Wall clock time and date at job start Mon Mar 30 2020 01:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.46502 * 119.99711 * 60.00297 * 12 2 1 14 14 C 1.34769 * 120.00163 * 240.00131 * 12 2 1 15 15 O 1.21279 * 120.00303 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99833 * 179.97438 * 14 12 2 17 17 C 1.50708 * 109.47205 * 180.02562 * 16 14 12 18 18 N 1.29320 * 126.06522 * 89.68614 * 17 16 14 19 19 N 1.26097 * 117.96407 * 179.75992 * 18 17 16 20 20 C 1.30242 * 117.62638 * 0.55837 * 19 18 17 21 21 N 1.38698 * 126.16852 * 179.70695 * 20 19 18 22 22 S 1.76480 * 126.06402 * 270.00428 * 17 16 14 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 27 27 H 1.08993 * 109.47565 * 90.00263 * 13 12 2 28 28 H 1.09007 * 109.46761 * 210.00296 * 13 12 2 29 29 H 1.09002 * 109.46792 * 329.99948 * 13 12 2 30 30 H 1.09000 * 109.47080 * 299.99533 * 16 14 12 31 31 H 1.08993 * 109.47251 * 60.00389 * 16 14 12 32 32 H 0.97000 * 119.99742 * 179.97438 * 21 20 19 33 33 H 0.97003 * 120.00156 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0832 15 8 3.0858 1.1256 1.8917 16 6 3.2951 -0.7460 3.3139 17 6 4.1320 0.2013 4.1346 18 7 3.7001 0.9857 5.0676 19 7 4.5392 1.7151 5.6625 20 6 5.7835 1.6345 5.2862 21 7 6.8458 2.3552 5.8113 22 16 5.8740 0.4427 3.9875 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 0.7093 1.1619 -3.4844 27 1 2.4158 -2.7377 0.9716 28 1 1.6239 -2.2853 2.5001 29 1 0.6905 -2.3002 0.9845 30 1 2.4471 -1.0881 3.9072 31 1 3.9005 -1.6025 3.0176 32 1 7.7411 2.2234 5.4620 33 1 6.6936 2.9906 6.5283 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263726919.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:26 Heat of formation + Delta-G solvation = 7.361317 kcal Electronic energy + Delta-G solvation = -18286.371696 eV Core-core repulsion = 15280.629271 eV Total energy + Delta-G solvation = -3005.742425 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.91949 -40.64316 -37.17733 -36.29466 -34.84294 -33.36837 -31.28375 -29.09372 -27.54336 -27.24245 -25.98035 -23.21431 -21.38917 -20.50249 -19.92037 -18.50512 -18.07688 -17.85973 -17.30368 -16.93915 -16.45838 -16.24848 -15.93110 -15.04438 -14.65352 -14.33501 -14.10352 -13.99230 -13.43364 -13.21145 -12.92246 -12.87872 -12.70517 -12.64896 -12.53788 -12.13909 -12.10227 -11.48511 -11.15855 -11.05816 -10.77765 -10.51374 -10.42931 -9.30197 -9.29751 -8.11301 -6.28182 -0.39369 -0.23617 0.29157 1.44042 1.46383 1.53690 1.66518 1.79678 2.29023 2.38239 2.55211 3.16737 3.30271 3.77816 3.97055 4.20438 4.39259 4.57628 4.67222 4.76540 4.87789 4.92186 5.09068 5.14547 5.49500 5.64991 5.70327 5.79346 6.06195 6.18896 6.44835 6.80099 6.83896 7.33646 7.49534 7.75924 8.92898 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030288 B = 0.004480 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.223759 B = 6249.065014 C = 6523.542592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.261 3.739 3 H 0.005 0.995 4 C -0.536 4.536 5 H 0.065 0.935 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.965 3.035 9 H -0.260 1.260 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.597 5.597 13 C 0.075 3.925 14 C 0.499 3.501 15 O -0.600 6.600 16 C -0.045 4.045 17 C 0.017 3.983 18 N -0.250 5.250 19 N -0.381 5.381 20 C 0.296 3.704 21 N -0.780 5.780 22 S 0.074 5.926 23 H 0.017 0.983 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.263 0.737 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.433 0.567 33 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.841 -6.678 14.422 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.023 0.977 4 C -0.574 4.574 5 H 0.083 0.917 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.790 3.210 9 H -0.185 1.185 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.328 5.328 13 C -0.066 4.066 14 C 0.286 3.714 15 O -0.482 6.482 16 C -0.088 4.088 17 C -0.269 4.269 18 N -0.084 5.084 19 N -0.228 5.228 20 C -0.080 4.080 21 N -0.336 5.336 22 S 0.310 5.690 23 H 0.036 0.964 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.169 0.831 31 H 0.169 0.831 32 H 0.267 0.733 33 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 10.690 -5.830 14.396 18.855 hybrid contribution 0.360 0.453 -1.010 1.163 sum 11.050 -5.377 13.387 18.172 Atomic orbital electron populations 1.21889 0.97269 1.00277 0.99794 1.18525 0.91553 0.92171 0.81825 0.97656 1.21563 1.31835 1.13079 0.90937 0.91654 1.25761 0.95110 0.95630 1.02130 1.70031 1.37468 1.24024 1.24397 0.85504 0.78416 0.79028 0.78029 1.18497 1.21265 1.20177 1.48192 1.48737 1.13683 1.22138 1.21957 1.01936 0.79915 1.02837 1.20937 0.78824 0.86721 0.84925 1.90658 1.60053 1.19563 1.77953 1.20272 1.00914 0.95835 0.91807 1.28732 0.93420 1.03855 1.00926 1.70554 1.27464 1.03119 1.07230 1.71238 0.97571 1.25042 1.28993 1.26939 0.92263 0.95170 0.93588 1.41396 1.05796 1.44305 1.42054 1.85532 1.09050 1.39242 1.35201 0.96361 0.92968 0.91570 0.92764 0.91780 0.88020 0.91124 0.83092 0.83108 0.73252 0.73928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.50 8.95 71.98 0.64 -5.86 16 2 C 0.26 13.61 2.64 44.25 0.12 13.73 16 3 H 0.01 0.34 6.90 -2.39 -0.02 0.33 16 4 C -0.54 -28.73 8.37 25.60 0.21 -28.52 16 5 H 0.07 3.33 7.65 -2.91 -0.02 3.31 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.45 11.32 21.45 0.24 -53.21 16 8 Si 0.97 42.62 29.54 68.60 2.03 44.64 16 9 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 N -0.60 -24.46 2.75 -826.80 -2.28 -26.74 16 13 C 0.08 2.14 9.48 127.77 1.21 3.35 16 14 C 0.50 20.28 7.67 87.66 0.67 20.95 16 15 O -0.60 -31.16 15.36 -3.03 -0.05 -31.21 16 16 C -0.04 -1.22 4.88 29.10 0.14 -1.08 16 17 C 0.02 0.54 6.28 88.48 0.56 1.10 16 18 N -0.25 -8.98 11.55 -47.71 -0.55 -9.53 16 19 N -0.38 -12.62 11.61 -55.84 -0.65 -13.26 16 20 C 0.30 7.47 9.05 179.13 1.62 9.09 16 21 N -0.78 -11.00 9.08 -55.92 -0.51 -11.51 16 22 S 0.07 1.89 23.54 -56.49 -1.33 0.56 16 23 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.05 2.26 6.66 -2.39 -0.02 2.24 16 25 H 0.07 3.59 6.07 -2.38 -0.01 3.58 16 26 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.10 1.92 6.44 -2.38 -0.02 1.90 16 29 H 0.07 2.09 6.43 -2.39 -0.02 2.07 16 30 H 0.15 3.21 7.40 -2.39 -0.02 3.19 16 31 H 0.15 2.88 8.11 -2.39 -0.02 2.86 16 32 H 0.43 3.29 8.95 -92.71 -0.83 2.46 16 33 H 0.43 4.58 8.95 -92.71 -0.83 3.75 16 Total: -1.00 -79.77 296.85 2.05 -77.71 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -0.49 Total: 8.62 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 5.63 Total: 13.92 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -3.74 Total: -114.26 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.05 Total: -31.21 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.33 Total: 0.56 kcal Total: -79.77 2.05 -77.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263726919.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.076 kcal (2) G-P(sol) polarization free energy of solvation -79.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds