Wall clock time and date at job start Mon Mar 30 2020 01:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47049 * 2 1 4 4 C 1.52992 * 109.47580 * 120.00460 * 2 1 3 5 5 C 1.52997 * 109.47430 * 184.99788 * 4 2 1 6 6 N 1.46497 * 109.47282 * 179.97438 * 5 4 2 7 7 C 1.34782 * 120.00148 * 179.97438 * 6 5 4 8 8 O 1.21622 * 119.99653 * 0.02562 * 7 6 5 9 9 C 1.47171 * 120.00184 * 180.02562 * 7 6 5 10 10 C 1.38241 * 128.47609 * 179.97438 * 9 7 6 11 11 N 1.31242 * 111.88701 * 179.73439 * 10 9 7 12 12 N 1.27337 * 120.04085 * 0.24773 * 11 10 9 13 13 S 1.56636 * 109.73928 * 359.97438 * 12 11 10 14 14 N 1.46506 * 109.46904 * 240.00543 * 2 1 3 15 15 C 1.36939 * 120.00070 * 84.99733 * 14 2 1 16 16 H 1.08001 * 119.99776 * 359.97438 * 15 14 2 17 17 C 1.38812 * 119.99987 * 179.97438 * 15 14 2 18 18 N 1.31617 * 119.99755 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99998 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47335 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47183 * 120.00151 * 19 17 15 22 22 H 1.48498 * 109.47059 * 240.00209 * 19 17 15 23 23 H 1.09010 * 109.46625 * 299.99476 * 1 2 3 24 24 H 1.08992 * 109.47267 * 59.99313 * 1 2 3 25 25 H 1.08997 * 109.47049 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47423 * 64.99486 * 4 2 1 27 27 H 1.09001 * 109.46913 * 305.00051 * 4 2 1 28 28 H 1.09004 * 109.46949 * 60.00435 * 5 4 2 29 29 H 1.09001 * 109.47287 * 300.00034 * 5 4 2 30 30 H 0.97005 * 119.99940 * 0.02562 * 6 5 4 31 31 H 1.08002 * 124.05835 * 0.02562 * 10 9 7 32 32 H 0.96994 * 120.00064 * 264.99923 * 14 2 1 33 33 H 0.97002 * 119.99592 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6134 1.3135 6 7 4.0533 -1.3035 2.5099 7 6 5.3742 -1.3397 2.7750 8 8 6.1608 -0.7989 2.0212 9 6 5.8649 -2.0335 3.9766 10 6 7.1682 -2.1783 4.4143 11 7 7.2351 -2.8568 5.5358 12 7 6.1706 -3.2948 6.0803 13 16 4.9288 -2.8891 5.2162 14 7 2.0183 -0.6905 -1.1963 15 6 2.1490 -0.0073 -2.3758 16 1 1.8918 1.0405 -2.4243 17 6 2.6122 -0.6615 -3.5092 18 7 2.9252 -1.9385 -3.4501 19 14 2.7912 0.2707 -5.1180 20 1 2.3761 1.6828 -4.9208 21 1 4.2083 0.2279 -5.5599 22 1 1.9309 -0.3577 -6.1525 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8898 25 1 -0.3633 -1.0276 -0.0005 26 1 1.7517 -1.7716 1.2055 27 1 1.6055 -0.2618 2.1369 28 1 3.8533 0.4369 1.3573 29 1 3.9995 -1.0728 0.4257 30 1 3.4259 -1.7351 3.1108 31 1 8.0277 -1.7771 3.8980 32 1 2.2490 -1.6316 -1.1528 33 1 3.2485 -2.3957 -4.2422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266128019.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:44 Heat of formation + Delta-G solvation = 41.794097 kcal Electronic energy + Delta-G solvation = -17687.563330 eV Core-core repulsion = 14683.314022 eV Total energy + Delta-G solvation = -3004.249308 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.09410 -39.57694 -36.69873 -34.59557 -32.57002 -32.16379 -29.59488 -28.41368 -27.42146 -24.22101 -23.44540 -22.08375 -20.91827 -19.94157 -19.36196 -17.68233 -17.19500 -16.20497 -16.08337 -15.41267 -15.03930 -14.77338 -14.27313 -14.00430 -13.55830 -13.09579 -12.98923 -12.57420 -12.29560 -12.09979 -11.61855 -11.21620 -10.99112 -10.81156 -10.69979 -10.61134 -10.40904 -10.38085 -10.19365 -10.13615 -9.93493 -9.67766 -9.11400 -8.93026 -6.98976 -5.78259 -3.07239 -0.55773 0.49821 1.16986 1.70294 2.83422 2.88393 3.43344 3.49157 3.51244 3.73550 4.41173 4.52883 4.58484 5.15469 5.30085 5.31141 5.49936 5.60034 5.79071 5.97628 6.09522 6.19809 6.28783 6.33753 6.49615 6.61501 6.80636 7.00911 7.22709 7.35933 7.69982 7.93996 8.40018 9.51744 10.07413 10.41833 11.44374 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027904 B = 0.003725 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.191800 B = 7514.194033 C = 8139.928437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.175 3.825 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.121 3.879 6 N -0.717 5.717 7 C 0.594 3.406 8 O -0.509 6.509 9 C -0.276 4.276 10 C 0.070 3.930 11 N -0.251 5.251 12 N -0.259 5.259 13 S 0.416 5.584 14 N -0.724 5.724 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.905 3.095 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.292 1.292 23 H 0.036 0.964 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.396 0.604 31 H 0.217 0.783 32 H 0.383 0.617 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.692 -0.753 18.297 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.173 4.173 5 C -0.001 4.001 6 N -0.368 5.368 7 C 0.376 3.624 8 O -0.385 6.385 9 C -0.418 4.418 10 C -0.096 4.096 11 N -0.116 5.116 12 N -0.241 5.241 13 S 0.551 5.449 14 N -0.366 5.366 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.580 5.580 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.220 1.220 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.229 0.771 31 H 0.233 0.767 32 H 0.217 0.783 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.685 -1.236 19.157 19.209 hybrid contribution 0.573 0.593 -1.765 1.948 sum 1.258 -0.643 17.392 17.450 Atomic orbital electron populations 1.22426 0.99031 1.00888 1.00043 1.20147 0.91965 0.95594 0.85879 0.93171 1.22091 0.93453 1.02089 0.99659 1.21617 0.94820 0.97368 0.86310 1.46030 1.06040 1.56708 1.27988 1.16485 0.83085 0.80054 0.82779 1.90904 1.55211 1.44820 1.47542 1.28214 0.98069 1.10735 1.04749 1.24501 0.97678 0.95961 0.91464 1.70698 1.19436 1.11524 1.09902 1.78882 0.98774 1.21706 1.24695 1.82569 1.20167 1.34325 1.07880 1.42468 1.78124 1.10661 1.05385 1.19262 1.36532 0.93897 0.87315 0.91121 1.24723 1.02068 0.95946 0.98064 1.69661 1.50896 1.08680 1.28804 0.86152 0.77339 0.78817 0.84082 1.20561 1.21856 1.21957 0.94528 0.92663 0.93486 0.91380 0.91691 0.91111 0.89053 0.77057 0.76665 0.78291 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.49 37.16 0.35 -2.33 16 2 C 0.17 3.12 2.89 -67.93 -0.20 2.92 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 C -0.13 -1.83 4.87 -26.74 -0.13 -1.96 16 5 C 0.12 1.79 5.56 -4.05 -0.02 1.77 16 6 N -0.72 -8.48 5.55 -61.47 -0.34 -8.82 16 7 C 0.59 7.95 7.80 -12.63 -0.10 7.85 16 8 O -0.51 -8.94 16.98 5.26 0.09 -8.85 16 9 C -0.28 -2.94 6.81 -35.96 -0.25 -3.18 16 10 C 0.07 0.74 11.55 -17.80 -0.21 0.53 16 11 N -0.25 -2.91 11.54 30.36 0.35 -2.56 16 12 N -0.26 -2.84 12.51 60.35 0.75 -2.09 16 13 S 0.42 3.38 23.05 -107.50 -2.48 0.91 16 14 N -0.72 -16.95 4.57 -53.42 -0.24 -17.20 16 15 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 19 Si 0.90 22.18 29.55 -169.99 -5.02 17.15 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 H 0.04 0.49 8.14 -51.92 -0.42 0.06 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.72 7.75 -51.93 -0.40 1.32 16 30 H 0.40 3.36 7.90 -40.82 -0.32 3.03 16 31 H 0.22 1.85 8.06 -52.49 -0.42 1.42 16 32 H 0.38 9.58 7.80 -40.82 -0.32 9.26 16 33 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 307.12 15.07 4.63 4.63 Total: -1.00 -32.30 307.12 -6.30 -38.60 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -3.97 Total: 6.51 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -0.79 Total: -1.37 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 1.24 Total: -57.57 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -2.48 Total: 0.91 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.30 -6.30 -38.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266128019.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.392 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds