Wall clock time and date at job start Mon Mar 30 2020 00:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00386 * 2 1 4 4 H 1.48500 * 109.47427 * 240.00217 * 3 2 1 5 5 H 1.48504 * 109.46923 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47066 * 119.99920 * 3 2 1 7 7 C 1.37878 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99767 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46916 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46928 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.46866 * 180.02562 * 11 10 9 13 13 C 1.38543 * 119.87300 * 90.00064 * 12 11 10 14 14 F 1.35106 * 119.93268 * 0.02698 * 13 12 11 15 15 C 1.38183 * 120.12788 * 179.97438 * 13 12 11 16 16 C 1.39598 * 119.87573 * 0.02562 * 15 13 12 17 17 C 1.47733 * 120.12869 * 180.02562 * 16 15 13 18 18 O 1.21468 * 120.00425 * 0.02562 * 17 16 15 19 19 O 1.34711 * 120.00241 * 180.02562 * 17 16 15 20 20 C 1.39604 * 119.74695 * 0.27604 * 16 15 13 21 21 C 1.38196 * 119.86744 * 359.42325 * 20 16 15 22 22 F 1.35095 * 119.93696 * 180.29833 * 21 20 16 23 23 H 0.97001 * 119.99340 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47294 * 60.00565 * 9 7 2 25 25 H 1.08994 * 109.47517 * 300.00422 * 9 7 2 26 26 H 1.08998 * 109.46734 * 60.00686 * 10 9 7 27 27 H 1.08998 * 109.47353 * 299.99770 * 10 9 7 28 28 H 1.09002 * 109.46658 * 60.00278 * 11 10 9 29 29 H 1.09003 * 109.47293 * 300.00167 * 11 10 9 30 30 H 1.08008 * 120.06144 * 180.02562 * 15 13 12 31 31 H 0.96700 * 117.00324 * 180.02562 * 19 17 16 32 32 H 1.07997 * 120.06905 * 179.72119 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4800 -4.9871 -0.0025 12 6 2.4592 -6.1326 -0.0031 13 6 2.9076 -6.6577 1.1980 14 9 2.4657 -6.1422 2.3660 15 6 3.8051 -7.7084 1.2035 16 6 4.2604 -8.2404 -0.0041 17 6 5.2195 -9.3641 -0.0047 18 8 5.6132 -9.8272 1.0470 19 8 5.6576 -9.8752 -1.1716 20 6 3.8100 -7.7031 -1.2113 21 6 2.9076 -6.6565 -1.2047 22 9 2.4662 -6.1394 -2.3721 23 1 -0.4849 0.8401 -0.0004 24 1 0.6239 -2.5567 -0.8904 25 1 0.6245 -2.5570 0.8896 26 1 2.8723 -3.6048 0.8878 27 1 2.8711 -3.6041 -0.8923 28 1 0.8530 -5.0441 -0.8923 29 1 0.8537 -5.0455 0.8877 30 1 4.1537 -8.1173 2.1405 31 1 6.2842 -10.6100 -1.1214 32 1 4.1623 -8.1077 -2.1486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066526.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:36 Heat of formation + Delta-G solvation = -176.807792 kcal Electronic energy + Delta-G solvation = -19676.858361 eV Core-core repulsion = 16044.703875 eV Total energy + Delta-G solvation = -3632.154486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.04932 -49.04397 -40.72330 -38.77166 -36.48646 -35.05095 -32.84821 -30.80969 -30.62537 -27.56193 -24.90737 -23.22935 -22.79434 -21.35504 -20.21632 -18.90857 -18.18673 -17.31474 -16.50940 -16.32665 -16.26428 -15.79553 -15.70747 -15.51301 -15.32690 -14.51929 -14.24605 -14.00494 -13.72783 -12.92209 -12.61828 -12.44675 -12.24532 -12.13506 -11.81537 -11.69683 -11.32609 -11.07345 -10.81607 -10.79983 -10.53726 -9.76110 -9.53751 -9.20634 -9.03346 -8.84419 -8.35020 -6.00210 -4.02739 0.14764 0.71601 2.06279 2.49372 3.15845 3.33864 3.38026 3.40722 3.74460 4.05495 4.41939 4.44619 4.48249 4.65534 4.75028 5.20966 5.35504 5.40761 5.57649 5.67911 5.71559 5.83519 5.88789 6.04573 6.15618 6.48001 6.60114 6.74638 7.04160 7.46820 7.65249 7.78680 7.98917 8.41077 9.03619 9.61275 11.11126 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.029990 B = 0.003781 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.434437 B = 7403.889264 C = 7601.799058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.102 4.102 11 C -0.092 4.092 12 C -0.097 4.097 13 C 0.120 3.880 14 F -0.118 7.118 15 C -0.098 4.098 16 C -0.090 4.090 17 C 0.536 3.464 18 O -0.508 6.508 19 O -0.509 6.509 20 C -0.104 4.104 21 C 0.117 3.883 22 F -0.119 7.119 23 H 0.261 0.739 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.156 0.844 31 H 0.417 0.583 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.082 -19.806 -1.957 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.140 4.140 11 C -0.129 4.129 12 C -0.099 4.099 13 C 0.100 3.900 14 F -0.096 7.096 15 C -0.117 4.117 16 C -0.092 4.092 17 C 0.379 3.621 18 O -0.397 6.397 19 O -0.321 6.321 20 C -0.124 4.124 21 C 0.098 3.902 22 F -0.097 7.097 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.173 0.827 31 H 0.277 0.723 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.718 -19.442 -1.695 20.987 hybrid contribution 0.720 0.641 0.034 0.965 sum 8.438 -18.801 -1.661 20.674 Atomic orbital electron populations 1.69954 1.06052 1.26743 1.50731 1.25016 0.94857 0.99247 0.95277 0.86651 0.79589 0.83086 0.78639 1.20223 1.21261 1.20227 1.21194 0.93010 0.91026 1.50788 0.92739 1.19097 0.93874 0.91018 0.97437 1.21650 0.99229 0.92319 1.00768 1.20888 0.95954 0.91782 1.04271 1.20638 0.99802 0.98632 0.90852 1.16881 0.97038 0.94671 0.81370 1.91583 1.87606 1.85660 1.44748 1.21173 0.96204 0.95177 0.99173 1.18339 1.00320 0.97315 0.93198 1.20526 0.78931 0.81470 0.81126 1.90916 1.56056 1.59788 1.32906 1.84548 1.60973 1.51781 1.34757 1.21413 0.96256 0.95317 0.99371 1.16995 0.97068 0.94838 0.81323 1.91576 1.87678 1.85662 1.44795 0.92918 0.96381 0.96371 0.92990 0.92994 0.89835 0.89852 0.82660 0.72343 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 10 C -0.10 -2.09 5.14 -26.72 -0.14 -2.23 16 11 C -0.09 -1.53 4.98 -27.88 -0.14 -1.67 16 12 C -0.10 -1.39 5.15 -104.40 -0.54 -1.93 16 13 C 0.12 1.60 7.23 -39.49 -0.29 1.32 16 14 F -0.12 -1.72 16.46 2.25 0.04 -1.68 16 15 C -0.10 -1.12 9.57 -39.09 -0.37 -1.50 16 16 C -0.09 -0.96 5.87 -105.00 -0.62 -1.58 16 17 C 0.54 5.28 8.27 34.61 0.29 5.56 16 18 O -0.51 -6.28 17.13 -19.24 -0.33 -6.61 16 19 O -0.51 -3.38 12.68 -40.52 -0.51 -3.90 16 20 C -0.10 -1.10 9.59 -39.09 -0.37 -1.47 16 21 C 0.12 1.52 7.23 -39.49 -0.29 1.23 16 22 F -0.12 -1.68 16.46 2.25 0.04 -1.64 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.08 1.37 7.63 -51.93 -0.40 0.97 16 29 H 0.08 1.37 7.62 -51.93 -0.40 0.98 16 30 H 0.16 1.61 7.65 -52.48 -0.40 1.21 16 31 H 0.42 0.84 9.11 45.56 0.42 1.26 16 32 H 0.16 1.30 7.61 -52.49 -0.40 0.90 16 LS Contribution 297.68 15.07 4.49 4.49 Total: -1.00 -32.34 297.68 -5.99 -38.33 By element: Atomic # 1 Polarization: -1.63 SS G_CDS: -2.41 Total: -4.04 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -3.01 Total: -15.44 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.25 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.84 Total: -10.50 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.07 Total: -3.32 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.34 -5.99 -38.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066526.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.480 kcal (2) G-P(sol) polarization free energy of solvation -32.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds