Wall clock time and date at job start Mon Mar 30 2020 01:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00353 * 2 1 4 4 H 1.48505 * 109.47162 * 270.00293 * 3 2 1 5 5 H 1.48506 * 109.47118 * 30.00045 * 3 2 1 6 6 H 1.48500 * 109.47153 * 149.99921 * 3 2 1 7 7 C 1.37878 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00188 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00272 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47564 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47536 * 180.02562 * 10 9 7 12 12 C 1.32560 * 120.00150 * 124.99971 * 11 10 9 13 13 C 1.47819 * 120.00196 * 180.02562 * 12 11 10 14 14 C 1.39556 * 120.13884 * 0.02562 * 13 12 11 15 15 C 1.37944 * 119.85617 * 179.97438 * 14 13 12 16 16 C 1.38373 * 120.14344 * 0.02562 * 15 14 13 17 17 C 1.38321 * 120.28249 * 359.70038 * 16 15 14 18 18 C 1.37996 * 120.14155 * 0.55313 * 17 16 15 19 19 C 1.50703 * 120.07222 * 179.74680 * 18 17 16 20 20 F 1.39905 * 109.47157 * 359.72423 * 19 18 17 21 21 F 1.39900 * 109.47159 * 239.72724 * 19 18 17 22 22 F 1.39897 * 109.47274 * 119.72415 * 19 18 17 23 23 H 0.97001 * 119.99938 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46871 * 60.00608 * 9 7 2 25 25 H 1.08992 * 109.47467 * 300.00396 * 9 7 2 26 26 H 1.09000 * 109.46266 * 60.00015 * 10 9 7 27 27 H 1.09000 * 109.46925 * 300.00840 * 10 9 7 28 28 H 1.08004 * 119.99906 * 305.00654 * 11 10 9 29 29 H 1.07999 * 120.00023 * 0.02562 * 12 11 10 30 30 H 1.08004 * 120.07228 * 359.96063 * 14 13 12 31 31 H 1.08000 * 119.93332 * 179.97438 * 15 14 13 32 32 H 1.08000 * 119.85507 * 179.97438 * 16 15 14 33 33 H 1.08003 * 119.92973 * 180.30182 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5284 -2.6368 -0.0009 12 6 6.1912 -3.2952 0.9395 13 6 7.6693 -3.2948 0.9399 14 6 8.3701 -2.6018 -0.0481 15 6 9.7496 -2.6049 -0.0419 16 6 10.4384 -3.2936 0.9409 17 6 9.7497 -3.9778 1.9262 18 6 8.3698 -3.9868 1.9282 19 6 7.6211 -4.7375 2.9992 20 9 8.5341 -5.3454 3.8676 21 9 6.8176 -5.7175 2.4068 22 9 6.8166 -3.8464 3.7176 23 1 -0.4850 0.8401 0.0004 24 1 3.8751 -0.6806 0.8889 25 1 3.8745 -0.6801 -0.8910 26 1 3.6577 -3.1506 -0.8908 27 1 3.6583 -3.1503 0.8892 28 1 6.0685 -2.1003 -0.7671 29 1 5.6511 -3.8319 1.7055 30 1 7.8336 -2.0644 -0.8161 31 1 10.2931 -2.0694 -0.8062 32 1 11.5184 -3.2933 0.9411 33 1 10.2932 -4.5094 2.6934 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060282.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:25 Heat of formation + Delta-G solvation = -125.118898 kcal Electronic energy + Delta-G solvation = -19843.641541 eV Core-core repulsion = 16226.101243 eV Total energy + Delta-G solvation = -3617.540298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.19062 -47.73164 -47.58120 -39.58783 -35.63587 -33.21568 -32.22218 -31.50403 -29.03932 -26.21472 -25.14790 -23.18277 -21.91861 -20.55581 -19.27518 -18.46731 -18.42240 -18.38250 -16.71818 -16.34315 -15.28258 -14.83353 -14.54351 -14.50730 -14.31282 -14.22110 -14.06787 -13.77416 -13.75544 -13.37603 -13.16952 -12.82194 -12.68834 -12.61966 -11.86243 -11.55451 -11.47174 -11.13123 -10.84142 -10.44867 -10.04692 -9.83734 -9.70430 -9.41955 -9.23150 -8.56248 -8.09822 -6.06515 -4.05183 0.61612 0.94165 2.54418 2.63828 3.28827 3.36863 3.40529 3.51083 3.68311 3.98458 4.42401 4.43208 4.53989 4.63637 4.71886 5.04122 5.15613 5.25106 5.28321 5.43763 5.66513 5.80186 5.97166 6.03293 6.13308 6.22328 6.35917 6.55151 6.63925 6.86283 6.94235 7.22217 7.37856 7.75341 8.50484 8.97980 9.55489 11.06888 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.023478 B = 0.004353 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.334914 B = 6430.715284 C = 7076.737322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.088 4.088 11 C -0.076 4.076 12 C -0.187 4.187 13 C 0.024 3.976 14 C -0.130 4.130 15 C -0.082 4.082 16 C -0.139 4.139 17 C -0.069 4.069 18 C -0.191 4.191 19 C 0.510 3.490 20 F -0.182 7.182 21 F -0.174 7.174 22 F -0.172 7.172 23 H 0.263 0.737 24 H 0.018 0.982 25 H 0.013 0.987 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.137 0.863 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.439 -7.896 2.492 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.046 4.046 10 C -0.125 4.125 11 C -0.094 4.094 12 C -0.205 4.205 13 C 0.024 3.976 14 C -0.147 4.147 15 C -0.100 4.100 16 C -0.157 4.157 17 C -0.087 4.087 18 C -0.192 4.192 19 C 0.456 3.544 20 F -0.164 7.164 21 F -0.156 7.156 22 F -0.154 7.154 23 H 0.073 0.927 24 H 0.036 0.964 25 H 0.032 0.968 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 22.251 -7.801 2.533 23.715 hybrid contribution 0.229 0.805 0.223 0.866 sum 22.480 -6.996 2.756 23.705 Atomic orbital electron populations 1.69909 1.06310 1.26938 1.50975 1.25020 0.94728 0.99171 0.94490 0.86786 0.80440 0.83638 0.78499 1.20254 1.21321 1.18971 1.21132 0.89320 0.94590 1.51052 0.90909 1.19535 0.97198 0.91345 0.96522 1.20817 0.88693 1.00689 1.02310 1.23948 0.98174 0.92216 0.95076 1.21712 0.90388 1.05795 1.02609 1.18910 0.93998 0.92593 0.92100 1.21378 0.94243 1.00158 0.98946 1.21303 0.94175 0.96803 0.97713 1.21113 1.00191 0.99058 0.95311 1.20908 0.92048 0.97348 0.98408 1.20022 0.94783 1.05884 0.98536 1.18237 0.77466 0.77548 0.81167 1.93138 1.66894 1.84371 1.71952 1.93223 1.74668 1.64032 1.83638 1.93244 1.74537 1.67970 1.79606 0.92684 0.96379 0.96846 0.90708 0.91642 0.87105 0.85991 0.84523 0.85163 0.85157 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.85 9.66 -34.44 -0.33 -15.19 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.20 4.02 -27.88 -0.11 -0.32 16 10 C -0.09 -1.70 5.60 -27.88 -0.16 -1.86 16 11 C -0.08 -1.21 8.94 -36.22 -0.32 -1.54 16 12 C -0.19 -2.86 8.42 -37.57 -0.32 -3.18 16 13 C 0.02 0.33 5.84 -105.01 -0.61 -0.29 16 14 C -0.13 -1.47 9.40 -39.20 -0.37 -1.84 16 15 C -0.08 -0.75 10.03 -39.64 -0.40 -1.15 16 16 C -0.14 -1.21 10.04 -39.50 -0.40 -1.61 16 17 C -0.07 -0.70 9.42 -39.64 -0.37 -1.08 16 18 C -0.19 -2.41 5.40 -104.24 -0.56 -2.97 16 19 C 0.51 6.73 2.79 36.01 0.10 6.83 16 20 F -0.18 -2.19 15.98 2.25 0.04 -2.15 16 21 F -0.17 -2.43 16.00 2.25 0.04 -2.40 16 22 F -0.17 -2.52 16.00 2.25 0.04 -2.48 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 25 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 26 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.06 1.28 7.81 -51.93 -0.41 0.88 16 28 H 0.11 1.53 6.04 -52.48 -0.32 1.22 16 29 H 0.12 1.94 5.68 -52.49 -0.30 1.64 16 30 H 0.14 1.40 6.17 -52.48 -0.32 1.08 16 31 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.14 1.12 7.15 -52.48 -0.38 0.74 16 LS Contribution 293.37 15.07 4.42 4.42 Total: -1.00 -30.84 293.37 -6.66 -37.50 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -3.34 Total: -2.46 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -3.95 Total: -22.32 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 0.77 Total: -27.08 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.11 Total: -7.03 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.84 -6.66 -37.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060282.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.620 kcal (2) G-P(sol) polarization free energy of solvation -30.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds