Wall clock time and date at job start Mon Mar 30 2020 01:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76200 * 103.00388 * 2 1 4 4 C 1.38911 * 120.17072 * 359.97438 * 3 2 1 5 5 C 1.38037 * 120.05764 * 180.02562 * 4 3 2 6 6 C 1.38604 * 120.41070 * 0.02562 * 5 4 3 7 7 C 1.37842 * 120.34521 * 359.71113 * 6 5 4 8 8 C 1.39625 * 119.93173 * 0.56170 * 7 6 5 9 9 C 1.47734 * 120.20038 * 179.71762 * 8 7 6 10 10 C 1.40071 * 119.89217 * 309.72145 * 9 8 7 11 11 C 1.36179 * 120.11064 * 179.97438 * 10 9 8 12 12 C 1.40977 * 119.88747 * 0.28146 * 11 10 9 13 13 C 1.40960 * 120.10636 * 179.70257 * 12 11 10 14 14 H 1.08000 * 119.99899 * 204.72998 * 13 12 11 15 15 C 1.39944 * 120.00137 * 24.72605 * 13 12 11 16 16 N 1.30834 * 120.00186 * 17.99214 * 15 13 12 17 17 Si 1.86800 * 120.00296 * 197.98626 * 15 13 12 18 18 H 1.48504 * 109.46867 * 59.99896 * 17 15 13 19 19 H 1.48501 * 109.47622 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46985 * 300.00366 * 17 15 13 21 21 C 1.40972 * 119.78271 * 359.44473 * 12 11 10 22 22 C 1.36178 * 119.89215 * 0.55358 * 21 12 11 23 23 H 1.08997 * 109.46709 * 299.99975 * 1 2 3 24 24 H 1.08997 * 109.47042 * 59.99325 * 1 2 3 25 25 H 1.08997 * 109.47099 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.96937 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.79632 * 179.97438 * 5 4 3 28 28 H 1.08004 * 119.83027 * 179.97438 * 6 5 4 29 29 H 1.07995 * 120.03478 * 180.29868 * 7 6 5 30 30 H 1.07994 * 119.94649 * 0.02562 * 10 9 8 31 31 H 1.07996 * 120.05567 * 180.02562 * 11 10 9 32 32 H 0.97004 * 120.00584 * 180.02562 * 16 15 13 33 33 H 1.08006 * 120.05718 * 180.25532 * 21 12 11 34 34 H 1.08000 * 119.94844 * 179.74048 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1975 2.6673 -0.0005 5 6 1.5107 4.0116 -0.0011 6 6 2.8341 4.4237 -0.0016 7 6 3.8526 3.4949 0.0044 8 6 3.5522 2.1314 -0.0008 9 6 4.6391 1.1309 -0.0008 10 6 5.6811 1.2320 -0.9314 11 6 6.6856 0.3126 -0.9349 12 6 6.6724 -0.7458 -0.0038 13 6 7.7066 -1.7037 -0.0074 14 1 7.5283 -2.6923 0.3891 15 6 8.9642 -1.3737 -0.5250 16 7 9.3002 -0.1184 -0.6770 17 14 10.1634 -2.7254 -0.9985 18 1 9.5558 -3.5801 -2.0500 19 1 11.4154 -2.1175 -1.5164 20 1 10.4725 -3.5534 0.1949 21 6 5.6246 -0.8400 0.9346 22 6 4.6246 0.0844 0.9302 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 0.1638 2.3541 -0.0005 27 1 0.7197 4.7470 -0.0019 28 1 3.0685 5.4779 -0.0024 29 1 4.8820 3.8215 0.0088 30 1 5.6884 2.0411 -1.6467 31 1 7.4887 0.3917 -1.6526 32 1 10.1718 0.1104 -1.0361 33 1 5.6123 -1.6466 1.6526 34 1 3.8192 0.0108 1.6460 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242943691.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:43 Heat of formation + Delta-G solvation = 21.649905 kcal Electronic energy + Delta-G solvation = -17172.201099 eV Core-core repulsion = 14545.634785 eV Total energy + Delta-G solvation = -2626.566314 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.077 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.26720 -38.88638 -35.72978 -33.12548 -32.18365 -31.39339 -30.31037 -29.55612 -26.95747 -23.89487 -23.64449 -22.44814 -21.62565 -19.28471 -18.55440 -17.36104 -17.03682 -16.15877 -15.88409 -15.69941 -15.21576 -15.00296 -14.80910 -14.56011 -14.33863 -13.92987 -13.72301 -13.48268 -13.26590 -13.11309 -12.81416 -12.64479 -12.39364 -12.16192 -11.93499 -11.62270 -11.31081 -11.10412 -10.82463 -10.57694 -9.91574 -9.44398 -9.07599 -8.68453 -8.19137 -6.33376 0.22527 0.41607 0.72103 1.04693 1.21370 1.37909 1.49511 1.55573 1.74420 2.19141 2.65500 2.90728 3.72396 4.02225 4.04968 4.24009 4.31368 4.33289 4.42943 4.50707 4.56494 4.59352 4.86512 4.90029 5.00000 5.09611 5.14899 5.27847 5.38579 5.41128 5.56902 5.65170 5.71793 5.94195 6.08161 6.14168 6.22110 6.34037 6.64903 6.88770 7.00632 8.27411 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028903 B = 0.004870 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.513806 B = 5748.555406 C = 6505.229440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.152 6.152 3 C -0.104 4.104 4 C -0.133 4.133 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.124 4.124 8 C -0.008 4.008 9 C -0.194 4.194 10 C -0.081 4.081 11 C -0.192 4.192 12 C 0.089 3.911 13 C -0.492 4.492 14 H 0.079 0.921 15 C 0.036 3.964 16 N -0.817 5.817 17 Si 0.984 3.016 18 H -0.260 1.260 19 H -0.265 1.265 20 H -0.258 1.258 21 C -0.243 4.243 22 C -0.055 4.055 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.118 0.882 26 H 0.145 0.855 27 H 0.157 0.843 28 H 0.150 0.850 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.291 0.709 33 H 0.097 0.903 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.204 5.244 -0.113 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.091 5.909 3 C -0.216 4.216 4 C -0.156 4.156 5 C -0.136 4.136 6 C -0.139 4.139 7 C -0.144 4.144 8 C -0.013 4.013 9 C -0.196 4.196 10 C -0.099 4.099 11 C -0.211 4.211 12 C 0.087 3.913 13 C -0.521 4.521 14 H 0.097 0.903 15 C -0.180 4.180 16 N -0.442 5.442 17 Si 0.804 3.196 18 H -0.185 1.185 19 H -0.189 1.189 20 H -0.182 1.182 21 C -0.263 4.263 22 C -0.074 4.074 23 H 0.112 0.888 24 H 0.109 0.891 25 H 0.137 0.863 26 H 0.163 0.837 27 H 0.175 0.825 28 H 0.167 0.833 29 H 0.136 0.864 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.393 4.324 -0.176 13.127 hybrid contribution 0.202 0.485 -0.160 0.549 sum -12.191 4.809 -0.336 13.109 Atomic orbital electron populations 1.23807 0.93481 1.07947 1.06169 1.86385 1.07816 1.04141 1.92515 1.22066 0.95863 0.96773 1.06940 1.21376 0.98266 0.93309 1.02692 1.21378 0.97004 0.95303 0.99889 1.21388 0.92521 1.00158 0.99848 1.21395 1.00088 0.91698 1.01221 1.18678 0.90738 0.93389 0.98522 1.18290 0.98055 0.99823 1.03422 1.20617 0.93723 0.97894 0.97693 1.20910 0.99561 0.98982 1.01681 1.18012 0.91957 0.92121 0.89250 1.19830 0.95929 0.99546 1.36758 0.90336 1.26824 1.00549 0.98541 0.92077 1.69877 1.22094 1.20213 1.32022 0.85223 0.76524 0.78091 0.79726 1.18468 1.18947 1.18182 1.20807 0.99855 1.02925 1.02708 1.20452 0.96435 0.93379 0.97111 0.88839 0.89097 0.86314 0.83727 0.82542 0.83276 0.86427 0.88118 0.87931 0.89840 0.88448 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.15 113.37 1.04 -1.88 16 2 S -0.15 -5.01 19.35 -56.49 -1.09 -6.11 16 3 C -0.10 -3.56 6.10 22.96 0.14 -3.42 16 4 C -0.13 -3.49 9.36 22.38 0.21 -3.28 16 5 C -0.12 -2.68 10.03 22.31 0.22 -2.46 16 6 C -0.12 -3.08 10.03 22.26 0.22 -2.86 16 7 C -0.12 -4.23 9.51 22.51 0.21 -4.01 16 8 C -0.01 -0.32 5.48 -19.90 -0.11 -0.43 16 9 C -0.19 -9.04 5.10 -19.88 -0.10 -9.15 16 10 C -0.08 -4.00 9.44 22.24 0.21 -3.79 16 11 C -0.19 -10.52 8.63 22.46 0.19 -10.32 16 12 C 0.09 4.99 5.57 -21.27 -0.12 4.88 16 13 C -0.49 -27.05 9.02 23.35 0.21 -26.84 16 14 H 0.08 4.14 7.91 -2.91 -0.02 4.12 16 15 C 0.04 1.84 5.13 85.25 0.44 2.28 16 16 N -0.82 -43.04 10.96 21.83 0.24 -42.80 16 17 Si 0.98 38.22 29.60 68.60 2.03 40.25 16 18 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 19 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 21 C -0.24 -12.65 9.73 22.46 0.22 -12.43 16 22 C -0.05 -2.61 8.01 22.23 0.18 -2.43 16 23 H 0.09 1.59 7.75 -2.39 -0.02 1.57 16 24 H 0.09 1.58 7.75 -2.39 -0.02 1.56 16 25 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.15 2.89 5.89 -2.91 -0.02 2.87 16 27 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 28 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 29 H 0.12 4.03 8.04 -2.91 -0.02 4.00 16 30 H 0.10 4.56 8.04 -2.91 -0.02 4.54 16 31 H 0.10 5.81 6.16 -2.91 -0.02 5.79 16 32 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 33 H 0.10 4.80 8.06 -2.91 -0.02 4.77 16 34 H 0.11 4.82 7.04 -2.91 -0.02 4.80 16 Total: -1.00 -63.21 300.71 5.44 -57.77 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 1.10 Total: 27.03 kcal Atomic # 6 Polarization: -79.32 SS G_CDS: 3.17 Total: -76.15 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.24 Total: -42.80 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Atomic # 16 Polarization: -5.01 SS G_CDS: -1.09 Total: -6.11 kcal Total: -63.21 5.44 -57.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242943691.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.419 kcal (2) G-P(sol) polarization free energy of solvation -63.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds