Wall clock time and date at job start Mon Mar 30 2020 01:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 S 1.81003 * 109.46853 * 179.97438 * 7 5 4 9 9 C 1.76196 * 99.99846 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00030 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99637 * 180.02562 * 9 8 7 12 12 N 1.31628 * 120.00513 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99570 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46946 * 90.00549 * 13 11 9 15 15 H 1.48504 * 109.46826 * 210.00017 * 13 11 9 16 16 H 1.48496 * 109.47486 * 329.99998 * 13 11 9 17 17 C 1.50694 * 109.47384 * 239.99869 * 2 1 3 18 18 N 1.30835 * 125.95934 * 284.69639 * 17 2 1 19 19 C 1.33245 * 109.82475 * 179.86432 * 18 17 2 20 20 N 1.30707 * 108.95143 * 0.39717 * 19 18 17 21 21 N 1.34433 * 125.96271 * 104.99815 * 17 2 1 22 22 C 1.46494 * 126.82185 * 359.94268 * 21 17 2 23 23 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 25 25 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 26 26 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 27 27 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 28 28 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 29 29 H 0.96995 * 120.00407 * 180.02562 * 12 11 9 30 30 H 1.08003 * 125.52282 * 180.19754 * 19 18 17 31 31 H 1.09003 * 109.47100 * 90.00253 * 22 21 17 32 32 H 1.08997 * 109.47349 * 209.99869 * 22 21 17 33 33 H 1.08999 * 109.47361 * 330.00292 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 16 2.7105 0.4346 4.9731 9 6 3.3121 -0.6309 6.2408 10 1 3.5201 -1.6677 6.0212 11 6 3.5178 -0.1380 7.5220 12 7 3.2629 1.1252 7.7900 13 14 4.1550 -1.2680 8.8662 14 1 5.6395 -1.2306 8.8817 15 1 3.6347 -0.8151 10.1813 16 1 3.6974 -2.6562 8.6042 17 6 2.0324 -0.7104 -1.2304 18 7 2.0352 -2.0045 -1.4230 19 6 2.5477 -2.2819 -2.6212 20 7 2.8875 -1.1638 -3.2068 21 7 2.5610 -0.1254 -2.3192 22 6 2.7568 1.3099 -2.5370 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.2490 -1.6316 1.1527 27 1 1.9759 -1.5504 3.8327 28 1 3.6480 -1.1212 3.3986 29 1 3.4070 1.4697 8.6852 30 1 2.6665 -3.2706 -3.0394 31 1 3.7412 1.6020 -2.1710 32 1 2.6857 1.5289 -3.6024 33 1 1.9894 1.8670 -1.9995 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255665987.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:18 Heat of formation + Delta-G solvation = 27.679708 kcal Electronic energy + Delta-G solvation = -17777.841845 eV Core-core repulsion = 14772.980491 eV Total energy + Delta-G solvation = -3004.861354 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.27109 -40.72451 -36.82201 -35.10218 -34.56960 -33.12526 -31.38299 -29.88816 -28.27181 -27.64334 -25.18529 -23.19191 -21.87045 -21.21964 -19.87929 -18.45534 -17.68654 -17.34876 -17.04267 -16.86180 -16.43493 -15.88880 -15.76924 -14.98229 -14.77671 -14.51491 -14.40009 -14.07082 -14.00865 -13.50239 -13.26338 -13.14889 -12.88428 -12.82879 -12.58926 -12.44394 -11.72323 -11.17362 -11.12896 -11.07098 -10.83008 -10.68270 -10.30534 -10.27122 -8.64078 -8.33509 -6.10655 0.39819 1.14845 1.31867 1.43555 1.48489 1.55213 1.58950 1.82373 2.25105 2.29666 2.80993 3.00897 3.31965 3.52556 3.66581 3.89324 4.02071 4.10808 4.30832 4.31592 4.43821 4.53106 4.60101 4.62054 4.78242 5.14032 5.16312 5.31081 5.39727 5.44011 5.64700 6.21440 6.38307 6.96326 7.08395 7.13441 8.75532 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037965 B = 0.003569 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.340083 B = 7844.026389 C = 8142.257979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.229 3.771 3 H 0.109 0.891 4 N -0.707 5.707 5 C 0.545 3.455 6 O -0.552 6.552 7 C -0.132 4.132 8 S -0.140 6.140 9 C -0.549 4.549 10 H 0.081 0.919 11 C 0.016 3.984 12 N -0.910 5.910 13 Si 0.996 3.004 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.259 1.259 17 C 0.266 3.734 18 N -0.552 5.552 19 C 0.197 3.803 20 N -0.339 5.339 21 N -0.372 5.372 22 C 0.078 3.922 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.417 0.583 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.271 0.729 30 H 0.250 0.750 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 -4.910 -20.929 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.121 3.879 3 H 0.127 0.873 4 N -0.362 5.362 5 C 0.331 3.669 6 O -0.429 6.429 7 C -0.283 4.283 8 S 0.087 5.913 9 C -0.697 4.697 10 H 0.100 0.900 11 C -0.189 4.189 12 N -0.546 5.546 13 Si 0.818 3.182 14 H -0.194 1.194 15 H -0.203 1.203 16 H -0.183 1.183 17 C -0.011 4.011 18 N -0.281 5.281 19 C -0.105 4.105 20 N -0.168 5.168 21 N -0.163 5.163 22 C -0.062 4.062 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.105 0.895 26 H 0.255 0.745 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.266 0.734 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.857 -2.915 -21.264 21.652 hybrid contribution 0.829 -1.943 0.831 2.270 sum -2.028 -4.858 -20.433 21.100 Atomic orbital electron populations 1.22107 0.91446 1.03795 1.03672 1.19253 0.95795 0.95287 0.77529 0.87310 1.45744 1.67938 1.14850 1.07667 1.19956 0.76418 0.86534 0.84028 1.90692 1.50274 1.17063 1.84915 1.23373 1.05486 1.03456 0.95966 1.85453 1.86728 1.16761 1.02340 1.23222 1.50998 0.98519 0.96946 0.90043 1.26074 0.95035 0.97164 1.00633 1.70163 1.46754 1.15395 1.22323 0.84990 0.78491 0.78272 0.76459 1.19387 1.20272 1.18307 1.24224 0.95629 0.89750 0.91528 1.70392 1.25496 1.12543 1.19637 1.26662 0.95151 0.99602 0.89080 1.78034 1.25603 0.96150 1.16979 1.50496 1.44533 1.09179 1.12093 1.22418 1.04975 0.72500 1.06319 0.91093 0.91510 0.89484 0.74536 0.87126 0.87474 0.91971 0.73423 0.89151 0.87141 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.47 71.98 0.68 -2.27 16 2 C 0.23 5.00 2.85 44.24 0.13 5.12 16 3 H 0.11 2.37 6.58 -2.39 -0.02 2.35 16 4 N -0.71 -18.23 5.07 -446.11 -2.26 -20.49 16 5 C 0.54 19.05 7.81 87.66 0.68 19.73 16 6 O -0.55 -23.27 15.52 -3.03 -0.05 -23.32 16 7 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 8 S -0.14 -7.57 20.57 -56.49 -1.16 -8.73 16 9 C -0.55 -31.03 9.50 67.96 0.65 -30.38 16 10 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 11 C 0.02 0.90 5.49 84.86 0.47 1.36 16 12 N -0.91 -55.15 13.22 21.65 0.29 -54.87 16 13 Si 1.00 43.27 29.55 68.60 2.03 45.30 16 14 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 15 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 17 C 0.27 5.68 6.78 138.22 0.94 6.62 16 18 N -0.55 -12.34 10.87 -191.78 -2.08 -14.42 16 19 C 0.20 3.81 13.03 180.77 2.36 6.17 16 20 N -0.34 -7.32 12.70 -61.24 -0.78 -8.10 16 21 N -0.37 -7.27 4.04 -359.89 -1.45 -8.72 16 22 C 0.08 0.90 11.11 127.77 1.42 2.32 16 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.42 9.57 8.34 -92.71 -0.77 8.80 16 27 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 28 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 29 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.25 2.72 8.06 -2.91 -0.02 2.70 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.11 0.89 7.39 -2.39 -0.02 0.88 16 Total: -1.00 -76.27 308.54 2.65 -73.62 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.36 Total: 15.73 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 7.76 Total: 4.01 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -6.29 Total: -106.61 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -7.57 SS G_CDS: -1.16 Total: -8.73 kcal Total: -76.27 2.65 -73.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255665987.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.300 kcal (2) G-P(sol) polarization free energy of solvation -76.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds