Wall clock time and date at job start Mon Mar 30 2020 01:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47049 * 2 1 4 4 C 1.52992 * 109.47580 * 120.00460 * 2 1 3 5 5 C 1.52997 * 109.47430 * 184.99788 * 4 2 1 6 6 N 1.46497 * 109.47282 * 179.97438 * 5 4 2 7 7 C 1.34782 * 120.00148 * 179.97438 * 6 5 4 8 8 O 1.21622 * 119.99653 * 0.02562 * 7 6 5 9 9 C 1.47171 * 120.00184 * 180.02562 * 7 6 5 10 10 C 1.38241 * 128.47609 * 179.97438 * 9 7 6 11 11 N 1.31242 * 111.88701 * 179.73439 * 10 9 7 12 12 N 1.27337 * 120.04085 * 0.24773 * 11 10 9 13 13 S 1.56636 * 109.73928 * 359.97438 * 12 11 10 14 14 N 1.46506 * 109.46904 * 240.00543 * 2 1 3 15 15 C 1.36939 * 120.00070 * 84.99733 * 14 2 1 16 16 H 1.08001 * 119.99776 * 359.97438 * 15 14 2 17 17 C 1.38812 * 119.99987 * 179.97438 * 15 14 2 18 18 N 1.31617 * 119.99755 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99998 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47335 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47183 * 120.00151 * 19 17 15 22 22 H 1.48498 * 109.47059 * 240.00209 * 19 17 15 23 23 H 1.09010 * 109.46625 * 299.99476 * 1 2 3 24 24 H 1.08992 * 109.47267 * 59.99313 * 1 2 3 25 25 H 1.08997 * 109.47049 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47423 * 64.99486 * 4 2 1 27 27 H 1.09001 * 109.46913 * 305.00051 * 4 2 1 28 28 H 1.09004 * 109.46949 * 60.00435 * 5 4 2 29 29 H 1.09001 * 109.47287 * 300.00034 * 5 4 2 30 30 H 0.97005 * 119.99940 * 0.02562 * 6 5 4 31 31 H 1.08002 * 124.05835 * 0.02562 * 10 9 7 32 32 H 0.96994 * 120.00064 * 264.99923 * 14 2 1 33 33 H 0.97002 * 119.99592 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6134 1.3135 6 7 4.0533 -1.3035 2.5099 7 6 5.3742 -1.3397 2.7750 8 8 6.1608 -0.7989 2.0212 9 6 5.8649 -2.0335 3.9766 10 6 7.1682 -2.1783 4.4143 11 7 7.2351 -2.8568 5.5358 12 7 6.1706 -3.2948 6.0803 13 16 4.9288 -2.8891 5.2162 14 7 2.0183 -0.6905 -1.1963 15 6 2.1490 -0.0073 -2.3758 16 1 1.8918 1.0405 -2.4243 17 6 2.6122 -0.6615 -3.5092 18 7 2.9252 -1.9385 -3.4501 19 14 2.7912 0.2707 -5.1180 20 1 2.3761 1.6828 -4.9208 21 1 4.2083 0.2279 -5.5599 22 1 1.9309 -0.3577 -6.1525 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8898 25 1 -0.3633 -1.0276 -0.0005 26 1 1.7517 -1.7716 1.2055 27 1 1.6055 -0.2618 2.1369 28 1 3.8533 0.4369 1.3573 29 1 3.9995 -1.0728 0.4257 30 1 3.4259 -1.7351 3.1108 31 1 8.0277 -1.7771 3.8980 32 1 2.2490 -1.6316 -1.1528 33 1 3.2485 -2.3957 -4.2422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266128019.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:44 Heat of formation + Delta-G solvation = 17.197082 kcal Electronic energy + Delta-G solvation = -17688.629936 eV Core-core repulsion = 14683.314022 eV Total energy + Delta-G solvation = -3005.315915 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.93079 -40.67187 -38.13579 -35.96126 -34.18830 -33.23741 -31.12571 -29.84281 -28.37397 -25.88269 -24.80189 -23.18201 -21.99630 -21.22663 -20.25321 -19.26061 -18.53687 -17.22608 -17.12042 -16.80022 -16.26323 -15.89707 -15.60149 -15.33483 -15.26802 -14.51564 -14.13333 -13.85095 -13.55803 -13.22892 -13.04557 -12.84461 -12.61151 -12.27537 -12.20560 -12.07719 -11.69875 -11.58039 -11.43876 -11.21179 -11.20031 -10.93341 -10.92558 -10.23410 -8.94867 -7.90761 -5.16805 -1.38047 -0.27139 0.40185 0.85366 1.47948 1.49180 1.57912 1.81085 1.86756 2.59172 2.93174 3.44336 3.55922 3.66657 3.94002 4.01400 4.24707 4.38997 4.56104 4.70568 4.80133 4.90482 5.04766 5.10156 5.20984 5.33283 5.44017 5.57885 5.65783 6.27150 6.32955 6.54302 6.94934 7.39349 8.17719 8.38235 9.32923 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027904 B = 0.003725 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.191800 B = 7514.194033 C = 8139.928437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.164 3.836 3 H 0.045 0.955 4 C -0.119 4.119 5 C 0.131 3.869 6 N -0.701 5.701 7 C 0.597 3.403 8 O -0.560 6.560 9 C -0.303 4.303 10 C 0.075 3.925 11 N -0.275 5.275 12 N -0.288 5.288 13 S 0.520 5.480 14 N -0.736 5.736 15 C -0.230 4.230 16 H 0.074 0.926 17 C -0.076 4.076 18 N -0.969 5.969 19 Si 0.963 3.037 20 H -0.266 1.266 21 H -0.299 1.299 22 H -0.295 1.295 23 H 0.076 0.924 24 H 0.030 0.970 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.110 0.890 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.415 0.585 31 H 0.226 0.774 32 H 0.372 0.628 33 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.842 -0.352 20.335 20.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 H 0.063 0.937 4 C -0.157 4.157 5 C 0.007 3.993 6 N -0.353 5.353 7 C 0.381 3.619 8 O -0.439 6.439 9 C -0.444 4.444 10 C -0.093 4.093 11 N -0.138 5.138 12 N -0.269 5.269 13 S 0.654 5.346 14 N -0.377 5.377 15 C -0.362 4.362 16 H 0.092 0.908 17 C -0.269 4.269 18 N -0.621 5.621 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.227 1.227 22 H -0.223 1.223 23 H 0.095 0.905 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.128 0.872 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.253 0.747 31 H 0.242 0.758 32 H 0.204 0.796 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.904 -0.817 21.271 21.306 hybrid contribution 0.942 0.482 -2.261 2.497 sum 0.038 -0.335 19.009 19.012 Atomic orbital electron populations 1.22273 0.97202 1.01066 1.00870 1.20464 0.93102 0.95332 0.85577 0.93699 1.21960 0.92176 1.02458 0.99147 1.21282 0.95631 0.96621 0.85731 1.45767 1.06089 1.56194 1.27275 1.16748 0.82941 0.79292 0.82933 1.90878 1.56432 1.47059 1.49509 1.27916 0.99121 1.12330 1.05060 1.24721 0.98209 0.95231 0.91108 1.70782 1.19967 1.12600 1.10465 1.78622 0.99914 1.22426 1.25977 1.82142 1.17094 1.30806 1.04564 1.42677 1.78356 1.10299 1.06326 1.19630 1.34035 0.94092 0.88456 0.90774 1.25433 1.03443 0.96808 1.01172 1.69801 1.53081 1.10119 1.29074 0.85216 0.76528 0.78388 0.80555 1.19036 1.22669 1.22292 0.90488 0.95037 0.93612 0.90626 0.87204 0.91902 0.93668 0.74747 0.75783 0.79561 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 9.49 71.98 0.68 -3.96 16 2 C 0.16 5.57 2.89 44.99 0.13 5.70 16 3 H 0.04 1.58 8.08 -2.39 -0.02 1.57 16 4 C -0.12 -2.92 4.87 30.59 0.15 -2.77 16 5 C 0.13 3.77 5.56 86.38 0.48 4.25 16 6 N -0.70 -15.39 5.55 -466.63 -2.59 -17.99 16 7 C 0.60 15.59 7.80 86.59 0.68 16.27 16 8 O -0.56 -20.12 16.98 -4.10 -0.07 -20.19 16 9 C -0.30 -6.01 6.81 24.62 0.17 -5.84 16 10 C 0.08 1.51 11.55 84.78 0.98 2.49 16 11 N -0.28 -6.07 11.54 -57.87 -0.67 -6.73 16 12 N -0.29 -5.73 12.51 37.02 0.46 -5.27 16 13 S 0.52 6.91 23.05 -56.49 -1.30 5.61 16 14 N -0.74 -34.53 4.57 -322.94 -1.48 -36.00 16 15 C -0.23 -12.36 9.93 84.03 0.83 -11.53 16 16 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 17 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 18 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 19 Si 0.96 46.25 29.55 68.60 2.03 48.27 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 23 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.04 1.75 7.75 -2.39 -0.02 1.73 16 30 H 0.42 5.66 7.90 -92.70 -0.73 4.93 16 31 H 0.23 3.84 8.06 -2.91 -0.02 3.82 16 32 H 0.37 18.92 7.80 -92.71 -0.72 18.20 16 33 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -72.18 307.12 0.93 -71.26 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -0.31 Total: 18.96 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 4.57 Total: 0.73 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -3.99 Total: -124.64 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.07 Total: -20.19 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 16 Polarization: 6.91 SS G_CDS: -1.30 Total: 5.61 kcal Total: -72.18 0.93 -71.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266128019.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.452 kcal (2) G-P(sol) polarization free energy of solvation -72.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds