Wall clock time and date at job start Mon Mar 30 2020 00:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38421 * 120.02497 * 269.72027 * 10 9 7 12 12 F 1.35106 * 120.01060 * 0.02562 * 11 10 9 13 13 C 1.38474 * 119.97411 * 179.79173 * 11 10 9 14 14 C 1.38208 * 120.02676 * 0.48514 * 13 11 10 15 15 C 1.50691 * 119.97789 * 179.76831 * 14 13 11 16 16 O 1.43749 * 109.63294 * 119.34131 * 15 14 13 17 17 C 1.44788 * 104.81720 * 215.80955 * 16 15 14 18 18 C 1.54913 * 101.72105 * 36.10361 * 17 16 15 19 19 O 1.43375 * 109.62861 * 359.97438 * 15 14 13 20 20 C 1.38211 * 120.04829 * 359.74753 * 14 13 11 21 21 C 1.38411 * 120.02675 * 89.99791 * 10 9 7 22 22 F 1.35105 * 120.01175 * 0.02562 * 21 10 9 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.08004 * 119.98784 * 180.23488 * 13 11 10 27 27 H 1.09000 * 109.63070 * 239.58829 * 15 14 13 28 28 H 1.09002 * 110.97519 * 277.99670 * 17 16 15 29 29 H 1.08999 * 110.97498 * 154.21511 * 17 16 15 30 30 H 1.08996 * 110.69650 * 206.04335 * 18 17 16 31 31 H 1.08995 * 110.83870 * 82.90532 * 18 17 16 32 32 H 1.07999 * 119.98715 * 179.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6758 -4.1749 -1.1979 12 9 2.2334 -3.6654 -2.3684 13 6 3.5790 -5.2246 -1.1967 14 6 4.0277 -5.7495 0.0005 15 6 5.0065 -6.8952 0.0005 16 8 6.2178 -6.4957 0.6637 17 6 7.2764 -7.1612 -0.0663 18 6 6.7418 -7.1025 -1.5191 19 8 5.3187 -7.2620 -1.3499 20 6 3.5798 -5.2240 1.1977 21 6 2.6803 -4.1711 1.1989 22 9 2.2415 -3.6585 2.3694 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 3.9297 -5.6360 -2.1317 27 1 4.5713 -7.7487 0.5204 28 1 7.3907 -8.1929 0.2661 29 1 8.2161 -6.6166 0.0261 30 1 7.1528 -7.9181 -2.1140 31 1 6.9698 -6.1403 -1.9776 32 1 3.9308 -5.6351 2.1327 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057396.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:40 Heat of formation + Delta-G solvation = -177.385342 kcal Electronic energy + Delta-G solvation = -20446.348394 eV Core-core repulsion = 16814.168864 eV Total energy + Delta-G solvation = -3632.179531 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.90603 -49.89440 -41.56660 -39.62648 -36.07989 -35.73102 -33.69622 -31.30661 -31.13420 -29.10829 -26.46244 -24.42948 -24.27509 -23.62648 -22.11738 -19.12013 -18.71051 -18.63560 -17.80518 -17.54541 -17.08812 -16.89297 -16.62925 -16.49678 -16.21842 -16.19989 -15.61244 -15.10219 -14.50778 -14.46145 -14.28468 -13.88348 -13.71820 -13.49649 -13.33566 -12.90730 -12.84613 -12.57224 -12.46709 -12.31406 -11.73574 -11.65420 -11.14936 -10.83244 -10.68588 -9.74387 -9.69440 -8.28207 -6.42482 -0.05422 -0.01599 1.35299 1.36513 1.49978 2.19373 2.37237 2.53099 2.74209 3.03039 3.12892 3.46785 3.59700 3.74825 3.82470 3.96909 4.09920 4.13928 4.21361 4.34043 4.60483 4.66171 4.79956 4.80696 4.97842 5.01643 5.05249 5.16051 5.16441 5.43083 5.61786 5.77083 6.02377 6.02576 6.66815 7.25951 8.82596 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025986 B = 0.005037 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.256478 B = 5557.135497 C = 5670.583378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.059 3.941 10 C -0.132 4.132 11 C 0.100 3.900 12 F -0.141 7.141 13 C -0.121 4.121 14 C -0.079 4.079 15 C 0.289 3.711 16 O -0.391 6.391 17 C 0.013 3.987 18 C 0.012 3.988 19 O -0.392 6.392 20 C -0.121 4.121 21 C 0.102 3.898 22 F -0.140 7.140 23 H 0.268 0.732 24 H 0.011 0.989 25 H 0.010 0.990 26 H 0.163 0.837 27 H 0.128 0.872 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.073 0.927 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.458 -17.352 -0.866 23.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.023 3.977 10 C -0.133 4.133 11 C 0.080 3.920 12 F -0.120 7.120 13 C -0.140 4.140 14 C -0.080 4.080 15 C 0.194 3.806 16 O -0.312 6.312 17 C -0.062 4.062 18 C -0.064 4.064 19 O -0.313 6.313 20 C -0.140 4.140 21 C 0.082 3.918 22 F -0.118 7.118 23 H 0.077 0.923 24 H 0.029 0.971 25 H 0.028 0.972 26 H 0.180 0.820 27 H 0.145 0.855 28 H 0.120 0.880 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.092 0.908 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 15.143 -17.135 -0.839 22.882 hybrid contribution -0.403 1.454 -0.054 1.510 sum 14.739 -15.681 -0.893 21.539 Atomic orbital electron populations 1.70080 1.07709 1.28189 1.50633 1.25955 0.95880 1.03274 0.94093 0.85322 0.78790 0.78240 0.78274 1.18957 1.19722 1.19687 1.21263 0.92860 0.91000 1.52010 0.92967 1.17936 0.92668 0.90501 0.96637 1.20609 1.01479 0.98915 0.92337 1.17384 0.98380 0.95970 0.80217 1.91457 1.88253 1.86708 1.45549 1.21028 0.96953 0.95018 1.01021 1.19788 0.98610 0.98274 0.91354 1.22623 0.85440 0.92134 0.80384 1.89310 1.15914 1.71920 1.54029 1.24719 0.92227 1.00300 0.88956 1.24503 0.78998 1.04494 0.98378 1.88891 1.25518 1.87778 1.29102 1.20996 0.96750 0.95607 1.00667 1.17334 0.98318 0.95937 0.80178 1.91463 1.88342 1.86599 1.45425 0.92282 0.97067 0.97180 0.81993 0.85488 0.88033 0.85478 0.85026 0.90832 0.81438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.97 45.95 29.54 68.60 2.03 47.98 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.53 -32.31 9.09 25.60 0.23 -32.08 16 8 H 0.05 3.13 7.74 -2.91 -0.02 3.10 16 9 C 0.06 3.42 4.75 29.10 0.14 3.56 16 10 C -0.13 -6.24 5.08 -19.78 -0.10 -6.34 16 11 C 0.10 4.21 7.24 22.37 0.16 4.37 16 12 F -0.14 -6.40 16.47 44.97 0.74 -5.66 16 13 C -0.12 -3.99 9.36 22.32 0.21 -3.78 16 14 C -0.08 -2.30 5.56 -19.88 -0.11 -2.41 16 15 C 0.29 6.15 4.30 71.23 0.31 6.46 16 16 O -0.39 -8.16 11.24 -126.22 -1.42 -9.58 16 17 C 0.01 0.15 7.95 72.64 0.58 0.73 16 18 C 0.01 0.15 8.07 72.64 0.59 0.74 16 19 O -0.39 -7.91 9.70 -126.22 -1.22 -9.13 16 20 C -0.12 -3.84 9.61 22.32 0.21 -3.63 16 21 C 0.10 4.23 7.24 22.37 0.16 4.39 16 22 F -0.14 -6.23 16.48 44.97 0.74 -5.49 16 23 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 24 H 0.01 0.68 7.64 -2.39 -0.02 0.66 16 25 H 0.01 0.61 7.63 -2.39 -0.02 0.59 16 26 H 0.16 4.61 7.01 -2.91 -0.02 4.59 16 27 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.17 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -72.96 288.86 5.14 -67.82 By element: Atomic # 1 Polarization: -2.43 SS G_CDS: 1.15 Total: -1.28 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 2.84 Total: -27.14 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.28 Total: -57.52 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -2.64 Total: -18.71 kcal Atomic # 9 Polarization: -12.62 SS G_CDS: 1.48 Total: -11.14 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -72.96 5.14 -67.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057396.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.565 kcal (2) G-P(sol) polarization free energy of solvation -72.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds