Wall clock time and date at job start Mon Mar 30 2020 01:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99829 * 2 1 4 4 N 1.32304 * 119.67731 * 359.97438 * 3 2 1 5 5 C 1.31960 * 121.68083 * 180.02562 * 4 3 2 6 6 C 1.38036 * 120.84508 * 359.97438 * 5 4 3 7 7 C 1.38926 * 119.27213 * 0.02562 * 6 5 4 8 8 Cl 1.73600 * 120.77351 * 179.97438 * 7 6 5 9 9 C 1.38575 * 118.45814 * 0.02562 * 7 6 5 10 10 C 1.50703 * 120.44986 * 179.72679 * 9 7 6 11 11 N 1.46900 * 109.47039 * 90.00126 * 10 9 7 12 12 C 1.46906 * 110.99928 * 293.95046 * 11 10 9 13 13 C 1.46895 * 110.99970 * 170.00141 * 11 10 9 14 14 C 1.50703 * 109.47157 * 189.99735 * 13 11 10 15 15 H 1.08003 * 119.99973 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99978 * 179.97438 * 14 13 11 17 17 N 1.31519 * 119.99996 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 120.00146 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46742 * 90.00079 * 18 16 14 20 20 H 1.48492 * 109.47138 * 210.00411 * 18 16 14 21 21 H 1.48503 * 109.46918 * 330.00321 * 18 16 14 22 22 H 1.09006 * 109.47109 * 60.00634 * 1 2 3 23 23 H 1.09003 * 109.46717 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47379 * 300.00334 * 1 2 3 25 25 H 1.07997 * 119.57540 * 180.02562 * 5 4 3 26 26 H 1.08001 * 120.36142 * 179.97438 * 6 5 4 27 27 H 1.08997 * 109.46805 * 209.99712 * 10 9 7 28 28 H 1.08996 * 109.47235 * 329.99987 * 10 9 7 29 29 H 1.09001 * 109.46868 * 59.99991 * 12 11 10 30 30 H 1.08994 * 109.47310 * 180.02562 * 12 11 10 31 31 H 1.08999 * 109.47305 * 300.00570 * 12 11 10 32 32 H 1.08999 * 109.46955 * 309.99659 * 13 11 10 33 33 H 1.08999 * 109.47605 * 69.99392 * 13 11 10 34 34 H 0.96998 * 119.99624 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3181 2.3144 -0.0005 5 6 1.8757 3.5104 -0.0010 6 6 3.2489 3.6511 -0.0005 7 6 4.0481 2.5148 0.0000 8 17 5.7791 2.6464 0.0000 9 6 3.4316 1.2737 -0.0006 10 6 4.2552 0.0117 -0.0062 11 7 4.5277 -0.4014 1.3769 12 6 5.3887 0.5748 2.0580 13 6 5.1203 -1.7448 1.4180 14 6 5.1588 -2.2335 2.8431 15 1 4.7805 -1.6087 3.6387 16 6 5.6761 -3.4787 3.1312 17 7 5.7092 -3.9053 4.3748 18 14 6.3285 -4.5603 1.7550 19 1 7.7726 -4.2821 1.5491 20 1 6.1465 -5.9884 2.1192 21 1 5.5850 -4.2702 0.5026 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.2496 4.3904 -0.0010 26 1 3.6969 4.6338 -0.0014 27 1 3.7067 -0.7778 -0.5198 28 1 5.1973 0.1950 -0.5229 29 1 4.8944 1.5462 2.0742 30 1 5.5750 0.2444 3.0798 31 1 6.3359 0.6581 1.5250 32 1 4.5184 -2.4260 0.8165 33 1 6.1340 -1.7073 1.0193 34 1 6.0728 -4.7815 4.5774 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248791616.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:46 Heat of formation + Delta-G solvation = -16.152487 kcal Electronic energy + Delta-G solvation = -18732.656562 eV Core-core repulsion = 15691.558044 eV Total energy + Delta-G solvation = -3041.098518 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.83172 -39.10859 -38.38719 -37.61619 -34.84870 -33.48844 -32.13081 -29.88922 -28.35630 -28.13912 -25.77986 -24.01489 -23.30931 -21.85862 -19.46159 -19.00389 -18.42034 -17.22289 -16.89266 -16.50419 -16.25122 -15.92479 -15.66655 -15.25945 -14.90906 -14.63668 -14.41924 -14.15049 -13.68050 -13.44809 -13.22164 -12.96871 -12.72974 -12.64643 -12.42507 -12.09747 -11.99078 -11.95934 -11.73998 -11.49617 -10.80822 -10.77608 -10.48937 -9.53106 -9.01147 -8.27768 -6.31009 -0.09305 0.08618 0.81559 1.34426 1.36607 1.47802 2.20440 2.34947 2.57793 3.05116 3.25329 3.36641 3.72544 3.77498 3.95554 4.31636 4.35950 4.44718 4.46466 4.50202 4.60935 4.72188 4.73876 4.80283 4.86595 4.95936 5.02418 5.15485 5.27075 5.52503 5.95239 6.23283 6.31344 6.61351 6.74094 6.74764 7.32110 8.88939 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.020332 B = 0.006139 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.830461 B = 4559.897002 C = 5420.883690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.315 6.315 3 C 0.336 3.664 4 N -0.548 5.548 5 C 0.154 3.846 6 C -0.196 4.196 7 C 0.033 3.967 8 Cl -0.041 7.041 9 C -0.157 4.157 10 C 0.104 3.896 11 N -0.538 5.538 12 C 0.047 3.953 13 C 0.174 3.826 14 C -0.514 4.514 15 H 0.036 0.964 16 C 0.009 3.991 17 N -0.948 5.948 18 Si 0.946 3.054 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.249 1.249 22 H 0.068 0.932 23 H 0.113 0.887 24 H 0.056 0.944 25 H 0.211 0.789 26 H 0.180 0.820 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.027 0.973 32 H 0.030 0.970 33 H -0.011 1.011 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 16.356 -13.823 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.221 6.221 3 C 0.157 3.843 4 N -0.272 5.272 5 C -0.002 4.002 6 C -0.216 4.216 7 C -0.002 4.002 8 Cl -0.012 7.012 9 C -0.162 4.162 10 C -0.024 4.024 11 N -0.262 5.262 12 C -0.101 4.101 13 C 0.047 3.953 14 C -0.552 4.552 15 H 0.054 0.946 16 C -0.188 4.188 17 N -0.589 5.589 18 Si 0.769 3.231 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.173 1.173 22 H 0.087 0.913 23 H 0.131 0.869 24 H 0.075 0.925 25 H 0.228 0.772 26 H 0.197 0.803 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.007 0.993 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.886 15.816 -13.468 22.219 hybrid contribution 1.942 -0.685 -0.284 2.079 sum -5.943 15.131 -13.752 21.292 Atomic orbital electron populations 1.23070 0.75633 1.04428 1.02498 1.86326 1.24479 1.24354 1.86989 1.19518 0.88198 0.85347 0.91237 1.67461 1.40805 0.99149 1.19824 1.23150 0.92482 0.94202 0.90385 1.22257 0.94440 0.99061 1.05854 1.21151 0.86223 0.93887 0.98906 1.98394 1.08652 1.97987 1.96185 1.19619 0.92115 0.95444 1.08988 1.20775 0.97385 0.93833 0.90424 1.61871 1.47403 1.02808 1.14101 1.22307 0.94253 0.94850 0.98729 1.19940 0.92306 0.87114 0.95917 1.21213 1.39608 1.01704 0.92721 0.94580 1.25825 0.95814 0.99114 0.98061 1.70051 1.47928 1.20453 1.20428 0.85732 0.79407 0.77866 0.80068 1.19181 1.20513 1.17280 0.91292 0.86903 0.92522 0.77233 0.80292 0.90232 0.93349 0.91795 0.93659 0.95493 0.95214 0.99345 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 10.38 113.37 1.18 2.07 16 2 O -0.32 -10.25 9.54 -89.90 -0.86 -11.11 16 3 C 0.34 10.46 7.46 84.76 0.63 11.09 16 4 N -0.55 -14.06 9.22 -308.99 -2.85 -16.91 16 5 C 0.15 2.80 11.17 84.63 0.95 3.75 16 6 C -0.20 -3.66 9.93 22.39 0.22 -3.44 16 7 C 0.03 0.86 5.28 22.52 0.12 0.98 16 8 Cl -0.04 -1.04 24.32 -2.72 -0.07 -1.11 16 9 C -0.16 -4.99 4.91 -19.65 -0.10 -5.09 16 10 C 0.10 3.78 4.70 85.56 0.40 4.19 16 11 N -0.54 -23.85 4.74 -931.66 -4.42 -28.27 16 12 C 0.05 1.92 7.83 127.69 1.00 2.92 16 13 C 0.17 8.73 3.79 85.56 0.32 9.05 16 14 C -0.51 -30.73 9.01 25.60 0.23 -30.50 16 15 H 0.04 2.41 7.37 -2.91 -0.02 2.39 16 16 C 0.01 0.54 5.47 84.65 0.46 1.00 16 17 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 18 Si 0.95 44.87 27.47 68.60 1.88 46.76 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 22 H 0.07 1.38 8.10 -2.38 -0.02 1.36 16 23 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 25 H 0.21 1.84 8.06 -2.91 -0.02 1.81 16 26 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 27 H 0.08 2.95 7.34 -2.39 -0.02 2.93 16 28 H 0.05 1.66 7.00 -2.39 -0.02 1.64 16 29 H 0.06 2.33 5.62 -2.39 -0.01 2.32 16 30 H 0.04 2.12 6.76 -2.39 -0.02 2.11 16 31 H 0.03 1.03 7.17 -2.39 -0.02 1.01 16 32 H 0.03 1.49 6.99 -2.39 -0.02 1.47 16 33 H -0.01 -0.54 7.55 -2.39 -0.02 -0.56 16 34 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -72.10 294.50 0.46 -71.63 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 1.05 Total: 3.00 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 5.42 Total: -3.97 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -6.97 Total: -105.19 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.86 Total: -11.11 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.76 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.07 Total: -1.11 kcal Total: -72.10 0.46 -71.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248791616.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.481 kcal (2) G-P(sol) polarization free energy of solvation -72.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds