Wall clock time and date at job start Mon Mar 30 2020 01:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00353 * 2 1 4 4 H 1.48505 * 109.47162 * 270.00293 * 3 2 1 5 5 H 1.48506 * 109.47118 * 30.00045 * 3 2 1 6 6 H 1.48500 * 109.47153 * 149.99921 * 3 2 1 7 7 C 1.37878 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00188 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00272 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47564 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47536 * 180.02562 * 10 9 7 12 12 C 1.32560 * 120.00150 * 124.99971 * 11 10 9 13 13 C 1.47819 * 120.00196 * 180.02562 * 12 11 10 14 14 C 1.39556 * 120.13884 * 0.02562 * 13 12 11 15 15 C 1.37944 * 119.85617 * 179.97438 * 14 13 12 16 16 C 1.38373 * 120.14344 * 0.02562 * 15 14 13 17 17 C 1.38321 * 120.28249 * 359.70038 * 16 15 14 18 18 C 1.37996 * 120.14155 * 0.55313 * 17 16 15 19 19 C 1.50703 * 120.07222 * 179.74680 * 18 17 16 20 20 F 1.39905 * 109.47157 * 359.72423 * 19 18 17 21 21 F 1.39900 * 109.47159 * 239.72724 * 19 18 17 22 22 F 1.39897 * 109.47274 * 119.72415 * 19 18 17 23 23 H 0.97001 * 119.99938 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46871 * 60.00608 * 9 7 2 25 25 H 1.08992 * 109.47467 * 300.00396 * 9 7 2 26 26 H 1.09000 * 109.46266 * 60.00015 * 10 9 7 27 27 H 1.09000 * 109.46925 * 300.00840 * 10 9 7 28 28 H 1.08004 * 119.99906 * 305.00654 * 11 10 9 29 29 H 1.07999 * 120.00023 * 0.02562 * 12 11 10 30 30 H 1.08004 * 120.07228 * 359.96063 * 14 13 12 31 31 H 1.08000 * 119.93332 * 179.97438 * 15 14 13 32 32 H 1.08000 * 119.85507 * 179.97438 * 16 15 14 33 33 H 1.08003 * 119.92973 * 180.30182 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5284 -2.6368 -0.0009 12 6 6.1912 -3.2952 0.9395 13 6 7.6693 -3.2948 0.9399 14 6 8.3701 -2.6018 -0.0481 15 6 9.7496 -2.6049 -0.0419 16 6 10.4384 -3.2936 0.9409 17 6 9.7497 -3.9778 1.9262 18 6 8.3698 -3.9868 1.9282 19 6 7.6211 -4.7375 2.9992 20 9 8.5341 -5.3454 3.8676 21 9 6.8176 -5.7175 2.4068 22 9 6.8166 -3.8464 3.7176 23 1 -0.4850 0.8401 0.0004 24 1 3.8751 -0.6806 0.8889 25 1 3.8745 -0.6801 -0.8910 26 1 3.6577 -3.1506 -0.8908 27 1 3.6583 -3.1503 0.8892 28 1 6.0685 -2.1003 -0.7671 29 1 5.6511 -3.8319 1.7055 30 1 7.8336 -2.0644 -0.8161 31 1 10.2931 -2.0694 -0.8062 32 1 11.5184 -3.2933 0.9411 33 1 10.2932 -4.5094 2.6934 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060282.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:24 Heat of formation + Delta-G solvation = -141.169572 kcal Electronic energy + Delta-G solvation = -19844.337550 eV Core-core repulsion = 16226.101243 eV Total energy + Delta-G solvation = -3618.236307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -51.23698 -48.75242 -48.67525 -40.42023 -37.02949 -35.00065 -33.30570 -32.85534 -30.40105 -27.45174 -26.49937 -24.27913 -23.01657 -22.13163 -20.47733 -19.53002 -19.46314 -19.33792 -18.82234 -17.23498 -16.35608 -16.16289 -15.72648 -15.61034 -15.54236 -15.39993 -15.12569 -14.91939 -14.85145 -14.79407 -14.52950 -14.10389 -14.03122 -13.62205 -13.50406 -13.04617 -12.69126 -12.40614 -12.08431 -11.91259 -11.78355 -11.60292 -11.33076 -11.05937 -10.76922 -10.20790 -9.15426 -8.30112 -6.35057 -0.28598 0.14911 1.35651 1.38753 1.49180 1.50887 1.64658 2.36270 2.64330 2.71109 3.00429 3.05353 3.39826 3.57207 3.76078 4.02035 4.21036 4.24659 4.37550 4.47324 4.57852 4.67734 4.74261 4.92298 4.95218 5.16934 5.24486 5.38596 5.43040 5.44286 5.60446 5.67378 5.79420 5.85318 6.26848 6.72945 7.29788 8.86879 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.023478 B = 0.004353 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.334914 B = 6430.715284 C = 7076.737322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.537 4.537 8 H 0.031 0.969 9 C -0.005 4.005 10 C -0.080 4.080 11 C -0.093 4.093 12 C -0.173 4.173 13 C -0.008 4.008 14 C -0.134 4.134 15 C -0.077 4.077 16 C -0.124 4.124 17 C -0.075 4.075 18 C -0.203 4.203 19 C 0.506 3.494 20 F -0.175 7.175 21 F -0.184 7.184 22 F -0.186 7.186 23 H 0.267 0.733 24 H 0.017 0.983 25 H 0.029 0.971 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.138 0.862 29 H 0.105 0.895 30 H 0.146 0.854 31 H 0.165 0.835 32 H 0.167 0.833 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.543 -6.700 1.848 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.776 3.224 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.575 4.575 8 H 0.049 0.951 9 C -0.042 4.042 10 C -0.118 4.118 11 C -0.111 4.111 12 C -0.191 4.191 13 C -0.008 4.008 14 C -0.151 4.151 15 C -0.095 4.095 16 C -0.141 4.141 17 C -0.093 4.093 18 C -0.204 4.204 19 C 0.452 3.548 20 F -0.157 7.157 21 F -0.165 7.165 22 F -0.167 7.167 23 H 0.076 0.924 24 H 0.035 0.965 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.155 0.845 29 H 0.123 0.877 30 H 0.164 0.836 31 H 0.182 0.818 32 H 0.185 0.815 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 26.371 -6.629 1.889 27.257 hybrid contribution -0.978 0.289 0.481 1.127 sum 25.393 -6.340 2.370 26.279 Atomic orbital electron populations 1.70073 1.08411 1.28246 1.52575 1.26054 0.95636 1.03691 0.93967 0.85619 0.79408 0.77932 0.79476 1.18524 1.21096 1.17089 1.21524 0.92184 0.93182 1.50643 0.95106 1.19459 0.93710 0.94190 0.96880 1.20590 0.91612 0.98004 1.01554 1.23665 0.95663 0.94740 0.96983 1.21746 0.92069 1.04087 1.01182 1.18881 0.92734 0.95128 0.94077 1.21612 0.95507 0.99630 0.98375 1.21732 0.93298 0.96185 0.98284 1.21605 1.02020 0.96790 0.93715 1.21230 0.91006 0.97609 0.99438 1.20105 0.95877 1.06244 0.98196 1.18465 0.77402 0.77405 0.81522 1.93142 1.66456 1.84258 1.71821 1.93200 1.75088 1.64434 1.83785 1.93213 1.75075 1.68410 1.79998 0.92448 0.96513 0.95262 0.90971 0.93266 0.84492 0.87708 0.83595 0.81759 0.81502 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 2 C 0.00 0.19 5.47 84.66 0.46 0.65 16 3 Si 0.95 44.33 27.47 68.60 1.88 46.22 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 7 C -0.54 -31.53 9.66 25.60 0.25 -31.28 16 8 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 9 C -0.01 -0.24 4.02 29.85 0.12 -0.12 16 10 C -0.08 -3.18 5.60 29.85 0.17 -3.01 16 11 C -0.09 -2.90 8.94 24.53 0.22 -2.68 16 12 C -0.17 -5.26 8.42 23.66 0.20 -5.06 16 13 C -0.01 -0.20 5.84 -20.12 -0.12 -0.32 16 14 C -0.13 -2.62 9.40 22.52 0.21 -2.41 16 15 C -0.08 -1.05 10.03 22.23 0.22 -0.83 16 16 C -0.12 -1.56 10.04 22.32 0.22 -1.34 16 17 C -0.07 -1.29 9.42 22.23 0.21 -1.08 16 18 C -0.20 -4.82 5.40 -19.61 -0.11 -4.92 16 19 C 0.51 13.21 2.79 71.24 0.20 13.41 16 20 F -0.18 -4.05 15.98 44.97 0.72 -3.33 16 21 F -0.18 -5.22 16.00 44.97 0.72 -4.50 16 22 F -0.19 -5.51 16.00 44.97 0.72 -4.79 16 23 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 24 H 0.02 0.78 7.20 -2.38 -0.02 0.76 16 25 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 26 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 27 H 0.05 2.04 7.81 -2.39 -0.02 2.02 16 28 H 0.14 3.50 6.04 -2.91 -0.02 3.49 16 29 H 0.10 3.47 5.68 -2.91 -0.02 3.46 16 30 H 0.15 2.50 6.17 -2.91 -0.02 2.48 16 31 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 32 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 33 H 0.15 2.01 7.15 -2.91 -0.02 1.99 16 Total: -1.00 -69.28 293.37 7.68 -61.60 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.08 Total: 4.06 kcal Atomic # 6 Polarization: -41.24 SS G_CDS: 2.26 Total: -38.98 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.30 Total: -60.27 kcal Atomic # 9 Polarization: -14.79 SS G_CDS: 2.16 Total: -12.63 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.22 kcal Total: -69.28 7.68 -61.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060282.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.567 kcal (2) G-P(sol) polarization free energy of solvation -69.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds