Wall clock time and date at job start Mon Mar 30 2020 01:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34742 * 116.99990 * 2 1 4 4 O 1.21507 * 120.00158 * 0.02562 * 3 2 1 5 5 C 1.47403 * 120.00131 * 180.02562 * 3 2 1 6 6 C 1.39961 * 120.19579 * 89.72640 * 5 3 2 7 7 F 1.35091 * 120.09995 * 359.97438 * 6 5 3 8 8 C 1.38218 * 119.79713 * 179.72216 * 6 5 3 9 9 C 1.38311 * 120.19680 * 0.53430 * 8 6 5 10 10 C 1.50697 * 119.80210 * 179.74188 * 9 8 6 11 11 C 1.52995 * 109.47183 * 270.01881 * 10 9 8 12 12 C 1.50697 * 109.47187 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99922 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00202 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99590 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00299 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47055 * 90.00159 * 16 14 12 18 18 H 1.48504 * 109.47281 * 210.00371 * 16 14 12 19 19 H 1.48498 * 109.46858 * 330.00030 * 16 14 12 20 20 C 1.38306 * 120.39658 * 359.75994 * 9 8 6 21 21 C 1.38214 * 120.19998 * 359.95770 * 20 9 8 22 22 F 1.35098 * 120.10482 * 180.02562 * 21 20 9 23 23 H 1.09000 * 109.47070 * 300.00014 * 1 2 3 24 24 H 1.09001 * 109.46626 * 60.00031 * 1 2 3 25 25 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.89976 * 180.29329 * 8 6 5 27 27 H 1.09006 * 109.47080 * 30.01558 * 10 9 8 28 28 H 1.08998 * 109.46987 * 150.01570 * 10 9 8 29 29 H 1.09003 * 109.47433 * 300.00273 * 11 10 9 30 30 H 1.09010 * 109.47002 * 59.99783 * 11 10 9 31 31 H 0.97004 * 119.99716 * 179.97438 * 15 14 12 32 32 H 1.08005 * 119.90453 * 179.97438 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5358 1.2777 -0.0006 6 6 4.2386 1.3091 -1.2105 7 9 3.5699 1.2682 -2.3836 8 6 5.6185 1.3873 -1.2015 9 6 6.3054 1.4234 -0.0015 10 6 7.8103 1.5029 -0.0020 11 6 8.3956 0.0893 -0.0028 12 6 9.9005 0.1687 -0.0040 13 1 10.3904 1.1312 -0.0037 14 6 10.6519 -0.9873 -0.0043 15 7 10.0552 -2.1594 -0.0041 16 14 12.5173 -0.8889 -0.0050 17 1 13.0121 -0.8629 1.3948 18 1 13.0752 -2.0736 -0.7054 19 1 12.9473 0.3480 -0.7052 20 6 5.6194 1.3867 1.1989 21 6 4.2392 1.3144 1.2090 22 9 3.5711 1.2792 2.3826 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 6.1622 1.4164 -2.1342 27 1 8.1457 2.0355 -0.8920 28 1 8.1463 2.0348 0.8880 29 1 8.0602 -0.4434 0.8870 30 1 8.0594 -0.4426 -0.8930 31 1 10.5838 -2.9727 -0.0047 32 1 6.1638 1.4150 2.1312 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060767.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:25 Heat of formation + Delta-G solvation = -178.867115 kcal Electronic energy + Delta-G solvation = -19847.313999 eV Core-core repulsion = 16215.070214 eV Total energy + Delta-G solvation = -3632.243785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.34450 -50.32017 -41.71600 -40.11493 -37.74715 -35.93581 -34.12264 -31.61952 -31.43090 -28.88094 -27.33992 -24.79840 -24.20837 -22.88342 -21.96315 -19.54836 -18.87134 -18.82696 -18.41531 -18.24980 -17.24750 -17.17111 -16.91889 -16.60954 -16.48205 -16.18932 -15.42328 -14.83319 -14.83144 -14.40467 -14.36333 -13.85201 -13.69921 -13.34753 -13.21396 -13.08701 -12.79244 -12.65168 -12.40730 -11.99981 -11.96162 -11.73437 -11.60930 -11.19731 -10.50649 -10.05989 -9.98997 -8.15531 -6.25893 -0.51849 -0.22008 0.60700 1.40139 1.46161 1.46856 1.57204 2.09655 2.41303 2.46378 3.06559 3.19416 3.32327 3.53415 3.54986 4.01771 4.16909 4.23932 4.40873 4.42283 4.46393 4.59209 4.63586 4.84226 4.85976 4.97589 5.14422 5.21688 5.49322 5.57394 5.76840 5.88905 6.25782 6.27334 6.91710 7.43809 8.95803 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032647 B = 0.003902 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.448028 B = 7174.675195 C = 7321.568534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.354 6.354 3 C 0.526 3.474 4 O -0.510 6.510 5 C -0.212 4.212 6 C 0.166 3.834 7 F -0.126 7.126 8 C -0.154 4.154 9 C 0.016 3.984 10 C -0.072 4.072 11 C 0.030 3.970 12 C -0.539 4.539 13 H 0.068 0.932 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.960 3.040 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.261 1.261 20 C -0.154 4.154 21 C 0.166 3.834 22 F -0.126 7.126 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.139 0.861 26 H 0.169 0.831 27 H 0.086 0.914 28 H 0.086 0.914 29 H -0.002 1.002 30 H -0.002 1.002 31 H 0.262 0.738 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.310 6.067 0.004 15.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.270 6.270 3 C 0.369 3.631 4 O -0.398 6.398 5 C -0.215 4.215 6 C 0.146 3.854 7 F -0.104 7.104 8 C -0.172 4.172 9 C 0.015 3.985 10 C -0.109 4.109 11 C -0.007 4.007 12 C -0.577 4.577 13 H 0.086 0.914 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.785 3.215 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.185 1.185 20 C -0.172 4.172 21 C 0.146 3.854 22 F -0.104 7.104 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.157 0.843 26 H 0.186 0.814 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.071 0.929 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -14.592 6.173 0.000 15.844 hybrid contribution 0.291 -0.385 0.012 0.483 sum -14.301 5.788 0.012 15.427 Atomic orbital electron populations 1.23759 0.73406 1.06494 1.03221 1.86680 1.26142 1.31184 1.82958 1.20758 0.88369 0.82195 0.71784 1.90844 1.66827 1.36758 1.45401 1.18974 0.90710 1.17950 0.93894 1.17160 0.89913 0.99346 0.78999 1.91537 1.80689 1.93344 1.44826 1.21273 0.90645 1.04031 1.01270 1.20139 0.97551 0.89650 0.91112 1.20791 0.86705 0.99201 1.04171 1.18993 0.94535 0.91446 0.95729 1.21697 0.92827 0.92941 1.50248 0.91379 1.25907 1.03585 0.95192 0.94934 1.70097 1.37347 0.98085 1.51779 0.85520 0.79791 0.77853 0.78324 1.20054 1.21379 1.18498 1.21270 0.90643 1.04038 1.01264 1.17162 0.89915 0.99358 0.78985 1.91539 1.80717 1.93362 1.44783 0.91170 0.91178 0.84335 0.81372 0.89553 0.89542 0.98364 0.98356 0.92925 0.81370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.57 113.37 1.20 1.61 16 2 O -0.35 -9.53 10.58 -56.53 -0.60 -10.13 16 3 C 0.53 16.25 6.68 70.24 0.47 16.72 16 4 O -0.51 -17.33 16.90 19.81 0.33 -16.99 16 5 C -0.21 -6.47 5.76 -20.03 -0.12 -6.59 16 6 C 0.17 4.85 7.29 22.68 0.17 5.02 16 7 F -0.13 -3.66 16.83 44.97 0.76 -2.90 16 8 C -0.15 -4.32 9.65 22.28 0.22 -4.11 16 9 C 0.02 0.47 5.14 -19.83 -0.10 0.37 16 10 C -0.07 -2.41 5.27 29.85 0.16 -2.25 16 11 C 0.03 1.40 4.95 29.85 0.15 1.55 16 12 C -0.54 -27.94 9.11 25.60 0.23 -27.70 16 13 H 0.07 3.31 7.74 -2.91 -0.02 3.29 16 14 C 0.00 0.09 5.46 84.65 0.46 0.56 16 15 N -0.93 -54.25 13.29 21.45 0.28 -53.97 16 16 Si 0.96 41.92 29.54 68.60 2.03 43.95 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 18 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 20 C -0.15 -4.32 9.65 22.28 0.22 -4.10 16 21 C 0.17 4.85 7.29 22.68 0.17 5.01 16 22 F -0.13 -3.66 16.83 44.97 0.76 -2.90 16 23 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.17 4.15 8.06 -2.91 -0.02 4.13 16 27 H 0.09 2.68 8.08 -2.38 -0.02 2.66 16 28 H 0.09 2.68 8.08 -2.39 -0.02 2.66 16 29 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 31 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.17 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -63.62 301.14 7.92 -55.70 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: 1.15 Total: 1.15 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 3.21 Total: -13.91 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.28 Total: -53.97 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.26 Total: -27.12 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 1.51 Total: -5.80 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -63.62 7.92 -55.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060767.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.166 kcal (2) G-P(sol) polarization free energy of solvation -63.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds