Wall clock time and date at job start Mon Mar 30 2020 01:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99670 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99659 * 3 2 1 5 5 H 1.48496 * 109.47530 * 30.00096 * 3 2 1 6 6 H 1.48501 * 109.47312 * 150.00340 * 3 2 1 7 7 C 1.38945 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 0.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 179.72366 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 O 1.45199 * 109.46651 * 180.02562 * 12 10 9 14 14 C 1.34235 * 116.99594 * 180.02562 * 13 12 10 15 15 O 1.20828 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00107 * 179.97438 * 14 13 12 17 17 H 1.09006 * 109.29382 * 319.58003 * 16 14 13 18 18 C 1.52913 * 109.30230 * 78.95902 * 16 14 13 19 19 C 1.53353 * 108.67659 * 171.06602 * 18 16 14 20 20 C 1.53071 * 108.42410 * 292.47132 * 19 18 16 21 21 C 1.50182 * 109.89102 * 48.89777 * 20 19 18 22 22 O 1.21274 * 118.24617 * 162.43700 * 21 20 19 23 23 N 1.33356 * 123.51041 * 342.41915 * 21 20 19 24 24 H 0.97004 * 120.00486 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 26 26 H 1.08994 * 109.46850 * 299.99690 * 12 10 9 27 27 H 1.08998 * 109.47115 * 59.99614 * 12 10 9 28 28 H 1.08999 * 109.60848 * 290.82327 * 18 16 14 29 29 H 1.09000 * 109.60273 * 51.31019 * 18 16 14 30 30 H 1.08991 * 109.67386 * 172.73890 * 19 18 16 31 31 H 1.08999 * 109.67121 * 52.20204 * 19 18 16 32 32 H 1.09001 * 109.39905 * 288.77390 * 20 19 18 33 33 H 1.08993 * 109.40080 * 169.02616 * 20 19 18 34 34 H 0.96997 * 117.94888 * 182.24378 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 -0.0052 10 6 4.0538 -2.3704 -0.0103 11 8 3.4473 -3.4208 -0.0104 12 6 5.5608 -2.3704 -0.0161 13 8 6.0447 -3.7393 -0.0216 14 6 7.3754 -3.9152 -0.0265 15 8 8.1114 -2.9569 -0.0268 16 6 7.9515 -5.3077 -0.0318 17 1 7.3677 -5.9415 0.6357 18 6 7.8844 -5.8771 -1.4494 19 6 8.6707 -7.1931 -1.4878 20 6 10.1545 -6.8763 -1.2851 21 6 10.3262 -5.9701 -0.0999 22 8 11.4282 -5.8790 0.3981 23 7 9.3318 -5.2599 0.4341 24 1 -0.4851 0.8400 -0.0004 25 1 3.8648 -0.3632 -0.0056 26 1 5.9206 -1.8546 -0.9063 27 1 5.9274 -1.8585 0.8736 28 1 6.8452 -6.0640 -1.7198 29 1 8.3250 -5.1674 -2.1498 30 1 8.5276 -7.6781 -2.4533 31 1 8.3238 -7.8511 -0.6910 32 1 10.5447 -6.3848 -2.1762 33 1 10.7025 -7.8029 -1.1147 34 1 9.5401 -4.6745 1.1790 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256598638.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:53 Heat of formation + Delta-G solvation = -156.723616 kcal Electronic energy + Delta-G solvation = -20206.417165 eV Core-core repulsion = 16718.513861 eV Total energy + Delta-G solvation = -3487.903304 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.23186 -40.00106 -38.43680 -36.90038 -36.25373 -34.13193 -33.42352 -31.86862 -30.68681 -28.67035 -25.90763 -24.42230 -23.23471 -21.45403 -19.74441 -19.55413 -18.70799 -18.04646 -17.72606 -16.89205 -16.43477 -16.02496 -15.74298 -15.29208 -14.91575 -14.53690 -14.45256 -14.11472 -13.84746 -13.72104 -13.06080 -12.61125 -12.59093 -12.30336 -12.20588 -11.94184 -11.51437 -11.44611 -11.31669 -10.79807 -10.70781 -10.68156 -10.12797 -10.09326 -9.73627 -9.53538 -8.74792 -8.35386 -6.44669 -3.97995 1.89444 2.07563 2.44696 2.94334 2.98195 2.99715 3.08567 3.47646 3.98515 4.08009 4.12910 4.17837 4.34761 4.47782 4.73168 4.81075 4.96896 5.04866 5.22299 5.26440 5.32116 5.42952 5.44136 5.49646 5.58899 5.69990 6.26941 6.37371 6.91183 7.37097 7.53654 7.86097 7.94468 8.41213 8.77697 9.23744 9.58240 10.67436 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.044874 B = 0.003438 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.815834 B = 8142.356292 C = 8550.893776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.310 4.310 8 H 0.123 0.877 9 N -0.578 5.578 10 C 0.446 3.554 11 O -0.557 6.557 12 C 0.058 3.942 13 O -0.318 6.318 14 C 0.448 3.552 15 O -0.502 6.502 16 C 0.155 3.845 17 H 0.119 0.881 18 C -0.131 4.131 19 C -0.121 4.121 20 C -0.138 4.138 21 C 0.527 3.473 22 O -0.552 6.552 23 N -0.704 5.704 24 H 0.276 0.724 25 H 0.373 0.627 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.490 -9.712 -3.026 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.438 4.438 8 H 0.141 0.859 9 N -0.217 5.217 10 C 0.231 3.769 11 O -0.439 6.439 12 C -0.020 4.020 13 O -0.231 6.231 14 C 0.288 3.712 15 O -0.389 6.389 16 C 0.048 3.952 17 H 0.136 0.864 18 C -0.168 4.168 19 C -0.159 4.159 20 C -0.178 4.178 21 C 0.315 3.685 22 O -0.430 6.430 23 N -0.358 5.358 24 H 0.087 0.913 25 H 0.206 0.794 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 16.567 -10.097 -2.960 19.626 hybrid contribution 0.550 2.039 0.325 2.136 sum 17.117 -8.058 -2.636 19.102 Atomic orbital electron populations 1.69608 1.05672 1.27853 1.48090 1.25038 0.95518 0.98088 0.97165 0.86682 0.79861 0.83854 0.79125 1.19371 1.19890 1.19364 1.19427 0.78615 0.96907 1.48845 0.85949 1.42037 1.07670 1.05700 1.66338 1.19135 0.86793 0.85192 0.85771 1.90608 1.68956 1.30661 1.53670 1.22816 0.95357 0.80079 1.03753 1.86543 1.22383 1.31628 1.82578 1.23869 0.81657 0.92416 0.73231 1.90703 1.60710 1.42584 1.44928 1.20457 0.83434 0.91166 1.00124 0.86380 1.21931 1.04107 0.97923 0.92885 1.21676 0.93215 0.96809 1.04154 1.21721 0.98725 1.00383 0.96943 1.20195 0.83335 0.80261 0.84747 1.90779 1.24013 1.66420 1.61817 1.45340 1.07331 1.46382 1.36733 0.91312 0.79373 0.89269 0.89270 0.87592 0.90054 0.89405 0.90298 0.87871 0.87713 0.75774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.59 13.96 55.50 0.77 -23.81 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.57 27.73 -169.99 -4.71 13.86 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.16 6.52 56.52 0.37 -4.79 16 7 C -0.31 -8.42 10.16 -14.93 -0.15 -8.57 16 8 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 9 N -0.58 -13.18 5.09 -10.96 -0.06 -13.24 16 10 C 0.45 9.79 7.86 -10.98 -0.09 9.70 16 11 O -0.56 -14.54 16.08 -14.11 -0.23 -14.76 16 12 C 0.06 0.95 5.94 36.01 0.21 1.17 16 13 O -0.32 -4.99 9.76 -45.92 -0.45 -5.44 16 14 C 0.45 5.84 7.11 36.00 0.26 6.10 16 15 O -0.50 -7.64 16.13 -18.75 -0.30 -7.94 16 16 C 0.16 1.44 3.57 -69.53 -0.25 1.19 16 17 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 18 C -0.13 -0.94 5.29 -26.59 -0.14 -1.08 16 19 C -0.12 -0.63 6.03 -26.51 -0.16 -0.79 16 20 C -0.14 -0.94 6.03 -28.10 -0.17 -1.11 16 21 C 0.53 5.70 7.71 -11.87 -0.09 5.61 16 22 O -0.55 -8.26 17.78 5.56 0.10 -8.16 16 23 N -0.70 -7.16 4.79 -55.99 -0.27 -7.43 16 24 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.37 7.40 5.77 -40.82 -0.24 7.16 16 26 H 0.09 1.29 8.13 -51.93 -0.42 0.87 16 27 H 0.09 1.31 8.13 -51.93 -0.42 0.89 16 28 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.37 8.13 -51.93 -0.42 -0.05 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.41 4.37 8.44 -40.82 -0.34 4.02 16 LS Contribution 300.37 15.07 4.53 4.53 Total: -1.00 -34.85 300.37 -5.23 -40.08 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -3.94 Total: 8.99 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: -0.67 Total: 13.33 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.45 Total: -44.48 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.88 Total: -36.31 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.71 Total: 13.86 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.85 -5.23 -40.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256598638.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.644 kcal (2) G-P(sol) polarization free energy of solvation -34.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds