Wall clock time and date at job start Mon Mar 30 2020 00:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.36973 * 126.98343 * 68.72937 * 3 2 1 5 5 N 1.34844 * 106.03821 * 180.25995 * 4 3 2 6 6 C 1.46500 * 125.67453 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47220 * 124.95487 * 6 5 4 8 8 C 1.38302 * 119.92803 * 269.72778 * 7 6 5 9 9 C 1.38105 * 120.06948 * 179.72519 * 8 7 6 10 10 C 1.38882 * 119.92588 * 0.56697 * 9 8 7 11 11 O 1.35747 * 120.06400 * 179.68496 * 10 9 8 12 12 C 1.34831 * 116.99757 * 174.49137 * 11 10 9 13 13 H 1.07999 * 119.99864 * 5.04954 * 12 11 10 14 14 C 1.38654 * 119.99967 * 185.05849 * 12 11 10 15 15 N 1.31559 * 120.00244 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99916 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47266 * 90.00006 * 16 14 12 18 18 H 1.48506 * 109.47108 * 209.99472 * 16 14 12 19 19 H 1.48499 * 109.47061 * 329.99632 * 16 14 12 20 20 C 1.38874 * 119.86548 * 359.70716 * 10 9 8 21 21 C 1.38102 * 119.93028 * 359.97438 * 20 10 9 22 22 N 1.28623 * 108.65648 * 0.02562 * 5 4 3 23 23 N 1.28619 * 110.59279 * 359.97438 * 22 5 4 24 24 H 1.08003 * 126.98264 * 0.26244 * 4 3 2 25 25 H 1.09002 * 109.47148 * 244.95115 * 6 5 4 26 26 H 1.08998 * 109.47499 * 4.95116 * 6 5 4 27 27 H 1.08007 * 119.96771 * 359.97438 * 8 7 6 28 28 H 1.07994 * 120.03521 * 180.27432 * 9 8 7 29 29 H 0.96991 * 120.00310 * 180.02562 * 15 14 12 30 30 H 1.07992 * 120.04025 * 179.97438 * 20 10 9 31 31 H 1.07999 * 119.96771 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3922 -0.3959 -1.0196 5 7 4.6514 -0.2260 -0.5683 6 6 5.8749 -0.5194 -1.3188 7 6 6.7457 0.7098 -1.3604 8 6 6.6101 1.6168 -2.3957 9 6 7.4027 2.7471 -2.4336 10 6 8.3448 2.9665 -1.4371 11 8 9.1298 4.0734 -1.4752 12 6 9.9422 4.2841 -0.4200 13 1 10.0084 3.5468 0.3663 14 6 10.6927 5.4476 -0.3443 15 7 10.6124 6.3457 -1.3023 16 14 11.8177 5.7399 1.1180 17 1 13.1640 5.1856 0.8254 18 1 11.9281 7.1986 1.3739 19 1 11.2556 5.0680 2.3171 20 6 8.4826 2.0510 -0.4020 21 6 7.6824 0.9260 -0.3661 22 7 4.5998 0.2366 0.6308 23 7 3.3787 0.3859 1.0059 24 1 3.0940 -0.7689 -1.9883 25 1 6.4148 -1.3308 -0.8306 26 1 5.6155 -0.8155 -2.3352 27 1 5.8807 1.4430 -3.1731 28 1 7.2932 3.4572 -3.2399 29 1 11.1376 7.1593 -1.2496 30 1 9.2145 2.2186 0.3741 31 1 7.7887 0.2138 0.4388 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307349477.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:07 Heat of formation + Delta-G solvation = 131.603152 kcal Electronic energy + Delta-G solvation = -18598.396721 eV Core-core repulsion = 15462.597874 eV Total energy + Delta-G solvation = -3135.798847 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.50166 -39.27896 -37.20074 -36.72796 -34.68469 -32.47355 -31.60342 -30.48143 -30.31485 -26.61383 -25.29125 -24.43022 -22.37750 -22.18614 -20.90683 -19.12866 -18.18198 -17.15130 -16.89170 -16.73353 -15.18516 -14.93891 -14.78562 -14.55320 -13.94050 -13.78037 -13.64487 -13.50626 -13.16462 -13.05778 -12.90327 -12.40660 -11.91442 -11.77360 -11.50498 -11.35066 -11.12495 -10.96333 -10.84367 -10.54022 -10.25116 -9.57274 -9.52185 -9.00131 -8.40059 -7.48784 -6.61409 -4.19849 1.07488 1.62376 1.78467 2.03938 2.34180 2.48689 3.04947 3.07032 3.11709 3.27726 3.48374 3.84589 4.30489 4.35425 4.47602 4.75443 4.81484 4.93958 5.05148 5.12704 5.36978 5.46513 5.51579 5.63057 6.00995 6.18231 6.28429 6.44476 6.67251 6.83694 6.96783 7.13392 7.21888 7.25073 7.58059 7.83065 8.22456 8.83624 9.49056 10.55542 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030237 B = 0.003582 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.790488 B = 7814.787822 C = 8017.717261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.308 3.692 3 C 0.025 3.975 4 C 0.012 3.988 5 N -0.269 5.269 6 C 0.170 3.830 7 C -0.235 4.235 8 C -0.049 4.049 9 C -0.197 4.197 10 C 0.167 3.833 11 O -0.167 6.167 12 C -0.394 4.394 13 H 0.096 0.904 14 C 0.042 3.958 15 N -0.856 5.856 16 Si 0.943 3.057 17 H -0.272 1.272 18 H -0.276 1.276 19 H -0.265 1.265 20 C -0.238 4.238 21 C -0.028 4.028 22 N -0.048 5.048 23 N -0.234 5.234 24 H 0.203 0.797 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.273 0.727 30 H 0.131 0.869 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.735 -13.691 -2.111 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C -0.010 4.010 3 C -0.115 4.115 4 C -0.145 4.145 5 N -0.059 5.059 6 C 0.052 3.948 7 C -0.237 4.237 8 C -0.068 4.068 9 C -0.216 4.216 10 C 0.111 3.889 11 O -0.069 6.069 12 C -0.470 4.470 13 H 0.113 0.887 14 C -0.164 4.164 15 N -0.489 5.489 16 Si 0.767 3.233 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.189 1.189 20 C -0.257 4.257 21 C -0.047 4.047 22 N -0.029 5.029 23 N -0.103 5.103 24 H 0.220 0.780 25 H 0.124 0.876 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.138 0.862 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.425 -12.797 -1.125 14.838 hybrid contribution 0.537 -0.118 -0.263 0.609 sum -6.889 -12.915 -1.387 14.703 Atomic orbital electron populations 1.81287 1.10945 1.08805 1.06955 1.23593 0.90083 0.93437 0.93910 1.16833 0.87755 1.12286 0.94578 1.23612 0.83775 1.05294 1.01793 1.47979 1.07885 1.38885 1.11172 1.21047 0.80257 0.97799 0.95711 1.18875 1.04252 0.99353 1.01227 1.20453 0.97092 0.92808 0.96440 1.20170 0.99815 1.00216 1.01426 1.19459 0.89152 0.87409 0.92888 1.83970 1.45586 1.35775 1.41566 1.21416 1.20526 1.05491 0.99539 0.88664 1.25360 0.97861 0.94393 0.98787 1.70030 1.38538 1.08600 1.31747 0.85670 0.79522 0.78320 0.79751 1.19702 1.20086 1.18931 1.21153 1.05430 0.96851 1.02273 1.20595 0.92884 0.95844 0.95414 1.78391 1.14147 1.14090 0.96303 1.75649 0.95263 1.16091 1.23317 0.78020 0.87611 0.87074 0.87011 0.86227 0.91700 0.85161 0.86961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.40 18.54 41.84 0.78 -4.62 16 2 C 0.31 3.69 15.92 -22.47 -0.36 3.33 16 3 C 0.03 0.29 7.00 -85.09 -0.60 -0.30 16 4 C 0.01 0.11 11.52 -16.69 -0.19 -0.09 16 5 N -0.27 -2.88 3.41 -62.13 -0.21 -3.10 16 6 C 0.17 1.49 6.57 -5.19 -0.03 1.46 16 7 C -0.23 -3.21 5.25 -104.57 -0.55 -3.76 16 8 C -0.05 -0.73 9.69 -39.61 -0.38 -1.11 16 9 C -0.20 -3.73 9.99 -39.39 -0.39 -4.13 16 10 C 0.17 3.72 6.65 -39.11 -0.26 3.46 16 11 O -0.17 -4.51 9.76 0.05 0.00 -4.51 16 12 C -0.39 -10.46 9.49 30.89 0.29 -10.17 16 13 H 0.10 2.32 5.20 -52.49 -0.27 2.05 16 14 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 15 N -0.86 -24.10 13.67 55.48 0.76 -23.34 16 16 Si 0.94 19.65 29.55 -169.99 -5.02 14.63 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 20 C -0.24 -4.71 9.17 -39.40 -0.36 -5.07 16 21 C -0.03 -0.45 9.69 -39.61 -0.38 -0.84 16 22 N -0.05 -0.70 12.88 60.35 0.78 0.08 16 23 N -0.23 -3.45 12.47 32.01 0.40 -3.05 16 24 H 0.20 0.73 8.06 -52.48 -0.42 0.31 16 25 H 0.11 0.75 8.08 -51.93 -0.42 0.33 16 26 H 0.11 0.57 8.00 -51.93 -0.42 0.15 16 27 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 28 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -31.74 295.49 -3.62 -35.35 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -2.23 Total: 0.32 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -3.31 Total: -16.21 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 2.50 Total: -34.03 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: 0.00 Total: -4.51 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.74 -3.62 -35.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307349477.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.956 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds