Wall clock time and date at job start Mon Mar 30 2020 00:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00386 * 2 1 4 4 H 1.48500 * 109.47427 * 240.00217 * 3 2 1 5 5 H 1.48504 * 109.46923 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47066 * 119.99920 * 3 2 1 7 7 C 1.37878 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99767 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46916 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46928 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.46866 * 180.02562 * 11 10 9 13 13 C 1.38543 * 119.87300 * 90.00064 * 12 11 10 14 14 F 1.35106 * 119.93268 * 0.02698 * 13 12 11 15 15 C 1.38183 * 120.12788 * 179.97438 * 13 12 11 16 16 C 1.39598 * 119.87573 * 0.02562 * 15 13 12 17 17 C 1.47733 * 120.12869 * 180.02562 * 16 15 13 18 18 O 1.21468 * 120.00425 * 0.02562 * 17 16 15 19 19 O 1.34711 * 120.00241 * 180.02562 * 17 16 15 20 20 C 1.39604 * 119.74695 * 0.27604 * 16 15 13 21 21 C 1.38196 * 119.86744 * 359.42325 * 20 16 15 22 22 F 1.35095 * 119.93696 * 180.29833 * 21 20 16 23 23 H 0.97001 * 119.99340 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47294 * 60.00565 * 9 7 2 25 25 H 1.08994 * 109.47517 * 300.00422 * 9 7 2 26 26 H 1.08998 * 109.46734 * 60.00686 * 10 9 7 27 27 H 1.08998 * 109.47353 * 299.99770 * 10 9 7 28 28 H 1.09002 * 109.46658 * 60.00278 * 11 10 9 29 29 H 1.09003 * 109.47293 * 300.00167 * 11 10 9 30 30 H 1.08008 * 120.06144 * 180.02562 * 15 13 12 31 31 H 0.96700 * 117.00324 * 180.02562 * 19 17 16 32 32 H 1.07997 * 120.06905 * 179.72119 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4800 -4.9871 -0.0025 12 6 2.4592 -6.1326 -0.0031 13 6 2.9076 -6.6577 1.1980 14 9 2.4657 -6.1422 2.3660 15 6 3.8051 -7.7084 1.2035 16 6 4.2604 -8.2404 -0.0041 17 6 5.2195 -9.3641 -0.0047 18 8 5.6132 -9.8272 1.0470 19 8 5.6576 -9.8752 -1.1716 20 6 3.8100 -7.7031 -1.2113 21 6 2.9076 -6.6565 -1.2047 22 9 2.4662 -6.1394 -2.3721 23 1 -0.4849 0.8401 -0.0004 24 1 0.6239 -2.5567 -0.8904 25 1 0.6245 -2.5570 0.8896 26 1 2.8723 -3.6048 0.8878 27 1 2.8711 -3.6041 -0.8923 28 1 0.8530 -5.0441 -0.8923 29 1 0.8537 -5.0455 0.8877 30 1 4.1537 -8.1173 2.1405 31 1 6.2842 -10.6100 -1.1214 32 1 4.1623 -8.1077 -2.1486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066526.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:35 Heat of formation + Delta-G solvation = -196.051527 kcal Electronic energy + Delta-G solvation = -19677.692832 eV Core-core repulsion = 16044.703875 eV Total energy + Delta-G solvation = -3632.988957 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.12872 -50.09972 -41.51054 -39.72086 -37.17617 -36.65017 -34.71187 -32.34225 -31.58510 -29.12662 -26.41097 -24.37693 -24.03005 -22.49646 -21.84632 -19.75337 -19.04981 -18.50667 -18.27177 -17.35271 -17.24085 -16.74444 -16.68170 -16.58212 -16.42696 -16.40272 -15.65555 -15.38389 -14.61204 -14.38839 -14.06351 -13.85153 -13.47305 -13.21044 -13.10908 -12.94376 -12.67650 -12.56533 -12.50143 -12.39455 -11.90442 -11.57335 -11.40578 -11.25943 -10.55936 -10.06854 -9.98198 -8.20829 -6.32241 -0.78833 -0.23101 1.20520 1.39725 1.42878 1.50844 1.78371 2.24884 2.40802 2.76855 3.09806 3.12277 3.35693 3.46481 3.78801 3.87448 4.18566 4.30622 4.33659 4.53882 4.59938 4.72627 4.76475 4.83692 5.02748 5.08499 5.15829 5.45581 5.48823 5.50173 5.70079 5.82910 6.22857 6.83774 6.89390 7.36919 8.90845 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.029990 B = 0.003781 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.434437 B = 7403.889264 C = 7601.799058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.088 4.088 11 C -0.083 4.083 12 C -0.114 4.114 13 C 0.111 3.889 14 F -0.130 7.130 15 C -0.090 4.090 16 C -0.085 4.085 17 C 0.547 3.453 18 O -0.534 6.534 19 O -0.496 6.496 20 C -0.083 4.083 21 C 0.110 3.890 22 F -0.128 7.128 23 H 0.264 0.736 24 H -0.004 1.004 25 H -0.006 1.006 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.167 0.833 31 H 0.440 0.560 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.066 -20.883 -2.621 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.126 4.126 11 C -0.120 4.120 12 C -0.116 4.116 13 C 0.091 3.909 14 F -0.108 7.108 15 C -0.109 4.109 16 C -0.086 4.086 17 C 0.391 3.609 18 O -0.426 6.426 19 O -0.311 6.311 20 C -0.101 4.101 21 C 0.091 3.909 22 F -0.106 7.106 23 H 0.073 0.927 24 H 0.014 0.986 25 H 0.013 0.987 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.184 0.816 31 H 0.303 0.697 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 9.725 -20.550 -2.378 22.859 hybrid contribution 0.131 0.869 0.195 0.900 sum 9.856 -19.682 -2.183 22.120 Atomic orbital electron populations 1.70087 1.07780 1.27902 1.51495 1.25979 0.95792 1.03356 0.94627 0.85506 0.78312 0.78068 0.79208 1.19094 1.20689 1.19222 1.21659 0.93525 0.92437 1.50858 0.92303 1.18999 0.94327 0.92746 0.95127 1.21381 0.98065 0.92517 1.00616 1.20607 0.96223 0.91105 1.04104 1.20391 1.00389 0.98757 0.92048 1.16973 0.97811 0.95450 0.80645 1.91551 1.87915 1.86008 1.45355 1.21278 0.95187 0.94181 1.00230 1.18499 0.99955 0.97303 0.92841 1.20225 0.78331 0.80886 0.81420 1.90924 1.56990 1.60566 1.34070 1.84494 1.61257 1.52538 1.32776 1.21609 0.94426 0.93634 1.00468 1.17108 0.97769 0.95612 0.80458 1.91555 1.87942 1.85972 1.45162 0.92692 0.98603 0.98743 0.93160 0.92910 0.89937 0.90225 0.81569 0.69676 0.79812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.55 -31.71 9.11 25.60 0.23 -31.47 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.09 -3.70 5.14 30.60 0.16 -3.54 16 11 C -0.08 -2.85 4.98 29.85 0.15 -2.70 16 12 C -0.11 -3.21 5.15 -19.72 -0.10 -3.31 16 13 C 0.11 2.88 7.23 22.33 0.16 3.05 16 14 F -0.13 -3.82 16.46 44.97 0.74 -3.08 16 15 C -0.09 -1.90 9.57 22.59 0.22 -1.68 16 16 C -0.08 -1.57 5.87 -20.11 -0.12 -1.69 16 17 C 0.55 9.03 8.27 70.33 0.58 9.61 16 18 O -0.53 -11.85 17.13 19.94 0.34 -11.51 16 19 O -0.50 -4.59 12.68 -56.21 -0.71 -5.30 16 20 C -0.08 -1.49 9.59 22.59 0.22 -1.28 16 21 C 0.11 2.68 7.23 22.33 0.16 2.85 16 22 F -0.13 -3.48 16.46 44.97 0.74 -2.74 16 23 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 24 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 25 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.79 7.63 -2.39 -0.02 2.77 16 29 H 0.08 2.73 7.62 -2.39 -0.02 2.71 16 30 H 0.17 3.16 7.65 -2.91 -0.02 3.14 16 31 H 0.44 -0.02 9.11 -74.06 -0.67 -0.70 16 32 H 0.18 2.29 7.61 -2.91 -0.02 2.27 16 Total: -1.00 -70.11 297.68 6.18 -63.93 By element: Atomic # 1 Polarization: -3.25 SS G_CDS: 0.49 Total: -2.75 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 2.27 Total: -28.20 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.28 Total: -57.06 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.37 Total: -16.81 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 1.48 Total: -5.81 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -70.11 6.18 -63.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066526.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.121 kcal (2) G-P(sol) polarization free energy of solvation -70.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds