16 20 F -0.19 -8.85 15.67 44.97 0.70 -8.14 16 21 F -0.19 -9.06 16.48 44.97 0.74 -8.32 16 22 C -0.03 -1.47 9.09 22.26 0.20 -1.27 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.34 8.10 -2.38 -0.02 1.32 16 25 H 0.07 1.37 7.40 -2.39 -0.02 1.35 16 26 H 0.09 2.95 8.05 -2.91 -0.02 2.93 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.08 1.86 6.50 -2.38 -0.02 1.84 16 29 H 0.05 1.46 8.11 -2.38 -0.02 1.44 16 30 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 31 H 0.12 5.93 6.13 -2.91 -0.02 5.91 16 32 H 0.30 12.98 8.29 -92.71 -0.77 12.21 16 33 H 0.12 4.74 7.11 -2.91 -0.02 4.72 16 Total: -1.00 -55.09 293.10 8.13 -46.96 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.14 Total: 17.12 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 2.56 Total: -40.36 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.24 Total: -39.13 kcal Atomic # 9 Polarization: -25.71 SS G_CDS: 2.16 Total: -23.55 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Total: -55.09 8.13 -46.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242759146.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.241 kcal (2) G-P(sol) polarization free energy of solvation -55.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds