Wall clock time and date at job start Mon Mar 30 2020 00:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00039 * 2 1 4 4 H 1.48498 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47156 * 300.00099 * 3 2 1 6 6 H 1.48503 * 109.46947 * 60.00207 * 3 2 1 7 7 C 1.37882 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99633 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.47096 * 179.97438 * 9 7 2 11 11 C 1.38322 * 119.87838 * 90.00350 * 10 9 7 12 12 C 1.38014 * 120.12318 * 180.02562 * 11 10 9 13 13 C 1.39339 * 119.87521 * 359.97438 * 12 11 10 14 14 C 1.48399 * 120.11882 * 180.02562 * 13 12 11 15 15 C 1.39413 * 120.08031 * 359.97438 * 14 13 12 16 16 C 1.38064 * 120.03821 * 179.74237 * 15 14 13 17 17 C 1.38188 * 120.20536 * 0.24117 * 16 15 14 18 18 C 1.39024 * 120.16406 * 0.02562 * 17 16 15 19 19 S 1.76196 * 120.02211 * 180.02562 * 18 17 16 20 20 C 1.38794 * 119.95816 * 0.02562 * 18 17 16 21 21 C 1.39329 * 119.76044 * 0.27536 * 13 12 11 22 22 C 1.38023 * 119.87484 * 359.42825 * 21 13 12 23 23 H 0.96997 * 120.00358 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47563 * 60.00219 * 9 7 2 25 25 H 1.08995 * 109.47546 * 300.00060 * 9 7 2 26 26 H 1.08006 * 119.93576 * 359.97438 * 11 10 9 27 27 H 1.08000 * 120.06415 * 180.02562 * 12 11 10 28 28 H 1.08002 * 119.98460 * 0.02791 * 15 14 13 29 29 H 1.08001 * 119.89987 * 180.25853 * 16 15 14 30 30 H 1.08000 * 119.91921 * 180.02562 * 17 16 15 31 31 H 1.34500 * 103.00184 * 90.00188 * 19 18 17 32 32 H 1.07999 * 120.09914 * 179.97438 * 20 18 17 33 33 H 1.07998 * 120.06296 * 179.70791 * 21 13 12 34 34 H 1.08007 * 119.93786 * 180.29824 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0018 11 6 2.6790 -4.1689 1.1970 12 6 3.5763 -5.2176 1.2017 13 6 4.0298 -5.7484 -0.0041 14 6 4.9941 -6.8764 -0.0053 15 6 5.4495 -7.4077 1.2005 16 6 6.3426 -8.4606 1.1983 17 6 6.7923 -8.9884 0.0030 18 6 6.3480 -8.4615 -1.2044 19 16 6.9233 -9.1377 -2.7263 20 6 5.4510 -7.4023 -1.2102 21 6 3.5786 -5.2130 -1.2087 22 6 2.6766 -4.1684 -1.2017 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.3271 -3.7563 2.1310 27 1 3.9257 -5.6265 2.1383 28 1 5.0999 -6.9985 2.1368 29 1 6.6907 -8.8732 2.1337 30 1 7.4906 -9.8123 0.0067 31 1 6.0220 -10.1008 -2.9894 32 1 5.1048 -6.9909 -2.1468 33 1 3.9305 -5.6176 -2.1461 34 1 2.3224 -3.7557 -2.1349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242864795.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:06 Heat of formation + Delta-G solvation = 24.915167 kcal Electronic energy + Delta-G solvation = -16629.854516 eV Core-core repulsion = 14003.429795 eV Total energy + Delta-G solvation = -2626.424721 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81799 -39.30821 -35.62426 -33.93290 -32.47681 -31.44476 -31.34999 -28.40394 -25.48345 -24.57939 -23.40883 -22.49448 -21.49867 -19.15754 -18.53484 -17.92063 -16.84658 -16.75750 -16.51823 -15.95343 -15.36607 -15.29194 -14.82005 -14.61490 -14.37545 -14.13723 -14.02880 -13.45077 -13.28388 -13.04033 -12.72856 -12.57548 -12.45591 -12.20608 -11.88433 -11.58466 -11.46202 -11.38982 -10.62579 -10.41332 -9.91888 -9.78923 -9.20426 -8.84748 -8.20785 -6.35447 -0.28141 0.05376 0.57442 0.67668 0.98262 1.38994 1.39823 1.53270 1.82413 2.38507 2.66677 3.08921 3.15466 3.59998 3.81085 3.98706 4.13819 4.23397 4.28831 4.36762 4.39226 4.59017 4.67349 4.78276 4.90237 5.08490 5.14279 5.24315 5.31481 5.34221 5.38382 5.40984 5.58835 5.73096 5.75886 5.88092 6.05135 6.08744 6.22421 6.77479 7.33426 8.87515 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.032113 B = 0.003413 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.718471 B = 8201.523223 C = 8494.635521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.054 3.946 10 C -0.059 4.059 11 C -0.134 4.134 12 C -0.101 4.101 13 C -0.079 4.079 14 C -0.050 4.050 15 C -0.093 4.093 16 C -0.117 4.117 17 C -0.078 4.078 18 C -0.117 4.117 19 S -0.137 6.137 20 C -0.081 4.081 21 C -0.107 4.107 22 C -0.135 4.135 23 H 0.266 0.734 24 H 0.003 0.997 25 H 0.005 0.995 26 H 0.120 0.880 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.163 0.837 30 H 0.154 0.846 31 H 0.083 0.917 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.764 -19.240 0.962 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.072 0.928 9 C 0.018 3.982 10 C -0.059 4.059 11 C -0.152 4.152 12 C -0.118 4.118 13 C -0.079 4.079 14 C -0.052 4.052 15 C -0.111 4.111 16 C -0.136 4.136 17 C -0.099 4.099 18 C -0.229 4.229 19 S 0.020 5.980 20 C -0.101 4.101 21 C -0.124 4.124 22 C -0.153 4.153 23 H 0.075 0.925 24 H 0.021 0.979 25 H 0.024 0.976 26 H 0.138 0.862 27 H 0.169 0.831 28 H 0.164 0.836 29 H 0.180 0.820 30 H 0.172 0.828 31 H 0.047 0.953 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.097 -19.350 0.147 23.940 hybrid contribution -1.389 0.982 0.487 1.769 sum 12.708 -18.367 0.633 22.344 Atomic orbital electron populations 1.70080 1.07658 1.27942 1.51287 1.25929 0.95776 1.03126 0.94540 0.85381 0.78894 0.78688 0.78008 1.18983 1.20164 1.20037 1.21393 0.93069 0.91195 1.50975 0.92778 1.18135 0.92946 0.91225 0.95940 1.20525 0.96603 0.94759 0.93988 1.21087 0.99087 0.97455 0.97536 1.21367 0.96508 0.95695 0.98252 1.18778 0.98713 0.96926 0.93469 1.18845 0.96904 0.95393 0.94014 1.21741 0.95955 0.95643 0.97780 1.21479 0.96963 0.96023 0.99157 1.21918 0.97898 0.99204 0.90847 1.21241 1.04035 1.01517 0.96127 1.86022 1.39890 1.45783 1.26331 1.21761 0.95120 0.94925 0.98338 1.21335 0.96773 0.95995 0.98312 1.21052 0.99119 0.97520 0.97603 0.92521 0.97866 0.97643 0.86245 0.83121 0.83577 0.81977 0.82830 0.95261 0.84709 0.84161 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.97 44.35 29.54 68.60 2.03 46.37 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.53 -30.32 9.09 25.60 0.23 -30.08 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.05 2.93 5.10 29.10 0.15 3.08 16 10 C -0.06 -2.60 5.07 -19.82 -0.10 -2.70 16 11 C -0.13 -5.09 9.68 22.24 0.22 -4.87 16 12 C -0.10 -3.06 9.43 22.48 0.21 -2.85 16 13 C -0.08 -2.34 5.88 -20.04 -0.12 -2.46 16 14 C -0.05 -1.21 5.87 -20.06 -0.12 -1.33 16 15 C -0.09 -1.78 9.43 22.51 0.21 -1.57 16 16 C -0.12 -1.74 10.03 22.22 0.22 -1.52 16 17 C -0.08 -1.27 9.78 22.45 0.22 -1.05 16 18 C -0.12 -2.38 6.11 22.59 0.14 -2.24 16 19 S -0.14 -2.56 25.77 -56.49 -1.46 -4.01 16 20 C -0.08 -1.87 9.17 22.63 0.21 -1.66 16 21 C -0.11 -3.42 9.43 22.48 0.21 -3.21 16 22 C -0.13 -5.29 9.68 22.24 0.22 -5.07 16 23 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 24 H 0.00 0.17 8.08 -2.38 -0.02 0.15 16 25 H 0.01 0.30 8.08 -2.39 -0.02 0.28 16 26 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 27 H 0.15 3.42 6.20 -2.91 -0.02 3.40 16 28 H 0.15 2.27 6.20 -2.91 -0.02 2.25 16 29 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 30 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.08 1.39 9.07 73.35 0.67 2.06 16 32 H 0.14 3.01 6.20 -2.91 -0.02 2.99 16 33 H 0.14 3.70 6.21 -2.91 -0.02 3.68 16 34 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -65.41 307.45 5.01 -60.40 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.79 Total: 9.81 kcal Atomic # 6 Polarization: -59.19 SS G_CDS: 2.36 Total: -56.83 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.28 Total: -55.75 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -1.46 Total: -4.01 kcal Total: -65.41 5.01 -60.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242864795.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.319 kcal (2) G-P(sol) polarization free energy of solvation -65.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds