Wall clock time and date at job start Mon Mar 30 2020 00:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.34604 * 126.58204 * 84.69224 * 10 9 7 12 12 N 1.34197 * 108.05021 * 179.90116 * 11 10 9 13 13 C 1.30620 * 109.26102 * 0.36999 * 12 11 10 14 14 Cl 1.73599 * 125.66793 * 179.77295 * 13 12 11 15 15 N 1.35113 * 108.66523 * 359.77347 * 13 12 11 16 16 C 1.46500 * 126.40400 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.47900 * 195.00156 * 16 15 13 18 18 C 1.53092 * 109.47997 * 74.97557 * 16 15 13 19 19 C 1.53181 * 109.16320 * 182.40896 * 18 16 15 20 20 C 1.53178 * 109.03622 * 56.97952 * 19 18 16 21 21 C 1.53091 * 109.16457 * 303.01933 * 20 19 18 22 22 O 1.42903 * 109.48133 * 315.02523 * 16 15 13 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 25 25 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 26 26 H 1.08002 * 125.97537 * 359.97438 * 11 10 9 27 27 H 1.08997 * 109.52624 * 302.31417 * 18 16 15 28 28 H 1.09000 * 109.52400 * 62.44032 * 18 16 15 29 29 H 1.08992 * 109.54635 * 176.84870 * 19 18 16 30 30 H 1.09002 * 109.54415 * 297.11815 * 19 18 16 31 31 H 1.09003 * 109.51940 * 62.92739 * 20 19 18 32 32 H 1.09001 * 109.52430 * 183.11639 * 20 19 18 33 33 H 1.09001 * 109.47978 * 177.58615 * 21 20 19 34 34 H 1.08991 * 109.48361 * 297.61480 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 6 2.8279 -4.1844 1.0890 12 7 3.6231 -5.1805 0.6688 13 6 3.5469 -5.2732 -0.6318 14 17 4.4061 -6.4153 -1.6173 15 7 2.6883 -4.3324 -1.0829 16 6 2.3168 -4.0924 -2.4795 17 1 1.8278 -3.1219 -2.5638 18 6 1.3579 -5.1898 -2.9485 19 6 1.0216 -4.9659 -4.4261 20 6 2.3213 -4.9442 -5.2365 21 6 3.2430 -3.8563 -4.6791 22 8 3.4907 -4.1071 -3.2942 23 1 -0.4850 0.8400 0.0004 24 1 0.6245 -2.5529 0.8956 25 1 0.6244 -2.5609 -0.8844 26 1 2.6904 -3.8716 2.1135 27 1 1.8313 -6.1639 -2.8262 28 1 0.4436 -5.1523 -2.3562 29 1 0.3838 -5.7751 -4.7815 30 1 0.5037 -4.0138 -4.5420 31 1 2.8142 -5.9134 -5.1604 32 1 2.0956 -4.7302 -6.2812 33 1 4.1867 -3.8649 -5.2245 34 1 2.7663 -2.8827 -4.7927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250056553.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:03 Heat of formation + Delta-G solvation = -1.104829 kcal Electronic energy + Delta-G solvation = -19123.844194 eV Core-core repulsion = 16083.398191 eV Total energy + Delta-G solvation = -3040.446003 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.58454 -39.13986 -36.39151 -33.77131 -33.66561 -33.21519 -30.65207 -29.50890 -26.54641 -24.93101 -23.71023 -23.12272 -21.20035 -20.03476 -19.45020 -17.40216 -16.49695 -16.17721 -15.36503 -15.09253 -14.61742 -14.57621 -14.49174 -13.95244 -13.37057 -12.82508 -12.74567 -12.56676 -12.31098 -11.89773 -11.57652 -11.32300 -11.21099 -11.13723 -10.98662 -10.80580 -10.78065 -10.48741 -10.06285 -9.75172 -9.61235 -9.37730 -9.03384 -8.55759 -7.49644 -6.17553 -4.22881 1.90966 2.49517 3.01555 3.23544 3.30762 3.36372 3.67989 4.06260 4.35538 4.66550 4.71399 4.81146 4.81744 5.10466 5.17183 5.34011 5.42157 5.49450 5.63238 5.69334 5.76337 5.87003 5.96152 6.10096 6.15928 6.33256 6.46551 7.10131 7.24801 7.33880 7.46208 7.54656 7.77988 8.12211 8.49785 8.81916 9.42662 10.91277 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.007096 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.941774 B = 3945.070933 C = 4766.072480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.084 3.916 10 C 0.060 3.940 11 C -0.046 4.046 12 N -0.471 5.471 13 C 0.229 3.771 14 Cl 0.014 6.986 15 N -0.441 5.441 16 C 0.312 3.688 17 H 0.106 0.894 18 C -0.159 4.159 19 C -0.118 4.118 20 C -0.158 4.158 21 C 0.070 3.930 22 O -0.380 6.380 23 H 0.264 0.736 24 H 0.051 0.949 25 H 0.026 0.974 26 H 0.175 0.825 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -9.429 -10.136 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.046 3.954 10 C -0.053 4.053 11 C -0.191 4.191 12 N -0.193 5.193 13 C -0.056 4.056 14 Cl 0.041 6.959 15 N -0.131 5.131 16 C 0.169 3.831 17 H 0.124 0.876 18 C -0.197 4.197 19 C -0.156 4.156 20 C -0.195 4.195 21 C -0.007 4.007 22 O -0.298 6.298 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.192 0.808 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.676 -9.928 -9.762 14.179 hybrid contribution -0.118 1.352 -0.766 1.558 sum 2.559 -8.577 -10.528 13.819 Atomic orbital electron populations 1.69935 1.06001 1.27155 1.49985 1.24970 0.94885 0.99300 0.94827 0.86503 0.79998 0.82865 0.78222 1.20625 1.20987 1.19609 1.21035 0.93260 0.89508 1.51757 0.92239 1.17955 0.91110 0.87304 0.99068 1.22439 1.01800 0.96866 0.84244 1.21931 1.00582 0.97353 0.99238 1.70073 1.22296 1.20683 1.06292 1.22697 0.98987 0.94958 0.88981 1.98340 1.74256 1.55817 1.67447 1.45193 1.34968 1.26318 1.06654 1.21931 0.85237 0.99690 0.76209 0.87629 1.22469 1.00190 0.99714 0.97346 1.21567 0.97444 1.02954 0.93645 1.22236 0.96684 1.00625 1.00001 1.22587 1.00393 0.97350 0.80390 1.87870 1.30650 1.92684 1.18636 0.92622 0.93133 0.95560 0.80772 0.90376 0.89870 0.90837 0.91042 0.90918 0.90497 0.88299 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -13.87 9.09 -34.44 -0.31 -14.18 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.08 2.03 5.13 -29.03 -0.15 1.88 16 10 C 0.06 1.33 6.14 -81.55 -0.50 0.83 16 11 C -0.05 -0.99 11.79 -17.80 -0.21 -1.20 16 12 N -0.47 -10.18 11.26 -11.73 -0.13 -10.31 16 13 C 0.23 4.61 8.26 -90.21 -0.75 3.87 16 14 Cl 0.01 0.23 27.63 -51.86 -1.43 -1.20 16 15 N -0.44 -8.89 2.73 -108.31 -0.30 -9.18 16 16 C 0.31 5.34 3.16 -3.99 -0.01 5.33 16 17 H 0.11 1.97 7.05 -51.93 -0.37 1.60 16 18 C -0.16 -2.19 5.68 -26.59 -0.15 -2.34 16 19 C -0.12 -1.26 6.03 -26.55 -0.16 -1.42 16 20 C -0.16 -1.54 6.14 -26.59 -0.16 -1.70 16 21 C 0.07 0.82 6.84 37.20 0.25 1.08 16 22 O -0.38 -6.16 9.28 -35.23 -0.33 -6.48 16 23 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 24 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.03 0.65 7.29 -51.93 -0.38 0.27 16 26 H 0.18 3.41 8.06 -52.49 -0.42 2.99 16 27 H 0.08 1.09 7.72 -51.93 -0.40 0.69 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 300.07 15.07 4.52 4.52 Total: -1.00 -29.74 300.07 -8.69 -38.43 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.49 Total: -1.25 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.25 Total: -6.28 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.31 Total: -43.63 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.33 Total: -6.48 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.43 Total: -1.20 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.74 -8.69 -38.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056553.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.328 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds