Wall clock time and date at job start Mon Mar 30 2020 01:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47440 * 2 1 4 4 N 1.46510 * 109.47048 * 119.99766 * 2 1 3 5 5 C 1.46499 * 119.99988 * 117.32795 * 4 2 1 6 6 C 1.50696 * 109.47312 * 91.85003 * 5 4 2 7 7 H 1.07998 * 120.00022 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99943 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99863 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 119.99978 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47476 * 89.99767 * 10 8 6 12 12 H 1.48506 * 109.47148 * 209.99801 * 10 8 6 13 13 H 1.48501 * 109.47312 * 329.99581 * 10 8 6 14 14 C 1.34777 * 119.99689 * 297.32573 * 4 2 1 15 15 O 1.21708 * 120.00319 * 5.93852 * 14 4 2 16 16 C 1.46553 * 119.99443 * 185.93193 * 14 4 2 17 17 C 1.37937 * 126.22630 * 187.40571 * 16 14 4 18 18 C 1.39747 * 107.11874 * 179.97438 * 17 16 14 19 19 C 1.35667 * 107.88696 * 359.97438 * 18 17 16 20 20 Cl 1.73596 * 125.57341 * 180.02562 * 19 18 17 21 21 N 1.35579 * 108.84539 * 359.76847 * 19 18 17 22 22 H 0.96995 * 125.69259 * 180.23042 * 21 19 18 23 23 H 1.08998 * 109.46927 * 297.17322 * 1 2 3 24 24 H 1.08999 * 109.46644 * 57.17891 * 1 2 3 25 25 H 1.09000 * 109.46899 * 177.17274 * 1 2 3 26 26 H 1.09005 * 109.47514 * 239.99428 * 2 1 3 27 27 H 1.08993 * 109.46992 * 184.47582 * 3 2 1 28 28 H 1.09000 * 109.46644 * 304.47144 * 3 2 1 29 29 H 1.08998 * 109.47240 * 64.47365 * 3 2 1 30 30 H 1.08997 * 109.47049 * 211.85454 * 5 4 2 31 31 H 1.09006 * 109.46902 * 331.85058 * 5 4 2 32 32 H 0.96991 * 119.99649 * 180.02562 * 9 8 6 33 33 H 1.07991 * 126.43971 * 359.96316 * 17 16 14 34 34 H 1.08001 * 126.05669 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1963 5 6 2.8117 -1.9150 1.0627 6 6 4.2764 -1.5628 1.0243 7 1 4.5855 -0.5303 1.0930 8 6 5.2219 -2.5589 0.9026 9 7 6.5003 -2.2516 0.8696 10 14 4.6873 -4.3448 0.7845 11 1 4.4828 -4.7072 -0.6410 12 1 5.7375 -5.2158 1.3710 13 1 3.4164 -4.5314 1.5298 14 6 1.7378 -0.1994 2.4196 15 8 0.9903 0.7540 2.5359 16 6 2.3327 -0.8136 3.6098 17 6 2.0279 -0.5130 4.9211 18 6 2.8249 -1.3308 5.7266 19 6 3.5875 -2.1022 4.9117 20 17 4.7448 -3.2860 5.4341 21 7 3.2938 -1.8012 3.6228 22 1 3.6951 -2.2108 2.8405 23 1 -0.3633 0.4693 0.9142 24 1 -0.3632 0.5570 -0.8636 25 1 -0.3633 -1.0264 -0.0507 26 1 1.8934 -0.5139 -0.8899 27 1 3.1271 1.4435 -0.0802 28 1 1.6128 1.9789 -0.8472 29 1 1.7437 1.9327 0.9273 30 1 2.6172 -2.5684 1.9131 31 1 2.5368 -2.4272 0.1406 32 1 7.1654 -2.9523 0.7836 33 1 1.3086 0.2172 5.2612 34 1 2.8319 -1.3466 6.8064 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263723676.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:50 Heat of formation + Delta-G solvation = 1.074828 kcal Electronic energy + Delta-G solvation = -19414.641464 eV Core-core repulsion = 16374.289979 eV Total energy + Delta-G solvation = -3040.351486 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.49721 -40.45331 -37.67909 -37.35159 -35.33440 -33.72975 -31.90355 -30.17165 -29.39663 -28.04538 -25.02157 -23.98572 -22.37264 -21.28608 -20.83244 -19.29058 -18.57677 -17.49775 -16.93035 -16.57048 -16.01700 -15.28671 -15.23096 -15.16945 -14.84688 -14.50897 -14.20117 -13.98023 -13.71719 -13.50774 -13.45804 -12.91908 -12.81706 -12.73228 -12.58359 -12.34912 -12.25152 -12.08581 -11.90116 -11.83008 -11.02782 -10.70358 -10.05240 -9.62578 -9.09713 -8.51959 -6.63972 0.41752 0.69803 1.22491 1.25803 1.31944 1.58778 2.07601 2.10888 2.36221 2.56644 2.81383 3.60513 4.09611 4.20746 4.25001 4.28733 4.37534 4.40010 4.57802 4.77324 4.82455 4.91205 4.91898 4.98986 5.09921 5.13419 5.25521 5.40706 5.59835 5.73958 5.88917 5.97743 6.32872 6.44757 6.52663 6.98844 7.18838 8.62342 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.014604 B = 0.010234 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.813043 B = 2735.240980 C = 4138.515159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 C -0.159 4.159 4 N -0.592 5.592 5 C 0.196 3.804 6 C -0.558 4.558 7 H 0.041 0.959 8 C 0.039 3.961 9 N -0.910 5.910 10 Si 0.902 3.098 11 H -0.249 1.249 12 H -0.271 1.271 13 H -0.243 1.243 14 C 0.587 3.413 15 O -0.559 6.559 16 C -0.057 4.057 17 C -0.115 4.115 18 C -0.177 4.177 19 C 0.059 3.941 20 Cl -0.020 7.020 21 N -0.525 5.525 22 H 0.436 0.564 23 H 0.059 0.941 24 H 0.087 0.913 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.034 0.966 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.276 0.724 33 H 0.169 0.831 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.344 -2.050 3.623 9.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.035 3.965 3 C -0.217 4.217 4 N -0.322 5.322 5 C 0.073 3.927 6 C -0.597 4.597 7 H 0.060 0.940 8 C -0.165 4.165 9 N -0.546 5.546 10 Si 0.723 3.277 11 H -0.173 1.173 12 H -0.196 1.196 13 H -0.167 1.167 14 C 0.377 3.623 15 O -0.440 6.440 16 C -0.173 4.173 17 C -0.142 4.142 18 C -0.202 4.202 19 C -0.086 4.086 20 Cl 0.009 6.991 21 N -0.137 5.137 22 H 0.292 0.708 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.075 0.925 26 H 0.112 0.888 27 H 0.053 0.947 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.187 0.813 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.350 -1.828 3.434 9.211 hybrid contribution 1.070 -1.075 -0.536 1.609 sum -7.280 -2.903 2.898 8.356 Atomic orbital electron populations 1.22139 0.93460 1.02295 1.03584 1.21217 0.95278 0.93320 0.86636 1.22084 1.00050 0.96231 1.03293 1.47977 1.51753 1.26796 1.05656 1.20040 0.90140 0.83922 0.98598 1.21446 0.90122 0.94857 1.53228 0.94024 1.25666 0.94599 1.02963 0.93239 1.69982 1.01545 1.35604 1.47519 0.86378 0.80004 0.80074 0.81232 1.17284 1.19613 1.16659 1.17124 0.80301 0.82656 0.82214 1.90665 1.38263 1.28604 1.86431 1.20720 1.00487 0.99497 0.96555 1.21454 1.02074 1.01610 0.89032 1.20919 0.99603 0.99125 1.00553 1.21569 1.00390 1.00494 0.86193 1.98358 1.57383 1.55143 1.88242 1.44278 1.30856 1.29830 1.08690 0.70751 0.92172 0.89401 0.92522 0.88830 0.94671 0.89197 0.92486 0.94917 0.92352 0.91424 0.81338 0.80121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.52 9.20 71.98 0.66 -3.85 16 2 C 0.14 4.73 3.27 44.99 0.15 4.88 16 3 C -0.16 -5.43 9.15 71.98 0.66 -4.77 16 4 N -0.59 -24.01 2.41 -806.93 -1.94 -25.96 16 5 C 0.20 8.36 3.73 85.63 0.32 8.68 16 6 C -0.56 -28.20 7.91 25.60 0.20 -28.00 16 7 H 0.04 2.47 8.06 -2.91 -0.02 2.44 16 8 C 0.04 1.99 5.17 84.65 0.44 2.43 16 9 N -0.91 -50.53 13.96 21.45 0.30 -50.23 16 10 Si 0.90 37.09 27.08 68.60 1.86 38.94 16 11 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 12 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 13 H -0.24 -9.23 6.54 99.48 0.65 -8.58 16 14 C 0.59 24.81 7.01 86.41 0.61 25.42 16 15 O -0.56 -24.00 13.09 -4.37 -0.06 -24.05 16 16 C -0.06 -2.35 6.63 40.30 0.27 -2.08 16 17 C -0.12 -3.98 10.66 22.56 0.24 -3.74 16 18 C -0.18 -5.56 10.78 22.04 0.24 -5.32 16 19 C 0.06 2.14 7.74 83.52 0.65 2.79 16 20 Cl -0.02 -0.64 29.30 -2.72 -0.08 -0.72 16 21 N -0.53 -21.99 4.83 -174.61 -0.84 -22.83 16 22 H 0.44 19.49 2.91 -92.71 -0.27 19.22 16 23 H 0.06 1.98 6.09 -2.39 -0.01 1.97 16 24 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 26 H 0.09 3.03 7.79 -2.38 -0.02 3.01 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.06 2.16 6.06 -2.39 -0.01 2.14 16 30 H 0.03 1.42 4.31 -2.39 -0.01 1.41 16 31 H 0.06 2.29 7.33 -2.38 -0.02 2.27 16 32 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.17 5.04 8.06 -2.92 -0.02 5.01 16 34 H 0.18 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -58.42 292.20 4.46 -53.96 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.80 Total: 34.46 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 4.42 Total: -3.58 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -2.49 Total: -99.01 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.06 Total: -24.05 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 1.86 Total: 38.94 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -58.42 4.46 -53.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263723676.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.038 kcal (2) G-P(sol) polarization free energy of solvation -58.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds