Wall clock time and date at job start Mon Mar 30 2020 01:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47301 * 2 1 4 4 C 1.50698 * 109.47319 * 239.99615 * 2 1 3 5 5 H 1.08004 * 120.00127 * 245.38282 * 4 2 1 6 6 C 1.37879 * 119.99592 * 65.37748 * 4 2 1 7 7 N 1.31515 * 119.99616 * 184.88880 * 6 4 2 8 8 Si 1.86791 * 120.00348 * 5.16595 * 6 4 2 9 9 H 1.48500 * 109.47313 * 269.72497 * 8 6 4 10 10 H 1.48507 * 109.46966 * 29.72411 * 8 6 4 11 11 H 1.48502 * 109.47222 * 149.72043 * 8 6 4 12 12 C 1.50707 * 109.47104 * 119.99673 * 2 1 3 13 13 O 1.20822 * 119.99609 * 119.99984 * 12 2 1 14 14 O 1.34227 * 119.99743 * 300.00114 * 12 2 1 15 15 C 1.45204 * 116.99488 * 179.97438 * 14 12 2 16 16 C 1.50705 * 109.46672 * 179.97438 * 15 14 12 17 17 C 1.38200 * 119.97443 * 269.72171 * 16 15 14 18 18 C 1.38476 * 120.02709 * 179.77096 * 17 16 15 19 19 F 1.35101 * 120.01777 * 180.27203 * 18 17 16 20 20 C 1.38416 * 119.97131 * 0.53070 * 18 17 16 21 21 C 1.38424 * 119.95322 * 359.72406 * 20 18 17 22 22 F 1.35094 * 120.01364 * 179.97438 * 21 20 18 23 23 C 1.38212 * 119.97311 * 90.00407 * 16 15 14 24 24 H 1.08997 * 109.47139 * 174.98602 * 1 2 3 25 25 H 1.09000 * 109.47363 * 294.98770 * 1 2 3 26 26 H 1.09003 * 109.47063 * 54.98852 * 1 2 3 27 27 H 0.97000 * 120.00189 * 355.27243 * 7 6 4 28 28 H 1.09001 * 109.47255 * 299.99203 * 15 14 12 29 29 H 1.08994 * 109.47520 * 59.99964 * 15 14 12 30 30 H 1.08006 * 119.98783 * 0.02562 * 17 16 15 31 31 H 1.08005 * 120.02824 * 179.74973 * 20 18 17 32 32 H 1.08000 * 119.98743 * 359.96874 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5797 -1.6365 -1.1336 6 6 1.7931 -0.1783 -2.4796 7 7 2.1463 -0.8449 -3.5569 8 14 0.9744 1.4927 -2.6419 9 1 -0.4985 1.3174 -2.7141 10 1 1.3162 2.3280 -1.4626 11 1 1.4545 2.1613 -3.8779 12 6 2.0323 -0.7104 1.2306 13 8 2.7270 -1.6927 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2268 -0.9862 3.5897 16 6 1.7628 -0.3288 4.8640 17 6 2.5311 0.6588 5.4508 18 6 2.1035 1.2669 6.6191 19 9 2.8520 2.2362 7.1896 20 6 0.9115 0.8775 7.2051 21 6 0.1454 -0.1155 6.6194 22 9 -1.0180 -0.4969 7.1906 23 6 0.5722 -0.7182 5.4480 24 1 -0.3633 -1.0237 -0.0898 25 1 -0.3634 0.4341 0.9315 26 1 -0.3633 0.5896 -0.8417 27 1 2.6361 -1.6779 -3.4730 28 1 1.8624 -2.0130 3.5567 29 1 3.3162 -0.9860 3.5570 30 1 3.4633 0.9594 4.9957 31 1 0.5792 1.3483 8.1186 32 1 -0.0253 -1.4930 4.9907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261591622.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:43 Heat of formation + Delta-G solvation = -177.449837 kcal Electronic energy + Delta-G solvation = -19711.733256 eV Core-core repulsion = 16079.550929 eV Total energy + Delta-G solvation = -3632.182327 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.09343 -50.07340 -41.55666 -40.04465 -37.53715 -35.99342 -33.57916 -32.97280 -31.47061 -28.17481 -26.85313 -24.98576 -23.98959 -22.93839 -21.52984 -19.61616 -19.03448 -18.48463 -18.40025 -17.50318 -17.46845 -17.11944 -17.02725 -16.61245 -16.38281 -15.71745 -15.42055 -15.12664 -14.79724 -14.43406 -14.06537 -13.97449 -13.62176 -13.42823 -13.06007 -13.04587 -12.97915 -12.51889 -12.39358 -12.07657 -11.75235 -11.56544 -11.17689 -10.86541 -10.66048 -10.17137 -9.87855 -8.81226 -6.46844 -0.30664 -0.15847 1.31962 1.49033 1.58936 1.68102 1.74298 2.37766 2.50337 2.70170 3.07141 3.18521 3.29335 3.67678 3.85606 3.92907 4.05403 4.10630 4.29810 4.40224 4.48815 4.59719 4.65585 4.82599 4.86731 4.87621 5.01705 5.13319 5.31763 5.42858 5.61445 5.72357 6.01545 6.51509 6.93258 7.35518 8.60743 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027434 B = 0.003991 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.385997 B = 7013.351853 C = 7085.026356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.015 3.985 3 H 0.082 0.918 4 C -0.600 4.600 5 H 0.024 0.976 6 C -0.020 4.020 7 N -0.939 5.939 8 Si 1.090 2.910 9 H -0.254 1.254 10 H -0.238 1.238 11 H -0.292 1.292 12 C 0.480 3.520 13 O -0.542 6.542 14 O -0.351 6.351 15 C 0.096 3.904 16 C -0.038 4.038 17 C -0.139 4.139 18 C 0.123 3.877 19 F -0.132 7.132 20 C -0.174 4.174 21 C 0.123 3.877 22 F -0.131 7.131 23 C -0.138 4.138 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.250 0.750 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.155 0.845 31 H 0.171 0.829 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.609 6.237 23.214 24.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.004 4.004 3 H 0.100 0.900 4 C -0.637 4.637 5 H 0.043 0.957 6 C -0.217 4.217 7 N -0.575 5.575 8 Si 0.910 3.090 9 H -0.179 1.179 10 H -0.162 1.162 11 H -0.219 1.219 12 C 0.325 3.675 13 O -0.431 6.431 14 O -0.269 6.269 15 C 0.023 3.977 16 C -0.038 4.038 17 C -0.158 4.158 18 C 0.104 3.896 19 F -0.110 7.110 20 C -0.193 4.193 21 C 0.104 3.896 22 F -0.110 7.110 23 C -0.157 4.157 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.173 0.827 31 H 0.189 0.811 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.982 7.007 22.185 23.793 hybrid contribution 1.143 -1.919 0.912 2.413 sum -3.839 5.088 23.097 23.960 Atomic orbital electron populations 1.21966 0.93491 1.01807 1.02320 1.19225 0.96332 0.97797 0.87069 0.90042 1.22131 1.39659 1.09650 0.92304 0.95727 1.27430 0.96418 1.06823 0.91066 1.70943 1.38197 1.16913 1.31407 0.83515 0.77111 0.71077 0.77291 1.17853 1.16169 1.21922 1.24428 0.76142 0.82422 0.84520 1.90535 1.37399 1.27879 1.87301 1.86598 1.70027 1.55663 1.14572 1.21896 0.99942 0.95313 0.80550 1.18963 0.94335 0.96288 0.94214 1.21286 1.02609 0.96637 0.95242 1.17180 0.90438 0.88962 0.93043 1.91546 1.75287 1.60157 1.84018 1.21267 0.94679 0.99646 1.03711 1.17178 0.83268 0.96159 0.92998 1.91544 1.45364 1.90092 1.83989 1.21285 0.96865 1.02370 0.95182 0.93626 0.90095 0.92039 0.94066 0.89475 0.89492 0.82736 0.81126 0.82702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 8.75 71.98 0.63 -4.65 16 2 C 0.02 0.69 2.32 -12.28 -0.03 0.67 16 3 H 0.08 3.44 6.64 -2.39 -0.02 3.42 16 4 C -0.60 -34.40 8.72 25.60 0.22 -34.18 16 5 H 0.02 1.63 7.00 -2.91 -0.02 1.61 16 6 C -0.02 -1.17 5.43 84.66 0.46 -0.71 16 7 N -0.94 -59.03 13.70 21.45 0.29 -58.73 16 8 Si 1.09 46.90 25.28 68.60 1.73 48.63 16 9 H -0.25 -9.81 6.82 99.48 0.68 -9.14 16 10 H -0.24 -8.69 6.35 99.48 0.63 -8.06 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 12 C 0.48 20.62 7.25 71.24 0.52 21.14 16 13 O -0.54 -27.05 15.22 21.98 0.33 -26.72 16 14 O -0.35 -11.73 10.01 -51.39 -0.51 -12.25 16 15 C 0.10 2.50 5.59 71.24 0.40 2.90 16 16 C -0.04 -0.78 5.52 -19.88 -0.11 -0.89 16 17 C -0.14 -2.62 9.68 22.32 0.22 -2.40 16 18 C 0.12 2.18 7.30 22.37 0.16 2.34 16 19 F -0.13 -2.44 17.27 44.97 0.78 -1.66 16 20 C -0.17 -2.73 10.01 22.36 0.22 -2.50 16 21 C 0.12 2.17 7.30 22.37 0.16 2.33 16 22 F -0.13 -2.42 17.27 44.97 0.78 -1.65 16 23 C -0.14 -2.59 9.68 22.32 0.22 -2.37 16 24 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.08 2.47 7.99 -2.39 -0.02 2.45 16 26 H 0.06 2.27 4.41 -2.39 -0.01 2.26 16 27 H 0.25 16.24 8.72 -92.71 -0.81 15.43 16 28 H 0.09 2.19 8.08 -2.39 -0.02 2.17 16 29 H 0.09 2.19 8.07 -2.39 -0.02 2.17 16 30 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 31 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -69.20 289.79 7.49 -61.71 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.02 Total: 8.98 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 3.07 Total: -18.31 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.29 Total: -58.73 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.18 Total: -38.97 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 1.55 Total: -3.31 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.73 Total: 48.63 kcal Total: -69.20 7.49 -61.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261591622.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.735 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds