Wall clock time and date at job start Mon Mar 30 2020 01:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.39848 * 125.43845 * 2 1 4 4 C 1.30220 * 110.11427 * 180.02562 * 3 2 1 5 5 C 1.46007 * 107.74680 * 0.02562 * 4 3 2 6 6 C 1.39748 * 133.89815 * 180.30710 * 5 4 3 7 7 C 1.38572 * 119.43334 * 180.13996 * 6 5 4 8 8 C 1.48411 * 119.89056 * 179.79275 * 7 6 5 9 9 N 1.31291 * 126.20508 * 359.69058 * 8 7 6 10 10 O 1.21270 * 110.52903 * 180.02562 * 9 8 7 11 11 C 1.34748 * 109.76137 * 0.02562 * 10 9 8 12 12 C 1.40359 * 126.67633 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99790 * 174.31962 * 12 11 10 14 14 C 1.40430 * 120.00286 * 354.31991 * 12 11 10 15 15 N 1.30519 * 120.00220 * 6.00751 * 14 12 11 16 16 Si 1.86800 * 119.99823 * 186.00575 * 14 12 11 17 17 H 1.48505 * 109.47034 * 94.98267 * 16 14 12 18 18 H 1.48503 * 109.46986 * 214.97982 * 16 14 12 19 19 H 1.48500 * 109.47507 * 334.98383 * 16 14 12 20 20 N 1.33192 * 106.64080 * 359.97438 * 11 10 9 21 21 C 1.40033 * 120.22328 * 359.51251 * 7 6 5 22 22 C 1.36308 * 120.70250 * 0.25471 * 21 7 6 23 23 C 1.36997 * 125.43699 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.47158 * 269.97659 * 1 2 3 25 25 H 1.09004 * 109.47121 * 29.97577 * 1 2 3 26 26 H 1.08997 * 109.47172 * 149.97479 * 1 2 3 27 27 H 1.07989 * 126.12866 * 179.97438 * 4 3 2 28 28 H 1.08001 * 120.27864 * 359.90100 * 6 5 4 29 29 H 0.96996 * 120.00493 * 180.02562 * 15 14 12 30 30 H 1.08004 * 119.64930 * 180.28134 * 21 7 6 31 31 H 1.08003 * 119.92626 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2758 1.1394 0.0000 4 6 3.5317 0.7952 -0.0005 5 6 3.5934 -0.6635 -0.0016 6 6 4.6405 -1.5891 0.0029 7 6 4.3514 -2.9443 -0.0027 8 6 5.4555 -3.9360 -0.0027 9 7 6.7403 -3.6662 -0.0034 10 8 7.3900 -4.6902 -0.0036 11 6 6.5632 -5.7542 -0.0037 12 6 6.9378 -7.1069 -0.0045 13 1 6.1849 -7.8758 0.0882 14 6 8.2914 -7.4607 -0.1256 15 7 9.2111 -6.5346 -0.1195 16 14 8.7757 -9.2568 -0.2955 17 1 8.9244 -9.5955 -1.7338 18 1 10.0648 -9.4901 0.4038 19 1 7.7230 -10.1127 0.3082 20 7 5.3215 -5.2724 -0.0029 21 6 3.0210 -3.3812 -0.0026 22 6 1.9941 -2.4849 -0.0021 23 6 2.2593 -1.1162 -0.0005 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 4.3763 1.4682 -0.0011 28 1 5.6662 -1.2509 0.0069 29 1 10.1460 -6.7788 -0.2036 30 1 2.8063 -4.4397 -0.0024 31 1 0.9726 -2.8358 -0.0024 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247385101.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:06 Heat of formation + Delta-G solvation = 116.178693 kcal Electronic energy + Delta-G solvation = -18954.105191 eV Core-core repulsion = 15817.637490 eV Total energy + Delta-G solvation = -3136.467701 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.99520 -42.25141 -38.49715 -36.06961 -35.41959 -34.51226 -32.80884 -31.25106 -30.65224 -28.49868 -27.51216 -24.82636 -24.23451 -23.01549 -22.16815 -21.70396 -19.82918 -18.16471 -17.87234 -17.80771 -17.30072 -16.49819 -16.48145 -16.14395 -15.39676 -14.97882 -14.91559 -14.51199 -14.04641 -13.81571 -13.56255 -13.43462 -13.11483 -13.06581 -13.03303 -12.31519 -12.13106 -11.96053 -11.94574 -11.86017 -11.56934 -11.01933 -10.99933 -10.41401 -9.69257 -8.94719 -8.76562 -7.08593 -0.13237 0.06950 1.05196 1.42271 1.42828 1.46204 1.62201 1.63535 2.04568 2.16931 2.81979 3.05687 3.11202 3.37475 3.43632 3.58060 3.74238 3.99970 4.25324 4.31342 4.42930 4.45892 4.63268 4.67357 4.73096 4.92475 4.95633 5.09784 5.37702 5.45606 5.60267 5.67376 5.88753 6.02380 6.07443 6.29362 6.45536 6.54058 8.07385 8.27588 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.054851 B = 0.003700 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.348226 B = 7565.393278 C = 8056.604120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.412 5.412 3 N -0.272 5.272 4 C 0.085 3.915 5 C -0.200 4.200 6 C -0.011 4.011 7 C -0.063 4.063 8 C 0.206 3.794 9 N -0.487 5.487 10 O 0.016 5.984 11 C 0.272 3.728 12 C -0.433 4.433 13 H 0.124 0.876 14 C 0.029 3.971 15 N -0.795 5.795 16 Si 1.023 2.977 17 H -0.256 1.256 18 H -0.259 1.259 19 H -0.246 1.246 20 N -0.628 5.628 21 C -0.039 4.039 22 C -0.130 4.130 23 C 0.127 3.873 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.230 0.770 28 H 0.128 0.872 29 H 0.306 0.694 30 H 0.136 0.864 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.633 6.455 -0.298 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.200 5.200 3 N -0.084 5.084 4 C -0.112 4.112 5 C -0.208 4.208 6 C -0.034 4.034 7 C -0.066 4.066 8 C -0.066 4.066 9 N -0.221 5.221 10 O -0.027 6.027 11 C 0.083 3.917 12 C -0.470 4.470 13 H 0.142 0.858 14 C -0.193 4.193 15 N -0.422 5.422 16 Si 0.839 3.161 17 H -0.180 1.180 18 H -0.183 1.183 19 H -0.169 1.169 20 N -0.373 5.373 21 C -0.061 4.061 22 C -0.151 4.151 23 C 0.011 3.989 24 H 0.101 0.899 25 H 0.117 0.883 26 H 0.123 0.877 27 H 0.246 0.754 28 H 0.146 0.854 29 H 0.118 0.882 30 H 0.154 0.846 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.536 8.223 -0.293 14.995 hybrid contribution 1.312 -1.345 -0.021 1.879 sum -11.224 6.878 -0.314 13.167 Atomic orbital electron populations 1.22128 0.71658 1.05830 1.04383 1.48497 1.07172 1.00216 1.64162 1.76506 1.02989 1.09519 1.19356 1.25592 0.95399 0.92238 0.97949 1.19956 0.92697 0.94408 1.13766 1.20548 0.98729 0.90242 0.93868 1.17418 0.90430 0.90117 1.08685 1.23926 0.91378 0.91179 1.00071 1.74493 1.05956 1.09533 1.32150 1.85445 1.34266 1.10518 1.72508 1.24799 0.82330 0.92930 0.91630 1.19153 0.95319 0.86912 1.45608 0.85821 1.27397 0.94574 1.06992 0.90380 1.69701 1.03933 1.38813 1.29755 0.84589 0.79049 0.72476 0.79985 1.18023 1.18296 1.16934 1.72316 1.21334 1.05571 1.38062 1.20772 0.90061 1.00703 0.94578 1.19874 1.00705 0.87649 1.06897 1.19074 0.90843 0.90246 0.98786 0.89927 0.88337 0.87712 0.75429 0.85371 0.88250 0.84579 0.81640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.39 11.39 127.77 1.46 2.85 16 2 N -0.41 -10.09 4.05 -360.90 -1.46 -11.55 16 3 N -0.27 -7.12 12.40 -53.05 -0.66 -7.78 16 4 C 0.09 2.16 12.29 86.95 1.07 3.23 16 5 C -0.20 -6.31 6.35 -20.25 -0.13 -6.44 16 6 C -0.01 -0.41 9.74 22.71 0.22 -0.19 16 7 C -0.06 -2.70 5.87 -20.05 -0.12 -2.82 16 8 C 0.21 11.00 7.77 137.43 1.07 12.07 16 9 N -0.49 -28.00 11.81 -56.02 -0.66 -28.66 16 10 O 0.02 0.97 9.74 64.28 0.63 1.60 16 11 C 0.27 16.00 7.80 85.06 0.66 16.67 16 12 C -0.43 -23.02 9.47 23.32 0.22 -22.80 16 13 H 0.12 6.11 7.86 -2.91 -0.02 6.08 16 14 C 0.03 1.36 5.50 85.42 0.47 1.83 16 15 N -0.80 -40.55 12.08 21.91 0.26 -40.29 16 16 Si 1.02 34.35 29.57 68.60 2.03 36.38 16 17 H -0.26 -8.24 7.11 99.48 0.71 -7.54 16 18 H -0.26 -8.12 7.11 99.48 0.71 -7.41 16 19 H -0.25 -7.86 7.11 99.48 0.71 -7.15 16 20 N -0.63 -35.59 11.27 -305.04 -3.44 -39.02 16 21 C -0.04 -1.39 9.61 22.26 0.21 -1.18 16 22 C -0.13 -3.57 9.92 22.10 0.22 -3.35 16 23 C 0.13 3.65 6.87 39.27 0.27 3.92 16 24 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.10 1.04 8.12 -2.39 -0.02 1.02 16 27 H 0.23 3.91 8.06 -2.92 -0.02 3.88 16 28 H 0.13 4.86 7.84 -2.91 -0.02 4.83 16 29 H 0.31 13.57 8.29 -92.71 -0.77 12.80 16 30 H 0.14 4.92 7.84 -2.91 -0.02 4.89 16 31 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -72.48 287.15 3.50 -68.97 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 1.18 Total: 16.55 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 5.62 Total: 3.80 kcal Atomic # 7 Polarization: -121.35 SS G_CDS: -5.95 Total: -127.30 kcal Atomic # 8 Polarization: 0.97 SS G_CDS: 0.63 Total: 1.60 kcal Atomic # 14 Polarization: 34.35 SS G_CDS: 2.03 Total: 36.38 kcal Total: -72.48 3.50 -68.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247385101.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.151 kcal (2) G-P(sol) polarization free energy of solvation -72.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds