Wall clock time and date at job start Mon Mar 30 2020 00:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38421 * 120.02497 * 269.72027 * 10 9 7 12 12 F 1.35106 * 120.01060 * 0.02562 * 11 10 9 13 13 C 1.38474 * 119.97411 * 179.79173 * 11 10 9 14 14 C 1.38208 * 120.02676 * 0.48514 * 13 11 10 15 15 C 1.50691 * 119.97789 * 179.76831 * 14 13 11 16 16 O 1.43749 * 109.63294 * 119.34131 * 15 14 13 17 17 C 1.44788 * 104.81720 * 215.80955 * 16 15 14 18 18 C 1.54913 * 101.72105 * 36.10361 * 17 16 15 19 19 O 1.43375 * 109.62861 * 359.97438 * 15 14 13 20 20 C 1.38211 * 120.04829 * 359.74753 * 14 13 11 21 21 C 1.38411 * 120.02675 * 89.99791 * 10 9 7 22 22 F 1.35105 * 120.01175 * 0.02562 * 21 10 9 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.08004 * 119.98784 * 180.23488 * 13 11 10 27 27 H 1.09000 * 109.63070 * 239.58829 * 15 14 13 28 28 H 1.09002 * 110.97519 * 277.99670 * 17 16 15 29 29 H 1.08999 * 110.97498 * 154.21511 * 17 16 15 30 30 H 1.08996 * 110.69650 * 206.04335 * 18 17 16 31 31 H 1.08995 * 110.83870 * 82.90532 * 18 17 16 32 32 H 1.07999 * 119.98715 * 179.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6758 -4.1749 -1.1979 12 9 2.2334 -3.6654 -2.3684 13 6 3.5790 -5.2246 -1.1967 14 6 4.0277 -5.7495 0.0005 15 6 5.0065 -6.8952 0.0005 16 8 6.2178 -6.4957 0.6637 17 6 7.2764 -7.1612 -0.0663 18 6 6.7418 -7.1025 -1.5191 19 8 5.3187 -7.2620 -1.3499 20 6 3.5798 -5.2240 1.1977 21 6 2.6803 -4.1711 1.1989 22 9 2.2415 -3.6585 2.3694 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 3.9297 -5.6360 -2.1317 27 1 4.5713 -7.7487 0.5204 28 1 7.3907 -8.1929 0.2661 29 1 8.2161 -6.6166 0.0261 30 1 7.1528 -7.9181 -2.1140 31 1 6.9698 -6.1403 -1.9776 32 1 3.9308 -5.6351 2.1327 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057396.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:40 Heat of formation + Delta-G solvation = -157.169209 kcal Electronic energy + Delta-G solvation = -20445.471757 eV Core-core repulsion = 16814.168864 eV Total energy + Delta-G solvation = -3631.302893 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.24412 -48.23236 -40.67617 -38.20489 -35.24466 -33.75586 -31.96110 -30.01913 -29.82454 -27.52987 -24.90238 -23.57058 -22.67198 -22.23649 -20.55019 -17.87858 -17.53724 -16.63943 -16.46753 -16.39334 -15.90495 -15.33504 -15.12511 -14.96563 -14.73516 -14.53858 -14.33228 -13.78387 -13.56665 -13.06779 -12.92638 -12.34494 -12.18499 -11.92150 -11.75517 -11.43284 -11.25113 -11.08204 -10.62696 -10.57106 -10.46446 -9.96555 -9.73248 -9.51251 -8.44187 -8.24602 -8.03605 -6.05826 -4.10047 1.43689 1.48462 3.19904 3.30524 3.37304 3.42647 3.64242 3.92062 4.30240 4.44197 4.47600 4.62710 4.77390 4.87650 4.97499 5.17615 5.18424 5.24749 5.35153 5.41562 5.44661 5.58872 5.70331 6.04254 6.39633 6.45200 6.55391 6.64058 6.87768 7.29745 7.47397 7.54855 7.87642 8.22690 8.92415 9.53441 11.04572 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025986 B = 0.005037 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.256478 B = 5557.135497 C = 5670.583378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.095 4.095 11 C 0.117 3.883 12 F -0.127 7.127 13 C -0.137 4.137 14 C -0.094 4.094 15 C 0.286 3.714 16 O -0.368 6.368 17 C 0.016 3.984 18 C 0.019 3.981 19 O -0.377 6.377 20 C -0.141 4.141 21 C 0.118 3.882 22 F -0.126 7.126 23 H 0.263 0.737 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.141 0.859 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.540 -15.819 -0.946 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.012 3.988 10 C -0.097 4.097 11 C 0.098 3.902 12 F -0.105 7.105 13 C -0.156 4.156 14 C -0.095 4.095 15 C 0.191 3.809 16 O -0.289 6.289 17 C -0.061 4.061 18 C -0.057 4.057 19 O -0.298 6.298 20 C -0.160 4.160 21 C 0.099 3.901 22 F -0.105 7.105 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.159 0.841 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.211 -15.585 -0.913 19.820 hybrid contribution 0.419 1.105 -0.003 1.182 sum 12.630 -14.480 -0.916 19.236 Atomic orbital electron populations 1.69960 1.06041 1.26860 1.50118 1.24974 0.94917 0.99281 0.94890 0.86430 0.80103 0.83235 0.77680 1.19641 1.20812 1.20796 1.20967 0.92936 0.89510 1.51623 0.92453 1.18315 0.92275 0.88716 0.99523 1.20889 1.00124 0.98504 0.90177 1.17149 0.97101 0.94634 0.81361 1.91504 1.87817 1.86211 1.44963 1.20823 0.98731 0.96751 0.99279 1.19218 0.99312 0.98429 0.92538 1.22545 0.85667 0.93286 0.79421 1.89341 1.15157 1.70882 1.53503 1.24408 0.92835 0.98884 0.89963 1.24226 0.80621 1.03382 0.97481 1.88897 1.23357 1.88058 1.29469 1.20715 0.98917 0.97648 0.98708 1.17086 0.97065 0.94584 0.81386 1.91506 1.87922 1.86109 1.44929 0.92763 0.94237 0.94250 0.84149 0.88280 0.90486 0.87236 0.88081 0.90298 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.89 9.09 -34.44 -0.31 -15.20 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.05 1.30 4.75 -29.03 -0.14 1.17 16 10 C -0.10 -2.16 5.08 -104.49 -0.53 -2.69 16 11 C 0.12 2.42 7.24 -39.43 -0.29 2.13 16 12 F -0.13 -2.76 16.47 2.25 0.04 -2.72 16 13 C -0.14 -2.35 9.36 -39.51 -0.37 -2.72 16 14 C -0.09 -1.49 5.56 -104.65 -0.58 -2.07 16 15 C 0.29 3.60 4.30 36.00 0.15 3.76 16 16 O -0.37 -4.58 11.24 -59.04 -0.66 -5.25 16 17 C 0.02 0.12 7.95 38.17 0.30 0.43 16 18 C 0.02 0.16 8.07 38.17 0.31 0.47 16 19 O -0.38 -4.53 9.70 -59.04 -0.57 -5.10 16 20 C -0.14 -2.36 9.61 -39.50 -0.38 -2.74 16 21 C 0.12 2.43 7.24 -39.43 -0.29 2.14 16 22 F -0.13 -2.73 16.48 2.25 0.04 -2.69 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.04 1.11 7.64 -51.93 -0.40 0.72 16 25 H 0.04 1.11 7.63 -51.93 -0.40 0.72 16 26 H 0.14 2.16 7.01 -52.48 -0.37 1.79 16 27 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 288.86 15.07 4.35 4.35 Total: -1.00 -32.23 288.86 -6.55 -38.77 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: -3.24 Total: -4.64 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -2.22 Total: -13.65 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.24 Total: -10.35 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.07 Total: -5.42 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.23 -6.55 -38.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057396.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.397 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds