Wall clock time and date at job start Mon Mar 30 2020 01:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47301 * 2 1 4 4 C 1.50698 * 109.47319 * 239.99615 * 2 1 3 5 5 H 1.08004 * 120.00127 * 245.38282 * 4 2 1 6 6 C 1.37879 * 119.99592 * 65.37748 * 4 2 1 7 7 N 1.31515 * 119.99616 * 184.88880 * 6 4 2 8 8 Si 1.86791 * 120.00348 * 5.16595 * 6 4 2 9 9 H 1.48500 * 109.47313 * 269.72497 * 8 6 4 10 10 H 1.48507 * 109.46966 * 29.72411 * 8 6 4 11 11 H 1.48502 * 109.47222 * 149.72043 * 8 6 4 12 12 C 1.50707 * 109.47104 * 119.99673 * 2 1 3 13 13 O 1.20822 * 119.99609 * 119.99984 * 12 2 1 14 14 O 1.34227 * 119.99743 * 300.00114 * 12 2 1 15 15 C 1.45204 * 116.99488 * 179.97438 * 14 12 2 16 16 C 1.50705 * 109.46672 * 179.97438 * 15 14 12 17 17 C 1.38200 * 119.97443 * 269.72171 * 16 15 14 18 18 C 1.38476 * 120.02709 * 179.77096 * 17 16 15 19 19 F 1.35101 * 120.01777 * 180.27203 * 18 17 16 20 20 C 1.38416 * 119.97131 * 0.53070 * 18 17 16 21 21 C 1.38424 * 119.95322 * 359.72406 * 20 18 17 22 22 F 1.35094 * 120.01364 * 179.97438 * 21 20 18 23 23 C 1.38212 * 119.97311 * 90.00407 * 16 15 14 24 24 H 1.08997 * 109.47139 * 174.98602 * 1 2 3 25 25 H 1.09000 * 109.47363 * 294.98770 * 1 2 3 26 26 H 1.09003 * 109.47063 * 54.98852 * 1 2 3 27 27 H 0.97000 * 120.00189 * 355.27243 * 7 6 4 28 28 H 1.09001 * 109.47255 * 299.99203 * 15 14 12 29 29 H 1.08994 * 109.47520 * 59.99964 * 15 14 12 30 30 H 1.08006 * 119.98783 * 0.02562 * 17 16 15 31 31 H 1.08005 * 120.02824 * 179.74973 * 20 18 17 32 32 H 1.08000 * 119.98743 * 359.96874 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5797 -1.6365 -1.1336 6 6 1.7931 -0.1783 -2.4796 7 7 2.1463 -0.8449 -3.5569 8 14 0.9744 1.4927 -2.6419 9 1 -0.4985 1.3174 -2.7141 10 1 1.3162 2.3280 -1.4626 11 1 1.4545 2.1613 -3.8779 12 6 2.0323 -0.7104 1.2306 13 8 2.7270 -1.6927 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2268 -0.9862 3.5897 16 6 1.7628 -0.3288 4.8640 17 6 2.5311 0.6588 5.4508 18 6 2.1035 1.2669 6.6191 19 9 2.8520 2.2362 7.1896 20 6 0.9115 0.8775 7.2051 21 6 0.1454 -0.1155 6.6194 22 9 -1.0180 -0.4969 7.1906 23 6 0.5722 -0.7182 5.4480 24 1 -0.3633 -1.0237 -0.0898 25 1 -0.3634 0.4341 0.9315 26 1 -0.3633 0.5896 -0.8417 27 1 2.6361 -1.6779 -3.4730 28 1 1.8624 -2.0130 3.5567 29 1 3.3162 -0.9860 3.5570 30 1 3.4633 0.9594 4.9957 31 1 0.5792 1.3483 8.1186 32 1 -0.0253 -1.4930 4.9907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261591622.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:43 Heat of formation + Delta-G solvation = -159.482759 kcal Electronic energy + Delta-G solvation = -19710.954145 eV Core-core repulsion = 16079.550929 eV Total energy + Delta-G solvation = -3631.403216 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.30055 -49.28062 -40.05426 -39.04853 -35.98766 -34.03486 -32.35341 -31.23257 -30.66794 -27.09958 -24.93662 -23.30855 -23.18809 -21.93723 -19.79067 -18.17993 -17.60001 -17.50286 -16.79696 -16.70320 -16.24415 -16.15801 -15.79010 -15.58897 -15.38445 -14.62935 -14.09561 -13.61345 -13.44493 -12.99221 -12.77409 -12.45700 -12.26960 -12.20391 -11.94958 -11.66414 -11.54640 -11.21099 -10.64019 -10.37676 -10.30512 -9.84756 -9.56988 -9.20000 -9.07764 -8.76514 -8.54090 -6.54657 -4.19594 0.53315 0.64182 2.80195 3.04018 3.30982 3.36347 3.41023 3.51186 3.61089 4.00791 4.20710 4.39724 4.46310 4.59688 4.79144 5.07783 5.21251 5.24324 5.38181 5.44523 5.62481 5.67082 5.78065 5.99705 6.14399 6.31924 6.39815 6.40822 6.68967 6.96210 7.09801 7.69899 8.35235 8.60975 8.86505 9.51925 10.87923 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027434 B = 0.003991 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.385997 B = 7013.351853 C = 7085.026356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.026 3.974 3 H 0.065 0.935 4 C -0.594 4.594 5 H 0.077 0.923 6 C 0.031 3.969 7 N -0.905 5.905 8 Si 1.052 2.948 9 H -0.280 1.280 10 H -0.277 1.277 11 H -0.287 1.287 12 C 0.473 3.527 13 O -0.504 6.504 14 O -0.361 6.361 15 C 0.100 3.900 16 C -0.027 4.027 17 C -0.141 4.141 18 C 0.128 3.872 19 F -0.130 7.130 20 C -0.187 4.187 21 C 0.128 3.872 22 F -0.130 7.130 23 C -0.140 4.140 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.270 0.730 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.065 4.038 20.994 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.006 3.994 3 H 0.082 0.918 4 C -0.631 4.631 5 H 0.095 0.905 6 C -0.174 4.174 7 N -0.539 5.539 8 Si 0.881 3.119 9 H -0.207 1.207 10 H -0.203 1.203 11 H -0.213 1.213 12 C 0.317 3.683 13 O -0.390 6.390 14 O -0.280 6.280 15 C 0.026 3.974 16 C -0.027 4.027 17 C -0.160 4.160 18 C 0.109 3.891 19 F -0.108 7.108 20 C -0.207 4.207 21 C 0.109 3.891 22 F -0.108 7.108 23 C -0.159 4.159 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.428 4.815 19.908 20.767 hybrid contribution 0.605 -1.160 1.446 1.949 sum -2.823 3.655 21.354 21.848 Atomic orbital electron populations 1.22066 0.96268 1.01844 1.00050 1.19268 0.94210 0.97727 0.88202 0.91777 1.22057 1.40443 1.11155 0.89485 0.90529 1.25776 0.96459 1.03515 0.91621 1.70793 1.36145 1.16940 1.30036 0.83902 0.76489 0.75523 0.75987 1.20729 1.20337 1.21313 1.24821 0.76906 0.83249 0.83360 1.90540 1.35707 1.26255 1.86484 1.86677 1.70541 1.55768 1.15012 1.21634 0.99500 0.95054 0.81248 1.19235 0.93409 0.95196 0.94899 1.21180 1.02462 0.97182 0.95137 1.17184 0.90110 0.88796 0.93024 1.91545 1.75179 1.60089 1.84029 1.21051 0.95543 1.00640 1.03476 1.17186 0.83124 0.95827 0.92986 1.91542 1.45271 1.90025 1.84002 1.21179 0.97245 1.02431 0.95086 0.92582 0.93895 0.92602 0.91937 0.89972 0.89965 0.83531 0.83305 0.83539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.75 37.16 0.32 -2.65 16 2 C 0.03 0.60 2.32 -92.92 -0.22 0.38 16 3 H 0.06 1.45 6.64 -51.93 -0.34 1.11 16 4 C -0.59 -16.66 8.72 -34.44 -0.30 -16.96 16 5 H 0.08 2.41 7.00 -52.48 -0.37 2.04 16 6 C 0.03 0.88 5.43 -17.82 -0.10 0.79 16 7 N -0.91 -27.53 13.70 55.43 0.76 -26.77 16 8 Si 1.05 24.27 25.28 -169.99 -4.30 19.97 16 9 H -0.28 -6.08 6.82 56.52 0.39 -5.70 16 10 H -0.28 -5.82 6.35 56.52 0.36 -5.46 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.47 10.33 7.25 36.01 0.26 10.59 16 13 O -0.50 -12.33 15.22 -18.75 -0.29 -12.61 16 14 O -0.36 -6.40 10.01 -39.25 -0.39 -6.79 16 15 C 0.10 1.37 5.59 36.01 0.20 1.57 16 16 C -0.03 -0.31 5.52 -104.64 -0.58 -0.89 16 17 C -0.14 -1.49 9.68 -39.51 -0.38 -1.87 16 18 C 0.13 1.31 7.30 -39.43 -0.29 1.02 16 19 F -0.13 -1.37 17.27 2.25 0.04 -1.33 16 20 C -0.19 -1.76 10.01 -39.45 -0.39 -2.15 16 21 C 0.13 1.30 7.30 -39.43 -0.29 1.02 16 22 F -0.13 -1.36 17.27 2.25 0.04 -1.33 16 23 C -0.14 -1.49 9.68 -39.50 -0.38 -1.87 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.04 0.75 7.99 -51.93 -0.42 0.33 16 26 H 0.06 1.14 4.41 -51.93 -0.23 0.91 16 27 H 0.27 8.27 8.72 -40.82 -0.36 7.91 16 28 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 29 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 30 H 0.15 1.39 8.06 -52.48 -0.42 0.96 16 31 H 0.15 1.10 8.06 -52.48 -0.42 0.67 16 32 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 289.79 15.07 4.37 4.37 Total: -1.00 -30.97 289.79 -5.01 -35.98 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -3.10 Total: -0.47 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -2.14 Total: -11.02 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.76 Total: -26.77 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.68 Total: -19.41 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.08 Total: -2.65 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -4.30 Total: 19.97 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.97 -5.01 -35.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261591622.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.507 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds