Wall clock time and date at job start Mon Mar 30 2020 01:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.20826 * 120.00132 * 239.99872 * 12 2 1 14 14 O 1.34230 * 120.00143 * 60.00078 * 12 2 1 15 15 C 1.45197 * 116.99857 * 180.02562 * 14 12 2 16 16 C 1.50703 * 109.46840 * 179.97438 * 15 14 12 17 17 C 1.38209 * 119.97615 * 269.72004 * 16 15 14 18 18 C 1.38472 * 120.02360 * 179.76714 * 17 16 15 19 19 F 1.35101 * 120.01176 * 180.27611 * 18 17 16 20 20 C 1.38427 * 119.97604 * 0.53445 * 18 17 16 21 21 C 1.38421 * 119.94767 * 359.72001 * 20 18 17 22 22 F 1.35098 * 120.00882 * 179.97438 * 21 20 18 23 23 C 1.38215 * 119.97373 * 90.00096 * 16 15 14 24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 25 25 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47025 * 299.99530 * 15 14 12 29 29 H 1.08997 * 109.47133 * 60.00074 * 15 14 12 30 30 H 1.07997 * 119.98901 * 0.02562 * 17 16 15 31 31 H 1.07992 * 120.02245 * 179.74461 * 20 18 17 32 32 H 1.08002 * 119.98343 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 6 2.0323 -0.7103 -1.2306 13 8 2.7270 -1.6927 -1.1198 14 8 1.7081 -0.2516 -2.4497 15 6 2.2268 -0.9861 -3.5897 16 6 1.7619 -0.3294 -4.8640 17 6 0.5741 -0.7237 -5.4505 18 6 0.1436 -0.1176 -6.6188 19 9 -1.0202 -0.4993 -7.1889 20 6 0.9088 0.8758 -7.2052 21 6 2.1008 1.2662 -6.6197 22 9 2.8488 2.2352 -7.1912 23 6 2.5265 0.6627 -5.4484 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7006 1.1552 3.4844 28 1 3.3163 -0.9858 -3.5570 29 1 1.8625 -2.0129 -3.5567 30 1 -0.0205 -1.5018 -4.9953 31 1 0.5758 1.3461 -8.1185 32 1 3.4565 0.9671 -4.9913 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261591623.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:45 Heat of formation + Delta-G solvation = -174.670775 kcal Electronic energy + Delta-G solvation = -19639.233024 eV Core-core repulsion = 16007.171205 eV Total energy + Delta-G solvation = -3632.061818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.08497 -50.06478 -41.44875 -40.00827 -37.44080 -35.91531 -33.34813 -32.48720 -31.45726 -28.09463 -27.26185 -24.93332 -23.97768 -22.94763 -21.63344 -19.08077 -18.58993 -18.39110 -18.03107 -17.48366 -17.41094 -17.14058 -17.02528 -16.59660 -16.37484 -16.14236 -15.40905 -14.86587 -14.78954 -14.42036 -13.94884 -13.65704 -13.40432 -13.06401 -13.04395 -12.94482 -12.75265 -12.60002 -12.45617 -12.27919 -12.05429 -11.67345 -11.09462 -11.08588 -10.53282 -10.14531 -9.86658 -8.19202 -6.32409 -0.28597 -0.14596 1.41456 1.44194 1.44826 1.56645 1.77162 2.37219 2.49857 2.72325 3.11226 3.20188 3.32816 3.69008 3.87013 3.96611 4.09789 4.21873 4.38358 4.53368 4.66493 4.70567 4.87603 4.88843 4.91411 5.00800 5.15595 5.36908 5.46314 5.62808 5.70107 5.89805 6.11434 6.74713 7.03416 7.36826 8.87287 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032354 B = 0.003703 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.213476 B = 7560.565604 C = 7778.837892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.049 3.951 3 H 0.052 0.948 4 C -0.537 4.537 5 H 0.058 0.942 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.274 1.274 12 C 0.476 3.524 13 O -0.539 6.539 14 O -0.357 6.357 15 C 0.096 3.904 16 C -0.038 4.038 17 C -0.139 4.139 18 C 0.123 3.877 19 F -0.131 7.131 20 C -0.174 4.174 21 C 0.123 3.877 22 F -0.132 7.132 23 C -0.140 4.140 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.030 0.970 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.155 0.845 31 H 0.171 0.829 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 0.299 -18.613 18.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.076 0.924 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.200 1.200 11 H -0.199 1.199 12 C 0.322 3.678 13 O -0.428 6.428 14 O -0.275 6.275 15 C 0.022 3.978 16 C -0.038 4.038 17 C -0.158 4.158 18 C 0.103 3.897 19 F -0.110 7.110 20 C -0.194 4.194 21 C 0.103 3.897 22 F -0.110 7.110 23 C -0.159 4.159 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.173 0.827 31 H 0.189 0.811 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.657 0.137 -18.534 18.546 hybrid contribution 0.317 -0.338 0.624 0.777 sum -0.340 -0.201 -17.910 17.914 Atomic orbital electron populations 1.21566 0.94383 0.99988 1.01977 1.18704 0.95913 0.96243 0.86174 0.93062 1.21297 1.32453 1.13328 0.90432 0.92388 1.25628 0.94883 0.95653 1.01579 1.69965 1.36672 1.23496 1.24662 0.85429 0.78335 0.78557 0.78891 1.19990 1.19992 1.19925 1.24794 0.76010 0.82543 0.84489 1.90492 1.37357 1.27648 1.87279 1.86631 1.70145 1.55820 1.14870 1.21899 0.99972 0.95344 0.80548 1.19019 0.94348 0.96184 0.94289 1.21291 0.96872 1.02424 0.95217 1.17185 0.83245 0.96166 0.93067 1.91543 1.45319 1.90095 1.84030 1.21258 0.94658 0.99706 1.03749 1.17183 0.90489 0.88988 0.93021 1.91542 1.75304 1.60182 1.83973 1.21295 1.02695 0.96679 0.95192 0.90503 0.93298 0.95062 0.92301 0.89320 0.89324 0.82725 0.81104 0.82751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.90 71.98 0.64 -4.95 16 2 C 0.05 2.43 2.74 -12.29 -0.03 2.40 16 3 H 0.05 2.68 8.14 -2.38 -0.02 2.66 16 4 C -0.54 -29.92 8.38 25.60 0.21 -29.70 16 5 H 0.06 3.39 6.76 -2.91 -0.02 3.37 16 6 C 0.02 1.22 5.30 84.65 0.45 1.66 16 7 N -0.91 -49.85 11.31 21.45 0.24 -49.61 16 8 Si 0.96 43.19 29.54 68.60 2.03 45.21 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 C 0.48 21.41 7.25 71.24 0.52 21.93 16 13 O -0.54 -26.36 15.21 21.96 0.33 -26.03 16 14 O -0.36 -13.07 10.11 -51.42 -0.52 -13.59 16 15 C 0.10 2.64 5.59 71.24 0.40 3.04 16 16 C -0.04 -0.86 5.52 -19.88 -0.11 -0.97 16 17 C -0.14 -2.88 9.68 22.32 0.22 -2.66 16 18 C 0.12 2.38 7.30 22.37 0.16 2.54 16 19 F -0.13 -2.63 17.27 44.97 0.78 -1.85 16 20 C -0.17 -3.03 10.01 22.36 0.22 -2.81 16 21 C 0.12 2.38 7.30 22.37 0.16 2.55 16 22 F -0.13 -2.64 17.27 44.97 0.78 -1.86 16 23 C -0.14 -2.90 9.68 22.32 0.22 -2.68 16 24 H 0.08 3.86 6.06 -2.38 -0.01 3.85 16 25 H 0.05 1.95 8.11 -2.38 -0.02 1.93 16 26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 28 H 0.09 2.32 8.08 -2.39 -0.02 2.30 16 29 H 0.09 2.32 8.07 -2.39 -0.02 2.30 16 30 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 31 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 32 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -60.62 295.50 7.84 -52.77 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.15 Total: 4.60 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 3.06 Total: -9.65 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.24 Total: -49.61 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.19 Total: -39.61 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 1.55 Total: -3.72 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -60.62 7.84 -52.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261591623.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.897 kcal (2) G-P(sol) polarization free energy of solvation -60.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds