Wall clock time and date at job start Mon Mar 30 2020 00:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00039 * 2 1 4 4 H 1.48498 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47156 * 300.00099 * 3 2 1 6 6 H 1.48503 * 109.46947 * 60.00207 * 3 2 1 7 7 C 1.37882 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99633 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.47096 * 179.97438 * 9 7 2 11 11 C 1.38322 * 119.87838 * 90.00350 * 10 9 7 12 12 C 1.38014 * 120.12318 * 180.02562 * 11 10 9 13 13 C 1.39339 * 119.87521 * 359.97438 * 12 11 10 14 14 C 1.48399 * 120.11882 * 180.02562 * 13 12 11 15 15 C 1.39413 * 120.08031 * 359.97438 * 14 13 12 16 16 C 1.38064 * 120.03821 * 179.74237 * 15 14 13 17 17 C 1.38188 * 120.20536 * 0.24117 * 16 15 14 18 18 C 1.39024 * 120.16406 * 0.02562 * 17 16 15 19 19 S 1.76196 * 120.02211 * 180.02562 * 18 17 16 20 20 C 1.38794 * 119.95816 * 0.02562 * 18 17 16 21 21 C 1.39329 * 119.76044 * 0.27536 * 13 12 11 22 22 C 1.38023 * 119.87484 * 359.42825 * 21 13 12 23 23 H 0.96997 * 120.00358 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47563 * 60.00219 * 9 7 2 25 25 H 1.08995 * 109.47546 * 300.00060 * 9 7 2 26 26 H 1.08006 * 119.93576 * 359.97438 * 11 10 9 27 27 H 1.08000 * 120.06415 * 180.02562 * 12 11 10 28 28 H 1.08002 * 119.98460 * 0.02791 * 15 14 13 29 29 H 1.08001 * 119.89987 * 180.25853 * 16 15 14 30 30 H 1.08000 * 119.91921 * 180.02562 * 17 16 15 31 31 H 1.34500 * 103.00184 * 90.00188 * 19 18 17 32 32 H 1.07999 * 120.09914 * 179.97438 * 20 18 17 33 33 H 1.07998 * 120.06296 * 179.70791 * 21 13 12 34 34 H 1.08007 * 119.93786 * 180.29824 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0018 11 6 2.6790 -4.1689 1.1970 12 6 3.5763 -5.2176 1.2017 13 6 4.0298 -5.7484 -0.0041 14 6 4.9941 -6.8764 -0.0053 15 6 5.4495 -7.4077 1.2005 16 6 6.3426 -8.4606 1.1983 17 6 6.7923 -8.9884 0.0030 18 6 6.3480 -8.4615 -1.2044 19 16 6.9233 -9.1377 -2.7263 20 6 5.4510 -7.4023 -1.2102 21 6 3.5786 -5.2130 -1.2087 22 6 2.6766 -4.1684 -1.2017 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.3271 -3.7563 2.1310 27 1 3.9257 -5.6265 2.1383 28 1 5.0999 -6.9985 2.1368 29 1 6.6907 -8.8732 2.1337 30 1 7.4906 -9.8123 0.0067 31 1 6.0220 -10.1008 -2.9894 32 1 5.1048 -6.9909 -2.1468 33 1 3.9305 -5.6176 -2.1461 34 1 2.3224 -3.7557 -2.1349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242864795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:06 Heat of formation + Delta-G solvation = 38.224843 kcal Electronic energy + Delta-G solvation = -16629.277365 eV Core-core repulsion = 14003.429795 eV Total energy + Delta-G solvation = -2625.847571 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.72942 -38.12252 -33.86245 -32.34448 -31.49022 -30.22816 -29.90965 -26.76580 -23.83151 -23.54084 -22.08613 -21.31444 -20.14679 -18.24029 -17.02732 -16.36135 -15.81829 -15.43964 -15.18894 -14.47365 -14.19474 -14.06688 -13.84321 -13.38199 -12.88817 -12.83088 -12.59414 -12.05085 -11.82525 -11.51122 -11.31667 -11.12056 -10.93644 -10.70481 -10.55039 -10.21435 -9.75596 -9.56087 -9.15251 -9.08151 -8.47974 -8.41535 -8.40367 -7.52431 -6.09084 -4.13506 0.67687 0.96883 1.49392 1.95910 2.16010 2.63191 3.26829 3.34690 3.39793 3.62533 4.35526 4.52566 4.62750 4.68248 4.90210 5.11685 5.24280 5.25232 5.31839 5.38109 5.59517 5.76880 5.89574 5.95606 6.08285 6.12495 6.19673 6.37014 6.52088 6.54814 6.73953 7.00062 7.07431 7.08870 7.43144 7.60638 7.76035 7.86537 8.25281 8.92070 9.50861 11.00615 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.032113 B = 0.003413 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.718471 B = 8201.523223 C = 8494.635521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.044 3.956 10 C -0.021 4.021 11 C -0.125 4.125 12 C -0.105 4.105 13 C -0.094 4.094 14 C -0.023 4.023 15 C -0.094 4.094 16 C -0.122 4.122 17 C -0.087 4.087 18 C -0.104 4.104 19 S -0.136 6.136 20 C -0.073 4.073 21 C -0.105 4.105 22 C -0.124 4.124 23 H 0.262 0.738 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.122 0.878 27 H 0.115 0.885 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.028 -17.463 0.174 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.551 4.551 8 H 0.077 0.923 9 C 0.008 3.992 10 C -0.021 4.021 11 C -0.143 4.143 12 C -0.123 4.123 13 C -0.094 4.094 14 C -0.025 4.025 15 C -0.112 4.112 16 C -0.142 4.142 17 C -0.107 4.107 18 C -0.215 4.215 19 S 0.022 5.978 20 C -0.094 4.094 21 C -0.123 4.123 22 C -0.142 4.142 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.140 0.860 27 H 0.133 0.867 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.039 0.961 32 H 0.154 0.846 33 H 0.133 0.867 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.357 -17.561 -0.639 20.923 hybrid contribution -0.641 0.649 0.743 1.177 sum 10.716 -16.912 0.104 20.021 Atomic orbital electron populations 1.69960 1.06056 1.26815 1.50398 1.25016 0.94895 0.99327 0.95081 0.86468 0.80165 0.83367 0.77674 1.19612 1.20885 1.20898 1.21077 0.93111 0.89730 1.51161 0.92341 1.18418 0.92612 0.89655 0.98552 1.20847 0.95091 0.94214 0.91915 1.21050 0.98234 0.96423 0.98583 1.21084 0.97765 0.96957 0.96451 1.18455 0.99713 0.97195 0.94022 1.18919 0.95869 0.95023 0.92651 1.21478 0.96171 0.95533 0.98029 1.21105 0.98134 0.97045 0.97872 1.21525 0.98599 0.99298 0.91297 1.21079 1.03912 1.01467 0.95081 1.86005 1.39858 1.45553 1.26418 1.21692 0.94724 0.94445 0.98504 1.21111 0.97657 0.96951 0.96557 1.21058 0.98147 0.96437 0.98594 0.92827 0.95170 0.95170 0.86041 0.86671 0.85115 0.85330 0.85197 0.96132 0.84607 0.86652 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.12 9.09 -34.44 -0.31 -14.43 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.04 1.12 5.10 -29.04 -0.15 0.97 16 10 C -0.02 -0.43 5.07 -104.56 -0.53 -0.97 16 11 C -0.12 -2.34 9.68 -39.63 -0.38 -2.72 16 12 C -0.10 -1.67 9.43 -39.25 -0.37 -2.04 16 13 C -0.09 -1.47 5.88 -104.90 -0.62 -2.08 16 14 C -0.02 -0.31 5.87 -104.93 -0.62 -0.92 16 15 C -0.09 -1.08 9.43 -39.21 -0.37 -1.45 16 16 C -0.12 -1.19 10.03 -39.66 -0.40 -1.59 16 17 C -0.09 -0.88 9.78 -39.31 -0.38 -1.26 16 18 C -0.10 -1.20 6.11 -39.08 -0.24 -1.44 16 19 S -0.14 -1.42 25.77 -107.50 -2.77 -4.19 16 20 C -0.07 -0.93 9.17 -39.03 -0.36 -1.28 16 21 C -0.10 -1.71 9.43 -39.25 -0.37 -2.08 16 22 C -0.12 -2.35 9.68 -39.63 -0.38 -2.73 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 25 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 26 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 27 H 0.12 1.49 6.20 -52.49 -0.33 1.16 16 28 H 0.13 1.30 6.20 -52.49 -0.33 0.98 16 29 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.07 0.71 9.07 97.61 0.89 1.59 16 32 H 0.14 1.62 6.20 -52.49 -0.33 1.29 16 33 H 0.12 1.58 6.21 -52.49 -0.33 1.25 16 34 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 307.45 15.07 4.63 4.63 Total: -1.00 -29.30 307.45 -10.49 -39.79 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -2.49 Total: 1.28 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: -5.58 Total: -32.49 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.74 Total: -25.29 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.77 Total: -4.19 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.30 -10.49 -39.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242864795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.010 kcal (2) G-P(sol) polarization free energy of solvation -29.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds