Wall clock time and date at job start Mon Mar 30 2020 01:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47175 * 2 1 4 4 C 1.35698 * 116.99959 * 180.02562 * 3 2 1 5 5 C 1.38918 * 119.66841 * 180.25363 * 4 3 2 6 6 C 1.38383 * 119.12151 * 180.24734 * 5 4 3 7 7 C 1.50697 * 120.76229 * 179.77431 * 6 5 4 8 8 N 1.46501 * 109.46815 * 104.71752 * 7 6 5 9 9 C 1.46494 * 120.00435 * 270.27772 * 8 7 6 10 10 C 1.36938 * 119.99340 * 90.00112 * 8 7 6 11 11 H 1.08000 * 120.00479 * 355.22823 * 10 8 7 12 12 C 1.38819 * 119.99343 * 175.22354 * 10 8 7 13 13 N 1.31615 * 120.00338 * 335.02141 * 12 10 8 14 14 Si 1.86803 * 119.99584 * 155.02877 * 12 10 8 15 15 H 1.48498 * 109.47564 * 84.85436 * 14 12 10 16 16 H 1.48504 * 109.46895 * 204.85657 * 14 12 10 17 17 H 1.48504 * 109.47200 * 324.85433 * 14 12 10 18 18 C 1.38921 * 118.47158 * 359.50301 * 6 5 4 19 19 Cl 1.73604 * 120.36418 * 180.27118 * 18 6 5 20 20 C 1.38154 * 119.26808 * 0.25090 * 18 6 5 21 21 N 1.31975 * 120.81497 * 0.02562 * 20 18 6 22 22 H 1.08995 * 109.47177 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47160 * 300.00609 * 1 2 3 24 24 H 1.08997 * 109.46980 * 59.99832 * 1 2 3 25 25 H 1.08996 * 109.46769 * 239.99543 * 2 1 3 26 26 H 1.09002 * 109.46759 * 119.99763 * 2 1 3 27 27 H 1.07996 * 120.43852 * 0.02562 * 5 4 3 28 28 H 1.09000 * 109.47166 * 344.72149 * 7 6 5 29 29 H 1.08997 * 109.47366 * 224.72305 * 7 6 5 30 30 H 1.09002 * 109.46975 * 264.28117 * 9 8 7 31 31 H 1.09001 * 109.46999 * 24.27817 * 9 8 7 32 32 H 1.08998 * 109.47274 * 144.28241 * 9 8 7 33 33 H 0.96999 * 119.99991 * 179.97438 * 13 12 10 34 34 H 1.08003 * 119.59218 * 180.02562 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3516 1.5250 -0.0005 5 6 3.8752 2.8117 0.0048 6 6 5.2487 2.9799 -0.0011 7 6 5.8564 4.3590 -0.0007 8 7 6.3804 4.6613 1.3336 9 6 5.5193 5.3009 2.3312 10 6 7.6736 4.3407 1.6499 11 1 8.2833 3.7964 0.9439 12 6 8.2009 4.7154 2.8782 13 7 7.7006 5.7489 3.5215 14 14 9.6207 3.7529 3.6179 15 1 10.9032 4.2619 3.0689 16 1 9.6142 3.9169 5.0938 17 1 9.4734 2.3145 3.2791 18 6 6.0545 1.8483 -0.0015 19 17 7.7837 2.0023 -0.0016 20 6 5.4646 0.5991 -0.0014 21 7 4.1510 0.4717 -0.0014 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.2189 3.6694 0.0097 28 1 5.0945 5.0918 -0.2664 29 1 6.6678 4.3987 -0.7274 30 1 5.6864 6.3780 2.3184 31 1 4.4753 5.0925 2.0972 32 1 5.7554 4.9084 3.3203 33 1 8.0688 6.0105 4.3799 34 1 6.0861 -0.2842 -0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250316858.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:06 Heat of formation + Delta-G solvation = 22.256432 kcal Electronic energy + Delta-G solvation = -18602.069665 eV Core-core repulsion = 15562.636683 eV Total energy + Delta-G solvation = -3039.432982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40172 -38.07654 -35.99295 -35.61585 -32.80934 -31.99540 -30.60931 -29.44261 -26.69253 -25.79377 -23.65444 -23.07586 -21.99976 -20.56584 -17.87335 -16.93378 -16.55612 -16.21884 -16.03216 -15.03350 -14.51638 -14.04669 -13.91903 -13.51248 -13.17468 -13.06094 -12.71335 -12.54119 -12.21280 -11.66431 -11.51455 -11.44009 -11.16946 -11.07686 -10.78995 -10.73167 -10.53223 -10.38691 -10.02637 -9.63163 -9.30613 -8.89617 -8.33814 -7.97662 -6.99158 -5.77239 -3.02242 1.34877 1.51584 2.67320 3.16968 3.40478 3.48742 3.52894 3.95002 4.47374 4.55741 4.92969 4.97371 5.06179 5.19445 5.28468 5.35868 5.48066 5.59455 5.64282 5.73542 5.84854 5.89252 6.00121 6.09775 6.45296 6.57334 6.68485 6.71074 7.38736 7.42503 7.66334 7.92607 7.99076 8.30323 9.21116 9.85584 10.27906 11.30863 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025013 B = 0.005757 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.138209 B = 4862.850027 C = 5322.038269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.067 3.933 3 O -0.309 6.309 4 C 0.313 3.687 5 C -0.177 4.177 6 C -0.005 4.005 7 C 0.181 3.819 8 N -0.588 5.588 9 C 0.157 3.843 10 C -0.256 4.256 11 H 0.095 0.905 12 C 0.001 3.999 13 N -0.902 5.902 14 Si 0.881 3.119 15 H -0.288 1.288 16 H -0.290 1.290 17 H -0.277 1.277 18 C -0.102 4.102 19 Cl -0.038 7.038 20 C 0.137 3.863 21 N -0.541 5.541 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.141 0.859 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.025 0.975 31 H -0.002 1.002 32 H 0.060 0.940 33 H 0.251 0.749 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.660 -9.368 -8.157 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.216 6.216 4 C 0.135 3.865 5 C -0.199 4.199 6 C -0.017 4.017 7 C 0.053 3.947 8 N -0.308 5.308 9 C 0.012 3.988 10 C -0.384 4.384 11 H 0.112 0.888 12 C -0.196 4.196 13 N -0.547 5.547 14 Si 0.711 3.289 15 H -0.215 1.215 16 H -0.216 1.216 17 H -0.203 1.203 18 C -0.132 4.132 19 Cl -0.009 7.009 20 C -0.018 4.018 21 N -0.265 5.265 22 H 0.095 0.905 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.159 0.841 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.017 0.983 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.038 -9.858 -7.948 16.158 hybrid contribution 1.306 -0.025 0.720 1.491 sum -8.732 -9.883 -7.228 15.039 Atomic orbital electron populations 1.21814 0.93315 1.02618 1.03246 1.22535 0.94459 0.81538 1.02345 1.86221 1.17099 1.30168 1.88160 1.19797 0.83624 0.90102 0.92984 1.20914 0.94631 0.95460 1.08904 1.21576 0.91604 0.99293 0.89218 1.19824 0.97166 0.88018 0.89734 1.44019 1.10071 1.68531 1.08174 1.20994 0.88029 0.96422 0.93305 1.19812 0.88350 1.29681 1.00601 0.88801 1.24703 0.98631 0.97462 0.98790 1.70231 1.44236 1.23784 1.16496 0.86603 0.82383 0.81203 0.78759 1.21495 1.21603 1.20303 1.21682 0.87421 0.94958 1.09153 1.98369 1.08534 1.97437 1.96581 1.22214 0.89166 0.95762 0.94674 1.67334 1.05497 1.32838 1.20868 0.90542 0.91680 0.91750 0.91846 0.91801 0.84091 0.92489 0.91185 0.95656 0.98348 0.92154 0.93839 0.82294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.07 0.79 6.03 37.16 0.22 1.01 16 3 O -0.31 -4.63 10.12 -18.80 -0.19 -4.82 16 4 C 0.31 5.22 7.49 -17.13 -0.13 5.10 16 5 C -0.18 -3.00 9.70 -39.28 -0.38 -3.39 16 6 C 0.00 -0.09 5.50 -104.32 -0.57 -0.66 16 7 C 0.18 3.59 5.41 -5.19 -0.03 3.56 16 8 N -0.59 -14.29 2.92 -182.51 -0.53 -14.82 16 9 C 0.16 3.82 9.06 59.84 0.54 4.36 16 10 C -0.26 -6.76 8.59 -15.06 -0.13 -6.89 16 11 H 0.09 2.37 4.69 -52.49 -0.25 2.12 16 12 C 0.00 0.04 4.96 -17.43 -0.09 -0.05 16 13 N -0.90 -26.07 10.50 55.49 0.58 -25.49 16 14 Si 0.88 21.85 29.62 -169.99 -5.04 16.82 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 C -0.10 -1.85 6.34 -39.36 -0.25 -2.10 16 19 Cl -0.04 -0.71 23.72 -51.86 -1.23 -1.94 16 20 C 0.14 2.24 10.98 -17.52 -0.19 2.05 16 21 N -0.54 -8.97 9.21 -13.30 -0.12 -9.09 16 22 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 27 H 0.14 2.15 8.05 -52.49 -0.42 1.73 16 28 H 0.06 1.01 7.94 -51.93 -0.41 0.60 16 29 H 0.07 1.37 7.58 -51.93 -0.39 0.97 16 30 H 0.03 0.65 7.81 -51.93 -0.41 0.24 16 31 H 0.00 -0.04 8.03 -51.93 -0.42 -0.46 16 32 H 0.06 1.62 6.45 -51.93 -0.33 1.29 16 33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.16 2.17 8.06 -52.48 -0.42 1.74 16 LS Contribution 299.29 15.07 4.51 4.51 Total: -1.00 -29.79 299.29 -6.94 -36.73 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -4.30 Total: -3.94 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -0.62 Total: 2.04 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.07 Total: -49.40 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.19 Total: -4.82 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.04 Total: 16.82 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.23 Total: -1.94 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.79 -6.94 -36.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250316858.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.986 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds