Wall clock time and date at job start Mon Mar 30 2020 00:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.34604 * 126.58204 * 84.69224 * 10 9 7 12 12 N 1.34197 * 108.05021 * 179.90116 * 11 10 9 13 13 C 1.30620 * 109.26102 * 0.36999 * 12 11 10 14 14 Cl 1.73599 * 125.66793 * 179.77295 * 13 12 11 15 15 N 1.35113 * 108.66523 * 359.77347 * 13 12 11 16 16 C 1.46500 * 126.40400 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.47900 * 195.00156 * 16 15 13 18 18 C 1.53092 * 109.47997 * 74.97557 * 16 15 13 19 19 C 1.53181 * 109.16320 * 182.40896 * 18 16 15 20 20 C 1.53178 * 109.03622 * 56.97952 * 19 18 16 21 21 C 1.53091 * 109.16457 * 303.01933 * 20 19 18 22 22 O 1.42903 * 109.48133 * 315.02523 * 16 15 13 23 23 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 25 25 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 26 26 H 1.08002 * 125.97537 * 359.97438 * 11 10 9 27 27 H 1.08997 * 109.52624 * 302.31417 * 18 16 15 28 28 H 1.09000 * 109.52400 * 62.44032 * 18 16 15 29 29 H 1.08992 * 109.54635 * 176.84870 * 19 18 16 30 30 H 1.09002 * 109.54415 * 297.11815 * 19 18 16 31 31 H 1.09003 * 109.51940 * 62.92739 * 20 19 18 32 32 H 1.09001 * 109.52430 * 183.11639 * 20 19 18 33 33 H 1.09001 * 109.47978 * 177.58615 * 21 20 19 34 34 H 1.08991 * 109.48361 * 297.61480 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 6 2.8279 -4.1844 1.0890 12 7 3.6231 -5.1805 0.6688 13 6 3.5469 -5.2732 -0.6318 14 17 4.4061 -6.4153 -1.6173 15 7 2.6883 -4.3324 -1.0829 16 6 2.3168 -4.0924 -2.4795 17 1 1.8278 -3.1219 -2.5638 18 6 1.3579 -5.1898 -2.9485 19 6 1.0216 -4.9659 -4.4261 20 6 2.3213 -4.9442 -5.2365 21 6 3.2430 -3.8563 -4.6791 22 8 3.4907 -4.1071 -3.2942 23 1 -0.4850 0.8400 0.0004 24 1 0.6245 -2.5529 0.8956 25 1 0.6244 -2.5609 -0.8844 26 1 2.6904 -3.8716 2.1135 27 1 1.8313 -6.1639 -2.8262 28 1 0.4436 -5.1523 -2.3562 29 1 0.3838 -5.7751 -4.7815 30 1 0.5037 -4.0138 -4.5420 31 1 2.8142 -5.9134 -5.1604 32 1 2.0956 -4.7302 -6.2812 33 1 4.1867 -3.8649 -5.2245 34 1 2.7663 -2.8827 -4.7927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056553.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:02 Heat of formation + Delta-G solvation = -18.032268 kcal Electronic energy + Delta-G solvation = -19124.578223 eV Core-core repulsion = 16083.398191 eV Total energy + Delta-G solvation = -3041.180031 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.17901 -40.29429 -37.85380 -35.57964 -34.82900 -34.70784 -32.48876 -30.75876 -28.41565 -26.06305 -25.17852 -24.73721 -22.64020 -21.22688 -20.98516 -18.92054 -18.51752 -17.38266 -16.71738 -16.47915 -16.40319 -16.00096 -15.61263 -15.08055 -14.80865 -14.52185 -14.22182 -13.96963 -13.77855 -13.52701 -13.02749 -12.82306 -12.72186 -12.54360 -12.36209 -12.23627 -12.00312 -11.90841 -11.62491 -11.51246 -11.11451 -11.02429 -10.62935 -10.39894 -9.20591 -8.24058 -6.37459 0.37046 0.88490 1.38591 1.41027 1.51924 1.61141 1.98907 2.39456 2.80921 3.07197 3.53218 3.65868 3.73189 3.87901 3.93763 4.06671 4.34537 4.40306 4.51506 4.60679 4.67363 4.78893 4.81174 4.92545 5.03175 5.05331 5.21666 5.30278 5.54611 5.61265 5.67413 5.86741 6.03177 6.14028 6.70884 6.84447 7.31620 8.83849 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.007096 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.941774 B = 3945.070933 C = 4766.072480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.046 0.954 9 C 0.099 3.901 10 C 0.037 3.963 11 C -0.048 4.048 12 N -0.491 5.491 13 C 0.231 3.769 14 Cl 0.048 6.952 15 N -0.442 5.442 16 C 0.309 3.691 17 H 0.082 0.918 18 C -0.151 4.151 19 C -0.115 4.115 20 C -0.149 4.149 21 C 0.058 3.942 22 O -0.399 6.399 23 H 0.268 0.732 24 H 0.035 0.965 25 H 0.015 0.985 26 H 0.186 0.814 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.759 -9.841 -11.806 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.064 0.936 9 C 0.061 3.939 10 C -0.077 4.077 11 C -0.194 4.194 12 N -0.214 5.214 13 C -0.055 4.055 14 Cl 0.076 6.924 15 N -0.131 5.131 16 C 0.167 3.833 17 H 0.100 0.900 18 C -0.190 4.190 19 C -0.153 4.153 20 C -0.186 4.186 21 C -0.018 4.018 22 O -0.318 6.318 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.203 0.797 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.322 -10.345 -11.463 15.794 hybrid contribution -0.270 1.417 -0.322 1.478 sum 3.052 -8.928 -11.785 15.097 Atomic orbital electron populations 1.70019 1.07198 1.28188 1.50437 1.25701 0.95673 1.02387 0.94282 0.85555 0.78645 0.79020 0.78529 1.19766 1.20106 1.19711 1.21202 0.92747 0.90991 1.52068 0.93579 1.17606 0.91067 0.87586 0.97661 1.22076 1.02744 0.97419 0.85485 1.22195 1.00176 0.97201 0.99780 1.70090 1.22980 1.21108 1.07213 1.23111 0.98265 0.94918 0.89193 1.98346 1.73344 1.54331 1.66413 1.45352 1.34476 1.25753 1.07555 1.22032 0.86121 0.99843 0.75261 0.90046 1.22434 0.98738 0.98295 0.99498 1.21614 0.98519 1.03798 0.91367 1.22203 0.95369 0.99906 1.01169 1.22957 1.02251 0.98200 0.78416 1.87839 1.30369 1.92899 1.20667 0.92251 0.94721 0.96659 0.79669 0.90258 0.90802 0.88470 0.91225 0.90514 0.87566 0.86166 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.76 13.29 21.45 0.28 -51.47 16 2 C 0.02 1.05 5.46 84.65 0.46 1.51 16 3 Si 0.96 42.87 29.54 68.60 2.03 44.89 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.53 -29.18 9.09 25.60 0.23 -28.95 16 8 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 9 C 0.10 4.99 5.13 29.10 0.15 5.13 16 10 C 0.04 1.68 6.14 40.91 0.25 1.93 16 11 C -0.05 -2.11 11.79 83.50 0.98 -1.13 16 12 N -0.49 -21.17 11.26 -191.04 -2.15 -23.32 16 13 C 0.23 9.21 8.26 180.21 1.49 10.70 16 14 Cl 0.05 1.52 27.63 -2.72 -0.08 1.44 16 15 N -0.44 -17.98 2.73 -597.04 -1.63 -19.61 16 16 C 0.31 10.62 3.16 86.41 0.27 10.90 16 17 H 0.08 3.16 7.05 -2.39 -0.02 3.14 16 18 C -0.15 -4.05 5.68 30.69 0.17 -3.88 16 19 C -0.12 -2.21 6.03 30.71 0.19 -2.02 16 20 C -0.15 -2.45 6.14 30.68 0.19 -2.26 16 21 C 0.06 1.25 6.84 72.01 0.49 1.74 16 22 O -0.40 -12.55 9.28 -148.98 -1.38 -13.93 16 23 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 24 H 0.03 1.82 8.14 -2.39 -0.02 1.81 16 25 H 0.02 0.79 7.29 -2.38 -0.02 0.77 16 26 H 0.19 7.40 8.06 -2.91 -0.02 7.37 16 27 H 0.08 2.10 7.72 -2.39 -0.02 2.08 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -63.43 300.07 3.05 -60.38 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.10 Total: 7.93 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 4.88 Total: -6.32 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -3.50 Total: -94.41 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -1.38 Total: -13.93 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 17 Polarization: 1.52 SS G_CDS: -0.08 Total: 1.44 kcal Total: -63.43 3.05 -60.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056553.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.351 kcal (2) G-P(sol) polarization free energy of solvation -63.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds