Wall clock time and date at job start Mon Mar 30 2020 00:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37875 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99491 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00542 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 C 1.38315 * 119.79828 * 269.72278 * 12 11 10 14 14 C 1.38210 * 120.19376 * 179.76351 * 13 12 11 15 15 F 1.35101 * 120.09904 * 180.25108 * 14 13 12 16 16 C 1.39962 * 119.80214 * 0.48729 * 14 13 12 17 17 C 1.47406 * 120.19476 * 179.74176 * 16 14 13 18 18 O 1.21506 * 120.00494 * 270.02143 * 17 16 14 19 19 O 1.34751 * 119.99511 * 90.02505 * 17 16 14 20 20 C 1.39962 * 119.61043 * 359.76798 * 16 14 13 21 21 F 1.35091 * 120.10074 * 179.97438 * 20 16 14 22 22 C 1.38212 * 119.79795 * 359.97438 * 20 16 14 23 23 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47390 * 60.00123 * 9 7 2 25 25 H 1.09001 * 109.46948 * 299.99764 * 9 7 2 26 26 H 1.09001 * 109.47502 * 60.00161 * 10 9 7 27 27 H 1.09001 * 109.47289 * 299.99957 * 10 9 7 28 28 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 29 29 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 30 30 H 1.08002 * 119.90406 * 0.02562 * 13 12 11 31 31 H 0.96705 * 116.99411 * 179.97438 * 19 17 16 32 32 H 1.08003 * 119.90234 * 180.02562 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4593 -6.1326 -0.0005 13 6 2.9024 -6.6588 -1.2005 14 6 3.8042 -7.7061 -1.2095 15 9 4.2396 -8.2152 -2.3827 16 6 4.2611 -8.2410 0.0005 17 6 5.2186 -9.3618 0.0010 18 8 4.8132 -10.5072 0.0009 19 8 6.5435 -9.1160 0.0017 20 6 3.8033 -7.7057 1.2099 21 9 4.2375 -8.2147 2.3836 22 6 2.9056 -6.6549 1.1999 23 1 -0.4850 0.8400 0.0004 24 1 0.6239 -2.5568 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8718 -3.6044 0.8895 27 1 2.8718 -3.6044 -0.8905 28 1 0.8531 -5.0451 0.8886 29 1 0.8537 -5.0446 -0.8913 30 1 2.5459 -6.2472 -2.1332 31 1 7.1322 -9.8831 0.0024 32 1 2.5515 -6.2403 2.1322 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066189.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:56 Heat of formation + Delta-G solvation = -176.975271 kcal Electronic energy + Delta-G solvation = -19530.153602 eV Core-core repulsion = 15897.991853 eV Total energy + Delta-G solvation = -3632.161749 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.37803 -49.35442 -40.53545 -39.12029 -36.41538 -34.91882 -32.85743 -30.92542 -30.69564 -27.65934 -24.80594 -23.27766 -22.91432 -21.46693 -20.27214 -18.73528 -17.98797 -17.82350 -17.52147 -16.28715 -16.25137 -16.11435 -15.63704 -15.38057 -15.23700 -14.59756 -14.34311 -14.12132 -13.65213 -13.04460 -12.91849 -12.52073 -12.25801 -11.96044 -11.87197 -11.68606 -11.39992 -11.07492 -10.84388 -10.80497 -10.58484 -9.82497 -9.58789 -9.26160 -9.06515 -8.94775 -8.40032 -6.05367 -4.08156 0.43767 0.69930 1.64456 2.55398 3.03017 3.30403 3.35194 3.36634 3.37712 4.00891 4.35073 4.43192 4.45647 4.72614 4.89415 5.30633 5.35685 5.36010 5.39447 5.54344 5.75056 5.80659 6.02274 6.09546 6.11256 6.42908 6.57875 6.69458 6.98083 7.44013 7.59499 7.71866 7.93600 8.35509 8.98626 9.56529 11.05807 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031190 B = 0.003469 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.510239 B = 8068.471670 C = 8175.295712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.105 4.105 11 C -0.092 4.092 12 C 0.019 3.981 13 C -0.162 4.162 14 C 0.172 3.828 15 F -0.123 7.123 16 C -0.201 4.201 17 C 0.543 3.457 18 O -0.493 6.493 19 O -0.501 6.501 20 C 0.172 3.828 21 F -0.123 7.123 22 C -0.161 4.161 23 H 0.262 0.738 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.415 0.585 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.002 -16.743 0.001 18.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.143 4.143 11 C -0.129 4.129 12 C 0.019 3.981 13 C -0.180 4.180 14 C 0.152 3.848 15 F -0.102 7.102 16 C -0.204 4.204 17 C 0.384 3.616 18 O -0.380 6.380 19 O -0.313 6.313 20 C 0.152 3.848 21 F -0.102 7.102 22 C -0.180 4.180 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.173 0.827 31 H 0.274 0.726 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.513 -16.652 0.001 18.268 hybrid contribution 1.081 0.197 0.001 1.099 sum 8.594 -16.454 0.002 18.563 Atomic orbital electron populations 1.69945 1.06057 1.26812 1.50643 1.25014 0.94845 0.99271 0.95230 0.86661 0.79602 0.83103 0.78669 1.20212 1.21273 1.20218 1.21202 0.93038 0.91044 1.50913 0.92704 1.19114 0.93910 0.91128 0.97447 1.21691 0.99205 0.92322 1.01065 1.21025 0.95876 0.91963 1.04058 1.20147 0.93652 0.93706 0.90633 1.21143 0.99321 0.96788 1.00774 1.17156 0.95120 0.93323 0.79179 1.91562 1.87944 1.85881 1.44774 1.18774 1.05367 1.02863 0.93440 1.20352 0.81597 0.87903 0.71750 1.90937 1.79814 1.22865 1.44372 1.84697 1.17542 1.43988 1.85070 1.17153 0.95154 0.93298 0.79170 1.91559 1.87975 1.85890 1.44732 1.21141 0.99383 0.96728 1.00771 0.92886 0.96398 0.96407 0.92834 0.92843 0.90005 0.89998 0.82704 0.72570 0.82703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 10 C -0.11 -1.89 5.14 -26.73 -0.14 -2.03 16 11 C -0.09 -1.26 5.34 -27.88 -0.15 -1.41 16 12 C 0.02 0.23 5.14 -104.57 -0.54 -0.31 16 13 C -0.16 -1.89 9.65 -39.56 -0.38 -2.27 16 14 C 0.17 2.15 7.29 -38.95 -0.28 1.86 16 15 F -0.12 -1.57 16.83 2.25 0.04 -1.53 16 16 C -0.20 -2.61 5.76 -104.87 -0.60 -3.22 16 17 C 0.54 7.00 7.06 34.46 0.24 7.24 16 18 O -0.49 -7.44 17.89 -19.27 -0.34 -7.79 16 19 O -0.50 -4.95 13.44 -40.63 -0.55 -5.49 16 20 C 0.17 2.15 7.29 -38.95 -0.28 1.86 16 21 F -0.12 -1.57 16.83 2.25 0.04 -1.53 16 22 C -0.16 -1.89 9.65 -39.56 -0.38 -2.27 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 29 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 30 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.42 1.91 9.11 45.56 0.42 2.33 16 32 H 0.16 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 301.00 15.07 4.54 4.54 Total: -1.00 -31.59 301.00 -6.13 -37.72 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -2.50 Total: -3.46 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -3.07 Total: -13.18 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.74 Total: -25.35 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.89 Total: -13.28 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.08 Total: -3.06 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.59 -6.13 -37.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066189.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.251 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds