Wall clock time and date at job start Mon Mar 30 2020 00:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37875 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99491 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00542 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 C 1.38315 * 119.79828 * 269.72278 * 12 11 10 14 14 C 1.38210 * 120.19376 * 179.76351 * 13 12 11 15 15 F 1.35101 * 120.09904 * 180.25108 * 14 13 12 16 16 C 1.39962 * 119.80214 * 0.48729 * 14 13 12 17 17 C 1.47406 * 120.19476 * 179.74176 * 16 14 13 18 18 O 1.21506 * 120.00494 * 270.02143 * 17 16 14 19 19 O 1.34751 * 119.99511 * 90.02505 * 17 16 14 20 20 C 1.39962 * 119.61043 * 359.76798 * 16 14 13 21 21 F 1.35091 * 120.10074 * 179.97438 * 20 16 14 22 22 C 1.38212 * 119.79795 * 359.97438 * 20 16 14 23 23 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47390 * 60.00123 * 9 7 2 25 25 H 1.09001 * 109.46948 * 299.99764 * 9 7 2 26 26 H 1.09001 * 109.47502 * 60.00161 * 10 9 7 27 27 H 1.09001 * 109.47289 * 299.99957 * 10 9 7 28 28 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 29 29 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 30 30 H 1.08002 * 119.90406 * 0.02562 * 13 12 11 31 31 H 0.96705 * 116.99411 * 179.97438 * 19 17 16 32 32 H 1.08003 * 119.90234 * 180.02562 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4593 -6.1326 -0.0005 13 6 2.9024 -6.6588 -1.2005 14 6 3.8042 -7.7061 -1.2095 15 9 4.2396 -8.2152 -2.3827 16 6 4.2611 -8.2410 0.0005 17 6 5.2186 -9.3618 0.0010 18 8 4.8132 -10.5072 0.0009 19 8 6.5435 -9.1160 0.0017 20 6 3.8033 -7.7057 1.2099 21 9 4.2375 -8.2147 2.3836 22 6 2.9056 -6.6549 1.1999 23 1 -0.4850 0.8400 0.0004 24 1 0.6239 -2.5568 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 2.8718 -3.6044 0.8895 27 1 2.8718 -3.6044 -0.8905 28 1 0.8531 -5.0451 0.8886 29 1 0.8537 -5.0446 -0.8913 30 1 2.5459 -6.2472 -2.1332 31 1 7.1322 -9.8831 0.0024 32 1 2.5515 -6.2403 2.1322 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066189.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:56 Heat of formation + Delta-G solvation = -195.166979 kcal Electronic energy + Delta-G solvation = -19530.942454 eV Core-core repulsion = 15897.991853 eV Total energy + Delta-G solvation = -3632.950600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.34271 -50.31858 -41.49546 -40.09800 -37.33569 -36.40519 -34.58094 -32.36752 -31.63283 -29.15814 -26.30883 -24.23896 -24.22036 -22.61162 -21.74985 -19.66537 -19.01558 -18.79418 -18.53828 -18.23705 -17.21886 -17.09094 -16.60564 -16.51063 -16.33418 -16.15402 -15.50618 -15.39836 -14.73531 -14.34458 -14.11930 -14.09947 -13.17673 -13.16176 -13.15919 -13.01404 -12.80731 -12.50782 -12.40384 -12.37233 -12.02364 -11.40373 -11.29843 -11.17147 -10.49425 -10.10439 -9.99948 -8.15920 -6.25628 -0.53557 -0.23226 0.66426 1.43762 1.45228 1.53091 1.69018 2.07702 2.41029 2.44837 3.06002 3.18062 3.37101 3.52833 3.87404 3.98640 4.28870 4.35770 4.42085 4.50473 4.60892 4.75999 4.89018 4.95052 5.21736 5.27170 5.31727 5.33287 5.47733 5.59941 5.84461 5.93762 6.31166 6.65603 6.92513 7.43557 8.95198 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031190 B = 0.003469 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.510239 B = 8068.471670 C = 8175.295712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.021 3.979 10 C -0.094 4.094 11 C -0.081 4.081 12 C 0.016 3.984 13 C -0.152 4.152 14 C 0.165 3.835 15 F -0.126 7.126 16 C -0.210 4.210 17 C 0.546 3.454 18 O -0.522 6.522 19 O -0.495 6.495 20 C 0.165 3.835 21 F -0.126 7.126 22 C -0.152 4.152 23 H 0.262 0.738 24 H -0.003 1.003 25 H -0.003 1.003 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.172 0.828 31 H 0.437 0.563 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.099 -16.776 0.001 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.016 4.016 10 C -0.131 4.131 11 C -0.118 4.118 12 C 0.015 3.985 13 C -0.170 4.170 14 C 0.145 3.855 15 F -0.105 7.105 16 C -0.213 4.213 17 C 0.388 3.612 18 O -0.412 6.412 19 O -0.309 6.309 20 C 0.145 3.855 21 F -0.104 7.104 22 C -0.170 4.170 23 H 0.071 0.929 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.189 0.811 31 H 0.300 0.700 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.651 -16.698 0.000 18.805 hybrid contribution 0.783 0.175 0.001 0.802 sum 9.434 -16.523 0.001 19.027 Atomic orbital electron populations 1.70069 1.07625 1.27687 1.51885 1.25895 0.95689 1.03061 0.94983 0.85616 0.78362 0.78676 0.79104 1.19322 1.21093 1.19331 1.21726 0.93573 0.92645 1.50182 0.92326 1.19045 0.94498 0.92645 0.95393 1.21448 0.98015 0.92406 1.01248 1.20809 0.95813 0.90196 1.04996 1.19925 0.93779 0.93696 0.91066 1.21303 0.98345 0.96037 1.01345 1.17190 0.95600 0.93746 0.78976 1.91554 1.88043 1.85988 1.44869 1.18980 1.05585 1.02868 0.93900 1.20381 0.82403 0.87390 0.71034 1.90926 1.80437 1.23820 1.45970 1.84652 1.16628 1.45427 1.84226 1.17186 0.95634 0.93719 0.78967 1.91551 1.88074 1.85997 1.44827 1.21301 0.98405 0.95984 1.01341 0.92877 0.98423 0.98433 0.92632 0.92645 0.89211 0.89202 0.81088 0.69954 0.81094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.85 13.29 21.45 0.28 -54.57 16 2 C 0.00 0.08 5.46 84.65 0.46 0.55 16 3 Si 0.96 42.92 29.54 68.60 2.03 44.95 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.54 -29.38 9.11 25.60 0.23 -29.14 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.02 1.02 4.97 29.85 0.15 1.17 16 10 C -0.09 -3.25 5.14 30.60 0.16 -3.09 16 11 C -0.08 -2.08 5.34 29.85 0.16 -1.92 16 12 C 0.02 0.35 5.14 -19.83 -0.10 0.25 16 13 C -0.15 -3.22 9.65 22.28 0.22 -3.01 16 14 C 0.16 3.85 7.29 22.68 0.17 4.01 16 15 F -0.13 -3.04 16.83 44.97 0.76 -2.28 16 16 C -0.21 -5.17 5.76 -20.03 -0.12 -5.29 16 17 C 0.55 13.44 7.06 70.24 0.50 13.93 16 18 O -0.52 -15.39 17.89 19.82 0.35 -15.04 16 19 O -0.50 -8.92 13.44 -56.61 -0.76 -9.68 16 20 C 0.16 3.85 7.29 22.68 0.17 4.01 16 21 F -0.13 -3.04 16.83 44.97 0.76 -2.28 16 22 C -0.15 -3.22 9.65 22.28 0.22 -3.01 16 23 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 24 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.09 2.17 8.08 -2.39 -0.02 2.15 16 29 H 0.09 2.17 8.08 -2.39 -0.02 2.16 16 30 H 0.17 3.03 8.06 -2.91 -0.02 3.00 16 31 H 0.44 3.18 9.11 -74.05 -0.67 2.51 16 32 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -67.07 301.00 6.11 -60.96 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: 0.49 Total: -0.52 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 2.20 Total: -21.54 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.28 Total: -54.57 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.41 Total: -24.71 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 1.51 Total: -4.56 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -67.07 6.11 -60.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066189.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.209 kcal (2) G-P(sol) polarization free energy of solvation -67.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds