Wall clock time and date at job start Mon Mar 30 2020 01:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.46502 * 119.99711 * 60.00297 * 12 2 1 14 14 C 1.34769 * 120.00163 * 240.00131 * 12 2 1 15 15 O 1.21279 * 120.00303 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99833 * 179.97438 * 14 12 2 17 17 C 1.50708 * 109.47205 * 180.02562 * 16 14 12 18 18 N 1.29320 * 126.06522 * 89.68614 * 17 16 14 19 19 N 1.26097 * 117.96407 * 179.75992 * 18 17 16 20 20 C 1.30242 * 117.62638 * 0.55837 * 19 18 17 21 21 N 1.38698 * 126.16852 * 179.70695 * 20 19 18 22 22 S 1.76480 * 126.06402 * 270.00428 * 17 16 14 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 27 27 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 28 28 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 29 29 H 1.09002 * 109.46792 * 329.99948 * 13 12 2 30 30 H 1.09000 * 109.47080 * 299.99533 * 16 14 12 31 31 H 1.08993 * 109.47251 * 60.00389 * 16 14 12 32 32 H 0.97000 * 119.99742 * 179.97438 * 21 20 19 33 33 H 0.97003 * 120.00156 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0832 15 8 3.0858 1.1256 1.8917 16 6 3.2951 -0.7460 3.3139 17 6 4.1320 0.2013 4.1346 18 7 3.7001 0.9857 5.0676 19 7 4.5392 1.7151 5.6625 20 6 5.7835 1.6345 5.2862 21 7 6.8458 2.3552 5.8113 22 16 5.8740 0.4427 3.9875 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 0.7093 1.1619 -3.4844 27 1 2.4158 -2.7377 0.9716 28 1 1.6239 -2.2853 2.5001 29 1 0.6905 -2.3002 0.9845 30 1 2.4471 -1.0881 3.9072 31 1 3.9005 -1.6025 3.0176 32 1 7.7411 2.2234 5.4620 33 1 6.6936 2.9906 6.5283 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263726919.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:27 Heat of formation + Delta-G solvation = 33.819146 kcal Electronic energy + Delta-G solvation = -18285.224398 eV Core-core repulsion = 15280.629271 eV Total energy + Delta-G solvation = -3004.595128 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.76381 -39.04980 -35.56185 -35.20839 -33.01476 -32.02736 -29.53361 -27.85084 -26.13067 -25.21512 -24.80935 -21.54415 -20.13893 -19.43694 -18.36727 -16.94817 -16.71084 -16.47179 -16.08228 -15.43436 -15.02622 -14.75973 -14.30217 -13.75825 -13.02625 -12.89033 -12.69330 -12.55138 -11.89711 -11.70100 -11.52225 -11.46495 -11.05481 -10.81806 -10.68753 -10.35612 -10.25851 -10.15593 -9.93512 -9.48177 -9.18064 -9.02553 -8.42584 -8.28679 -7.60817 -6.06374 -4.14757 0.68239 0.81903 1.39878 2.83715 3.18511 3.27806 3.30761 3.33484 3.36492 3.92226 4.37768 4.45157 4.98283 5.11783 5.24155 5.26373 5.47296 5.70125 5.79181 6.05715 6.28970 6.58452 6.78366 6.84266 7.05869 7.06789 7.42069 7.52068 7.71715 8.02094 8.19650 8.50163 8.82471 8.88192 9.01401 9.51611 10.98883 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030288 B = 0.004480 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.223759 B = 6249.065014 C = 6523.542592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.591 5.591 13 C 0.083 3.917 14 C 0.508 3.492 15 O -0.542 6.542 16 C -0.059 4.059 17 C 0.044 3.956 18 N -0.222 5.222 19 N -0.341 5.341 20 C 0.291 3.709 21 N -0.808 5.808 22 S 0.046 5.954 23 H 0.012 0.988 24 H 0.031 0.969 25 H 0.094 0.906 26 H 0.264 0.736 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.417 0.583 33 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 -4.483 13.694 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.322 5.322 13 C -0.061 4.061 14 C 0.292 3.708 15 O -0.420 6.420 16 C -0.103 4.103 17 C -0.242 4.242 18 N -0.055 5.055 19 N -0.188 5.188 20 C -0.083 4.083 21 N -0.361 5.361 22 S 0.282 5.718 23 H 0.032 0.968 24 H 0.050 0.950 25 H 0.112 0.888 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.141 0.859 31 H 0.130 0.870 32 H 0.248 0.752 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 9.266 -3.603 13.626 16.868 hybrid contribution 0.684 -0.318 -0.846 1.134 sum 9.950 -3.921 12.780 16.665 Atomic orbital electron populations 1.22098 0.98146 0.99403 1.00955 1.18960 0.90922 0.94533 0.79745 0.91866 1.21273 1.31933 1.13007 0.90265 0.92296 1.24891 0.94955 0.94972 0.98951 1.69869 1.36277 1.22547 1.23869 0.86555 0.79200 0.79578 0.82033 1.20213 1.21192 1.20285 1.48206 1.48786 1.11743 1.23471 1.21626 1.01954 0.83060 0.99482 1.19963 0.79844 0.87188 0.83780 1.90691 1.58072 1.16775 1.76458 1.20250 0.99416 0.95912 0.94744 1.28503 0.91702 1.03348 1.00613 1.70631 1.26082 1.02546 1.06244 1.71329 0.96359 1.23651 1.27447 1.26718 0.92103 0.95426 0.94036 1.41285 1.06187 1.45835 1.42812 1.85756 1.11068 1.39429 1.35575 0.96844 0.95035 0.88800 0.92622 0.93073 0.92765 0.90605 0.85940 0.86974 0.75233 0.75214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.95 37.16 0.33 -3.20 16 2 C 0.26 6.58 2.64 -69.08 -0.18 6.39 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.06 8.37 -34.44 -0.29 -14.35 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.59 -12.31 2.75 -175.26 -0.48 -12.79 16 13 C 0.08 1.30 9.48 59.85 0.57 1.86 16 14 C 0.51 10.42 7.67 -10.99 -0.08 10.34 16 15 O -0.54 -13.61 15.36 5.56 0.09 -13.53 16 16 C -0.06 -0.87 4.88 -29.03 -0.14 -1.01 16 17 C 0.04 0.72 6.28 -13.33 -0.08 0.64 16 18 N -0.22 -4.02 11.55 33.57 0.39 -3.63 16 19 N -0.34 -5.74 11.61 31.00 0.36 -5.38 16 20 C 0.29 3.88 9.05 -87.14 -0.79 3.10 16 21 N -0.81 -6.60 9.08 30.97 0.28 -6.32 16 22 S 0.05 0.63 23.54 -107.50 -2.53 -1.90 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 24 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.63 6.44 -51.92 -0.33 0.30 16 29 H 0.08 1.22 6.43 -51.93 -0.33 0.89 16 30 H 0.12 1.52 7.40 -51.93 -0.38 1.13 16 31 H 0.11 1.30 8.11 -51.93 -0.42 0.88 16 32 H 0.42 2.16 8.95 -40.82 -0.37 1.80 16 33 H 0.42 2.70 8.95 -40.82 -0.37 2.33 16 LS Contribution 296.85 15.07 4.47 4.47 Total: -1.00 -34.76 296.85 -6.19 -40.95 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -3.61 Total: 1.34 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -0.76 Total: 5.43 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 1.17 Total: -52.61 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.53 Total: -1.90 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.76 -6.19 -40.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263726919.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.767 kcal (2) G-P(sol) polarization free energy of solvation -34.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds