Wall clock time and date at job start Mon Mar 30 2020 01:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99670 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99659 * 3 2 1 5 5 H 1.48496 * 109.47530 * 30.00096 * 3 2 1 6 6 H 1.48501 * 109.47312 * 150.00340 * 3 2 1 7 7 C 1.38945 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 0.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 179.72366 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 O 1.45199 * 109.46651 * 180.02562 * 12 10 9 14 14 C 1.34235 * 116.99594 * 180.02562 * 13 12 10 15 15 O 1.20828 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00107 * 179.97438 * 14 13 12 17 17 H 1.09006 * 109.29382 * 319.58003 * 16 14 13 18 18 C 1.52913 * 109.30230 * 78.95902 * 16 14 13 19 19 C 1.53353 * 108.67659 * 171.06602 * 18 16 14 20 20 C 1.53071 * 108.42410 * 292.47132 * 19 18 16 21 21 C 1.50182 * 109.89102 * 48.89777 * 20 19 18 22 22 O 1.21274 * 118.24617 * 162.43700 * 21 20 19 23 23 N 1.33356 * 123.51041 * 342.41915 * 21 20 19 24 24 H 0.97004 * 120.00486 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 26 26 H 1.08994 * 109.46850 * 299.99690 * 12 10 9 27 27 H 1.08998 * 109.47115 * 59.99614 * 12 10 9 28 28 H 1.08999 * 109.60848 * 290.82327 * 18 16 14 29 29 H 1.09000 * 109.60273 * 51.31019 * 18 16 14 30 30 H 1.08991 * 109.67386 * 172.73890 * 19 18 16 31 31 H 1.08999 * 109.67121 * 52.20204 * 19 18 16 32 32 H 1.09001 * 109.39905 * 288.77390 * 20 19 18 33 33 H 1.08993 * 109.40080 * 169.02616 * 20 19 18 34 34 H 0.96997 * 117.94888 * 182.24378 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 -0.0052 10 6 4.0538 -2.3704 -0.0103 11 8 3.4473 -3.4208 -0.0104 12 6 5.5608 -2.3704 -0.0161 13 8 6.0447 -3.7393 -0.0216 14 6 7.3754 -3.9152 -0.0265 15 8 8.1114 -2.9569 -0.0268 16 6 7.9515 -5.3077 -0.0318 17 1 7.3677 -5.9415 0.6357 18 6 7.8844 -5.8771 -1.4494 19 6 8.6707 -7.1931 -1.4878 20 6 10.1545 -6.8763 -1.2851 21 6 10.3262 -5.9701 -0.0999 22 8 11.4282 -5.8790 0.3981 23 7 9.3318 -5.2599 0.4341 24 1 -0.4851 0.8400 -0.0004 25 1 3.8648 -0.3632 -0.0056 26 1 5.9206 -1.8546 -0.9063 27 1 5.9274 -1.8585 0.8736 28 1 6.8452 -6.0640 -1.7198 29 1 8.3250 -5.1674 -2.1498 30 1 8.5276 -7.6781 -2.4533 31 1 8.3238 -7.8511 -0.6910 32 1 10.5447 -6.3848 -2.1762 33 1 10.7025 -7.8029 -1.1147 34 1 9.5401 -4.6745 1.1790 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256598638.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:53 Heat of formation + Delta-G solvation = -183.692704 kcal Electronic energy + Delta-G solvation = -20207.586632 eV Core-core repulsion = 16718.513861 eV Total energy + Delta-G solvation = -3489.072772 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.20523 -41.02846 -40.14641 -37.94060 -37.28932 -36.08507 -34.06000 -33.86834 -31.56252 -30.03954 -26.94626 -26.00287 -23.87465 -22.52415 -21.54628 -20.55266 -20.19435 -19.14377 -18.68695 -17.99222 -17.64911 -17.34426 -16.97596 -16.68818 -16.09202 -15.85473 -15.36406 -15.20329 -14.80105 -14.67568 -14.61989 -14.22632 -13.95420 -13.84044 -13.05921 -13.01233 -12.71524 -12.46289 -12.07832 -12.01585 -11.93393 -11.89200 -11.77252 -11.58869 -10.96012 -10.61629 -10.38821 -10.34305 -8.46299 -6.09376 0.87110 1.04900 1.30108 1.33194 1.43693 1.58085 1.75476 2.16097 2.19810 2.73581 3.08274 3.41921 3.51172 3.53209 3.82894 3.85777 4.00504 4.09390 4.11537 4.20747 4.50470 4.72007 4.82835 4.98015 5.07277 5.15082 5.26848 5.46837 5.54312 5.85453 6.12619 6.40077 6.52126 6.77161 7.03157 7.25576 7.76864 8.70183 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.044874 B = 0.003438 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.815834 B = 8142.356292 C = 8550.893776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.959 3.041 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.232 1.232 7 C -0.333 4.333 8 H 0.063 0.937 9 N -0.577 5.577 10 C 0.449 3.551 11 O -0.605 6.605 12 C 0.067 3.933 13 O -0.334 6.334 14 C 0.452 3.548 15 O -0.523 6.523 16 C 0.160 3.840 17 H 0.141 0.859 18 C -0.131 4.131 19 C -0.111 4.111 20 C -0.133 4.133 21 C 0.522 3.478 22 O -0.601 6.601 23 N -0.703 5.703 24 H 0.282 0.718 25 H 0.392 0.608 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.644 -9.165 -3.700 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.779 3.221 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.155 1.155 7 C -0.462 4.462 8 H 0.081 0.919 9 N -0.219 5.219 10 C 0.236 3.764 11 O -0.490 6.490 12 C -0.010 4.010 13 O -0.248 6.248 14 C 0.295 3.705 15 O -0.412 6.412 16 C 0.053 3.947 17 H 0.158 0.842 18 C -0.168 4.168 19 C -0.148 4.148 20 C -0.172 4.172 21 C 0.312 3.688 22 O -0.483 6.483 23 N -0.355 5.355 24 H 0.092 0.908 25 H 0.228 0.772 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.096 0.904 30 H 0.131 0.869 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 18.726 -9.563 -3.644 21.340 hybrid contribution -0.156 1.754 0.544 1.843 sum 18.570 -7.809 -3.100 20.382 Atomic orbital electron populations 1.69774 1.08069 1.29548 1.49098 1.26059 0.96418 1.02570 0.95623 0.85441 0.79565 0.76928 0.80144 1.17931 1.19838 1.15542 1.19013 0.80740 0.95356 1.51049 0.91893 1.41826 1.06119 1.07072 1.66838 1.20133 0.89248 0.84032 0.82961 1.90586 1.70873 1.32447 1.55048 1.22630 0.90725 0.81348 1.06324 1.86546 1.24068 1.31049 1.83102 1.24549 0.80368 0.93644 0.71955 1.90696 1.60784 1.43672 1.46042 1.20718 0.82741 0.89021 1.02223 0.84205 1.22017 1.04973 0.98804 0.91046 1.21684 0.91411 0.95794 1.05959 1.21788 1.00260 0.99987 0.95198 1.20976 0.82450 0.80171 0.85172 1.90755 1.25869 1.68156 1.63492 1.45438 1.07788 1.45939 1.36324 0.90830 0.77154 0.86462 0.86707 0.86882 0.90411 0.86909 0.89325 0.86758 0.86424 0.76494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.67 13.96 21.66 0.30 -53.37 16 2 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 3 Si 0.96 36.99 27.73 68.60 1.90 38.89 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.23 -7.53 6.52 99.48 0.65 -6.88 16 7 C -0.33 -18.68 10.16 84.04 0.85 -17.83 16 8 H 0.06 4.20 7.39 -2.91 -0.02 4.18 16 9 N -0.58 -25.96 5.09 -306.98 -1.56 -27.52 16 10 C 0.45 19.51 7.86 87.66 0.69 20.20 16 11 O -0.61 -32.35 16.08 15.73 0.25 -32.09 16 12 C 0.07 2.05 5.94 71.24 0.42 2.47 16 13 O -0.33 -9.85 9.76 -45.11 -0.44 -10.29 16 14 C 0.45 10.88 7.11 71.24 0.51 11.39 16 15 O -0.52 -14.87 16.13 21.96 0.35 -14.51 16 16 C 0.16 2.60 3.57 44.36 0.16 2.76 16 17 H 0.14 1.74 8.14 -2.38 -0.02 1.72 16 18 C -0.13 -1.51 5.29 30.68 0.16 -1.35 16 19 C -0.11 -0.77 6.03 30.74 0.19 -0.59 16 20 C -0.13 -1.45 6.03 29.71 0.18 -1.27 16 21 C 0.52 10.61 7.71 87.72 0.68 11.29 16 22 O -0.60 -17.84 17.78 -3.01 -0.05 -17.89 16 23 N -0.70 -13.31 4.79 -450.23 -2.16 -15.47 16 24 H 0.28 14.91 8.31 -92.71 -0.77 14.14 16 25 H 0.39 14.47 5.77 -92.71 -0.53 13.94 16 26 H 0.12 2.99 8.13 -2.39 -0.02 2.97 16 27 H 0.12 2.99 8.13 -2.39 -0.02 2.97 16 28 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 0.98 8.10 -2.39 -0.02 0.96 16 30 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.09 0.50 8.13 -2.39 -0.02 0.48 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.40 8.33 8.44 -92.71 -0.78 7.55 16 Total: -1.00 -80.61 300.37 2.68 -77.93 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -0.22 Total: 27.14 kcal Atomic # 6 Polarization: 22.89 SS G_CDS: 4.30 Total: 27.19 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -3.42 Total: -96.36 kcal Atomic # 8 Polarization: -74.90 SS G_CDS: 0.11 Total: -74.79 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 1.90 Total: 38.89 kcal Total: -80.61 2.68 -77.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256598638.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.761 kcal (2) G-P(sol) polarization free energy of solvation -80.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds