Wall clock time and date at job start Mon Mar 30 2020 01:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47294 * 90.00155 * 10 8 6 12 12 H 1.48499 * 109.47218 * 210.00015 * 10 8 6 13 13 H 1.48496 * 109.47166 * 329.99846 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21609 * 120.00054 * 359.97438 * 16 15 14 18 18 C 1.47445 * 120.00362 * 179.97438 * 16 15 14 19 19 C 1.37978 * 124.15881 * 179.97438 * 18 16 15 20 20 S 1.72106 * 104.03569 * 179.97438 * 19 18 16 21 21 N 1.56406 * 96.15289 * 0.02562 * 20 19 18 22 22 N 1.27416 * 109.87438 * 359.74386 * 21 20 19 23 23 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 24 24 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 26 26 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 27 27 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 28 28 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 29 29 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 30 30 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 31 31 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 32 32 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 33 33 H 1.08004 * 127.98208 * 359.96107 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.4152 0.2239 6.8982 12 1 1.0697 0.0908 7.4992 13 1 2.1727 -1.8181 6.4894 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6289 -1.4454 -3.7796 18 6 1.6059 0.3483 -4.8668 19 6 1.9123 -0.0305 -6.1577 20 16 1.2184 1.2072 -7.1317 21 7 0.6388 2.0478 -5.9468 22 7 0.9117 1.4804 -4.8390 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 3.1264 -0.7995 1.2056 27 1 1.6054 -1.7198 1.2950 28 1 1.1483 0.8591 2.3518 29 1 0.6807 1.9070 5.4838 30 1 3.1264 -0.7994 -1.2056 31 1 1.6054 -1.7198 -1.2953 32 1 1.1483 0.8592 -2.3518 33 1 2.4610 -0.9023 -6.4821 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270469267.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:20 Heat of formation + Delta-G solvation = 13.871478 kcal Electronic energy + Delta-G solvation = -17573.135627 eV Core-core repulsion = 14567.675503 eV Total energy + Delta-G solvation = -3005.460124 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.15244 -40.45286 -38.26453 -36.02811 -34.20306 -33.18661 -31.87272 -28.50635 -27.71139 -27.11646 -24.99939 -23.66353 -21.91515 -21.43834 -20.25869 -19.10148 -17.88438 -17.23630 -17.17804 -16.71730 -16.37641 -16.22294 -15.53776 -15.43388 -15.24303 -14.70124 -14.15931 -13.67575 -13.64763 -13.58208 -13.05103 -12.95278 -12.80449 -12.20345 -12.16563 -12.01731 -11.79577 -11.66904 -11.46603 -11.26246 -11.17599 -10.93448 -10.90613 -10.21315 -8.98652 -7.94619 -5.23075 -0.93726 -0.04560 0.30310 0.53794 1.48172 1.49801 1.58286 1.99110 1.99503 2.57089 2.73720 3.39201 3.63075 3.69199 3.84151 3.95182 4.07173 4.32990 4.37688 4.53265 4.69533 4.73917 4.93024 5.03067 5.12713 5.22108 5.36636 5.45326 5.50855 6.19700 6.28181 6.52825 6.93776 7.34607 8.10289 8.33803 9.29019 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.053305 B = 0.002890 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.154806 B = 9685.631811 C =10060.929006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 H 0.076 0.924 4 C 0.158 3.842 5 N -0.743 5.743 6 C -0.245 4.245 7 H 0.076 0.924 8 C -0.076 4.076 9 N -0.969 5.969 10 Si 0.974 3.026 11 H -0.287 1.287 12 H -0.295 1.295 13 H -0.270 1.270 14 C 0.137 3.863 15 N -0.699 5.699 16 C 0.602 3.398 17 O -0.557 6.557 18 C -0.046 4.046 19 C -0.235 4.235 20 S 0.566 5.434 21 N -0.333 5.333 22 N -0.236 5.236 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.376 0.624 29 H 0.251 0.749 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.416 0.584 33 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.628 -1.939 -27.928 28.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.116 4.116 3 H 0.094 0.906 4 C 0.031 3.969 5 N -0.386 5.386 6 C -0.377 4.377 7 H 0.093 0.907 8 C -0.268 4.268 9 N -0.620 5.620 10 Si 0.803 3.197 11 H -0.214 1.214 12 H -0.222 1.222 13 H -0.194 1.194 14 C 0.013 3.987 15 N -0.349 5.349 16 C 0.384 3.616 17 O -0.435 6.435 18 C -0.194 4.194 19 C -0.392 4.392 20 S 0.701 5.299 21 N -0.314 5.314 22 N -0.105 5.105 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.208 0.792 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.253 0.747 33 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.239 -1.246 -28.506 28.534 hybrid contribution 0.411 -0.610 2.171 2.292 sum 0.650 -1.856 -26.336 26.409 Atomic orbital electron populations 1.21733 0.94099 1.02065 1.01515 1.21353 0.97054 1.00121 0.93025 0.90575 1.20719 0.96725 0.94138 0.85307 1.42538 1.66926 1.27754 1.01411 1.19646 1.27740 1.05374 0.84967 0.90652 1.25565 1.01702 0.97954 1.01598 1.69815 1.45047 1.18050 1.29103 0.85133 0.76908 0.78006 0.79674 1.21421 1.22178 1.19450 1.21312 1.00285 0.95129 0.82000 1.45848 1.56072 1.28044 1.04970 1.16855 0.79083 0.83579 0.82034 1.90824 1.41525 1.24585 1.86566 1.22518 1.04765 0.95846 0.96240 1.29294 1.05277 1.09027 0.95591 1.81168 1.30397 1.02700 1.15674 1.78321 1.25434 1.27455 1.00171 1.71579 1.12612 1.07458 1.18843 0.91278 0.92526 0.93832 0.95850 0.95700 0.79175 0.93996 0.90930 0.90613 0.74673 0.75299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 8.94 71.98 0.64 -3.45 16 2 C -0.10 -2.96 2.46 -10.79 -0.03 -2.99 16 3 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.16 6.22 5.65 86.38 0.49 6.71 16 5 N -0.74 -37.76 5.33 -343.46 -1.83 -39.59 16 6 C -0.25 -13.82 9.99 84.03 0.84 -12.98 16 7 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 8 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 9 N -0.97 -59.66 13.06 21.65 0.28 -59.37 16 10 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 14 C 0.14 3.61 5.06 86.38 0.44 4.05 16 15 N -0.70 -17.00 5.28 -466.35 -2.46 -19.46 16 16 C 0.60 15.23 7.81 86.67 0.68 15.91 16 17 O -0.56 -16.75 16.80 -4.06 -0.07 -16.82 16 18 C -0.05 -0.94 6.87 41.36 0.28 -0.66 16 19 C -0.24 -3.00 11.21 67.76 0.76 -2.24 16 20 S 0.57 5.07 23.38 -56.49 -1.32 3.75 16 21 N -0.33 -6.25 12.49 37.02 0.46 -5.79 16 22 N -0.24 -5.22 11.24 -50.34 -0.57 -5.79 16 23 H 0.07 1.71 7.18 -2.39 -0.02 1.70 16 24 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.04 1.55 7.18 -2.39 -0.02 1.54 16 26 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.38 20.16 6.85 -92.71 -0.63 19.53 16 29 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 30 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.42 9.39 7.24 -92.71 -0.67 8.72 16 33 H 0.23 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -71.48 303.44 0.94 -70.54 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -0.15 Total: 23.61 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 4.57 Total: 0.41 kcal Atomic # 7 Polarization: -125.89 SS G_CDS: -4.11 Total: -130.01 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.07 Total: -16.82 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -1.32 Total: 3.75 kcal Total: -71.48 0.94 -70.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270469267.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.409 kcal (2) G-P(sol) polarization free energy of solvation -71.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds