Wall clock time and date at job start Mon Mar 30 2020 01:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47175 * 2 1 4 4 C 1.35698 * 116.99959 * 180.02562 * 3 2 1 5 5 C 1.38918 * 119.66841 * 180.25363 * 4 3 2 6 6 C 1.38383 * 119.12151 * 180.24734 * 5 4 3 7 7 C 1.50697 * 120.76229 * 179.77431 * 6 5 4 8 8 N 1.46501 * 109.46815 * 104.71752 * 7 6 5 9 9 C 1.46494 * 120.00435 * 270.27772 * 8 7 6 10 10 C 1.36938 * 119.99340 * 90.00112 * 8 7 6 11 11 H 1.08000 * 120.00479 * 355.22823 * 10 8 7 12 12 C 1.38819 * 119.99343 * 175.22354 * 10 8 7 13 13 N 1.31615 * 120.00338 * 335.02141 * 12 10 8 14 14 Si 1.86803 * 119.99584 * 155.02877 * 12 10 8 15 15 H 1.48498 * 109.47564 * 84.85436 * 14 12 10 16 16 H 1.48504 * 109.46895 * 204.85657 * 14 12 10 17 17 H 1.48504 * 109.47200 * 324.85433 * 14 12 10 18 18 C 1.38921 * 118.47158 * 359.50301 * 6 5 4 19 19 Cl 1.73604 * 120.36418 * 180.27118 * 18 6 5 20 20 C 1.38154 * 119.26808 * 0.25090 * 18 6 5 21 21 N 1.31975 * 120.81497 * 0.02562 * 20 18 6 22 22 H 1.08995 * 109.47177 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47160 * 300.00609 * 1 2 3 24 24 H 1.08997 * 109.46980 * 59.99832 * 1 2 3 25 25 H 1.08996 * 109.46769 * 239.99543 * 2 1 3 26 26 H 1.09002 * 109.46759 * 119.99763 * 2 1 3 27 27 H 1.07996 * 120.43852 * 0.02562 * 5 4 3 28 28 H 1.09000 * 109.47166 * 344.72149 * 7 6 5 29 29 H 1.08997 * 109.47366 * 224.72305 * 7 6 5 30 30 H 1.09002 * 109.46975 * 264.28117 * 9 8 7 31 31 H 1.09001 * 109.46999 * 24.27817 * 9 8 7 32 32 H 1.08998 * 109.47274 * 144.28241 * 9 8 7 33 33 H 0.96999 * 119.99991 * 179.97438 * 13 12 10 34 34 H 1.08003 * 119.59218 * 180.02562 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3516 1.5250 -0.0005 5 6 3.8752 2.8117 0.0048 6 6 5.2487 2.9799 -0.0011 7 6 5.8564 4.3590 -0.0007 8 7 6.3804 4.6613 1.3336 9 6 5.5193 5.3009 2.3312 10 6 7.6736 4.3407 1.6499 11 1 8.2833 3.7964 0.9439 12 6 8.2009 4.7154 2.8782 13 7 7.7006 5.7489 3.5215 14 14 9.6207 3.7529 3.6179 15 1 10.9032 4.2619 3.0689 16 1 9.6142 3.9169 5.0938 17 1 9.4734 2.3145 3.2791 18 6 6.0545 1.8483 -0.0015 19 17 7.7837 2.0023 -0.0016 20 6 5.4646 0.5991 -0.0014 21 7 4.1510 0.4717 -0.0014 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.2189 3.6694 0.0097 28 1 5.0945 5.0918 -0.2664 29 1 6.6678 4.3987 -0.7274 30 1 5.6864 6.3780 2.3184 31 1 4.4753 5.0925 2.0972 32 1 5.7554 4.9084 3.3203 33 1 8.0688 6.0105 4.3799 34 1 6.0861 -0.2842 -0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250316858.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:05 Heat of formation + Delta-G solvation = 3.700672 kcal Electronic energy + Delta-G solvation = -18602.874304 eV Core-core repulsion = 15562.636683 eV Total energy + Delta-G solvation = -3040.237620 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.69117 -39.32136 -37.58568 -37.19687 -34.44234 -32.97100 -32.39444 -30.66079 -28.37049 -27.72547 -24.85805 -24.38645 -23.43965 -22.08992 -19.21074 -18.67982 -18.00935 -17.42227 -17.31741 -16.87711 -15.81134 -15.61641 -15.20515 -15.05875 -14.74978 -14.68612 -13.75602 -13.69322 -13.41478 -13.28276 -13.12521 -12.84344 -12.75588 -12.56349 -12.45629 -12.41190 -12.23965 -11.92090 -11.60867 -11.17177 -10.77960 -10.53071 -10.24157 -9.31802 -8.96171 -7.82531 -5.08107 0.03130 0.13262 1.27505 1.43636 1.48799 1.56106 2.02920 2.51694 2.66253 3.24198 3.33530 3.71200 3.80593 3.97943 4.00163 4.10677 4.21570 4.41902 4.47742 4.65387 4.70531 4.82139 4.84889 4.91879 4.97265 5.17813 5.22565 5.33542 5.43628 5.67476 5.87547 6.19159 6.31434 6.68561 7.18781 7.90383 8.29063 9.25303 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025013 B = 0.005757 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.138209 B = 4862.850027 C = 5322.038269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 O -0.314 6.314 4 C 0.312 3.688 5 C -0.178 4.178 6 C -0.014 4.014 7 C 0.181 3.819 8 N -0.605 5.605 9 C 0.172 3.828 10 C -0.244 4.244 11 H 0.105 0.895 12 C -0.056 4.056 13 N -0.936 5.936 14 Si 0.929 3.071 15 H -0.286 1.286 16 H -0.299 1.299 17 H -0.271 1.271 18 C -0.117 4.117 19 Cl -0.048 7.048 20 C 0.144 3.856 21 N -0.540 5.540 22 H 0.101 0.899 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.157 0.843 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.002 0.998 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.243 0.757 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.906 -11.028 -9.279 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 O -0.221 6.221 4 C 0.133 3.867 5 C -0.199 4.199 6 C -0.025 4.025 7 C 0.054 3.946 8 N -0.326 5.326 9 C 0.028 3.972 10 C -0.374 4.374 11 H 0.122 0.878 12 C -0.249 4.249 13 N -0.585 5.585 14 Si 0.758 3.242 15 H -0.213 1.213 16 H -0.225 1.225 17 H -0.196 1.196 18 C -0.147 4.147 19 Cl -0.019 7.019 20 C -0.011 4.011 21 N -0.265 5.265 22 H 0.119 0.881 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.175 0.825 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.021 0.979 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -11.312 -11.557 -9.118 18.565 hybrid contribution 1.542 0.393 0.917 1.836 sum -9.770 -11.163 -8.202 16.951 Atomic orbital electron populations 1.21833 0.90832 1.04300 1.03375 1.22833 0.96401 0.80006 1.02301 1.86235 1.16026 1.32204 1.87680 1.19946 0.84446 0.90036 0.92260 1.21055 0.94212 0.96403 1.08264 1.21330 0.92355 0.98337 0.90525 1.19926 0.97801 0.89346 0.87522 1.44201 1.09675 1.69090 1.09658 1.20699 0.89599 0.94827 0.92119 1.20222 0.89310 1.27602 1.00232 0.87785 1.25294 1.01173 0.98572 0.99889 1.70358 1.46081 1.25472 1.16612 0.85827 0.80432 0.80383 0.77514 1.21300 1.22540 1.19608 1.21835 0.86805 0.95721 1.10367 1.98353 1.09399 1.97464 1.96697 1.22602 0.89306 0.96046 0.93184 1.67437 1.05516 1.32842 1.20688 0.88084 0.91816 0.91337 0.91488 0.92211 0.82492 0.90367 0.91123 0.97924 0.95353 0.95243 0.94740 0.79697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 71.98 0.74 -1.38 16 2 C 0.06 1.25 6.03 71.98 0.43 1.69 16 3 O -0.31 -8.65 10.12 -90.18 -0.91 -9.57 16 4 C 0.31 9.64 7.49 84.80 0.63 10.28 16 5 C -0.18 -5.61 9.70 22.47 0.22 -5.39 16 6 C -0.01 -0.49 5.50 -19.67 -0.11 -0.60 16 7 C 0.18 6.87 5.41 85.63 0.46 7.33 16 8 N -0.60 -29.00 2.92 -731.32 -2.13 -31.13 16 9 C 0.17 8.39 9.06 127.77 1.16 9.55 16 10 C -0.24 -12.81 8.59 84.03 0.72 -12.08 16 11 H 0.10 5.16 4.69 -2.91 -0.01 5.15 16 12 C -0.06 -3.11 4.96 84.86 0.42 -2.69 16 13 N -0.94 -55.39 10.50 21.65 0.23 -55.16 16 14 Si 0.93 45.24 29.62 68.60 2.03 47.27 16 15 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 16 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 17 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 18 C -0.12 -4.03 6.34 22.41 0.14 -3.89 16 19 Cl -0.05 -1.72 23.72 -2.72 -0.06 -1.79 16 20 C 0.14 4.36 10.98 84.65 0.93 5.29 16 21 N -0.54 -16.55 9.21 -308.85 -2.85 -19.39 16 22 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 24 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 26 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 27 H 0.16 4.36 8.05 -2.91 -0.02 4.33 16 28 H 0.08 2.61 7.94 -2.39 -0.02 2.59 16 29 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 30 H 0.00 0.13 7.81 -2.39 -0.02 0.11 16 31 H 0.03 1.17 8.03 -2.39 -0.02 1.15 16 32 H 0.03 1.60 6.45 -2.39 -0.02 1.58 16 33 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 34 H 0.19 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -63.02 299.29 3.16 -59.86 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: 1.10 Total: 1.82 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 5.75 Total: 8.09 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -4.75 Total: -105.69 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.91 Total: -9.57 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.06 Total: -1.79 kcal Total: -63.02 3.16 -59.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250316858.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.563 kcal (2) G-P(sol) polarization free energy of solvation -63.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds