Wall clock time and date at job start Mon Mar 30 2020 00:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.36973 * 126.98343 * 68.72937 * 3 2 1 5 5 N 1.34844 * 106.03821 * 180.25995 * 4 3 2 6 6 C 1.46500 * 125.67453 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47220 * 124.95487 * 6 5 4 8 8 C 1.38302 * 119.92803 * 269.72778 * 7 6 5 9 9 C 1.38105 * 120.06948 * 179.72519 * 8 7 6 10 10 C 1.38882 * 119.92588 * 0.56697 * 9 8 7 11 11 O 1.35747 * 120.06400 * 179.68496 * 10 9 8 12 12 C 1.34831 * 116.99757 * 174.49137 * 11 10 9 13 13 H 1.07999 * 119.99864 * 5.04954 * 12 11 10 14 14 C 1.38654 * 119.99967 * 185.05849 * 12 11 10 15 15 N 1.31559 * 120.00244 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99916 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47266 * 90.00006 * 16 14 12 18 18 H 1.48506 * 109.47108 * 209.99472 * 16 14 12 19 19 H 1.48499 * 109.47061 * 329.99632 * 16 14 12 20 20 C 1.38874 * 119.86548 * 359.70716 * 10 9 8 21 21 C 1.38102 * 119.93028 * 359.97438 * 20 10 9 22 22 N 1.28623 * 108.65648 * 0.02562 * 5 4 3 23 23 N 1.28619 * 110.59279 * 359.97438 * 22 5 4 24 24 H 1.08003 * 126.98264 * 0.26244 * 4 3 2 25 25 H 1.09002 * 109.47148 * 244.95115 * 6 5 4 26 26 H 1.08998 * 109.47499 * 4.95116 * 6 5 4 27 27 H 1.08007 * 119.96771 * 359.97438 * 8 7 6 28 28 H 1.07994 * 120.03521 * 180.27432 * 9 8 7 29 29 H 0.96991 * 120.00310 * 180.02562 * 15 14 12 30 30 H 1.07992 * 120.04025 * 179.97438 * 20 10 9 31 31 H 1.07999 * 119.96771 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3922 -0.3959 -1.0196 5 7 4.6514 -0.2260 -0.5683 6 6 5.8749 -0.5194 -1.3188 7 6 6.7457 0.7098 -1.3604 8 6 6.6101 1.6168 -2.3957 9 6 7.4027 2.7471 -2.4336 10 6 8.3448 2.9665 -1.4371 11 8 9.1298 4.0734 -1.4752 12 6 9.9422 4.2841 -0.4200 13 1 10.0084 3.5468 0.3663 14 6 10.6927 5.4476 -0.3443 15 7 10.6124 6.3457 -1.3023 16 14 11.8177 5.7399 1.1180 17 1 13.1640 5.1856 0.8254 18 1 11.9281 7.1986 1.3739 19 1 11.2556 5.0680 2.3171 20 6 8.4826 2.0510 -0.4020 21 6 7.6824 0.9260 -0.3661 22 7 4.5998 0.2366 0.6308 23 7 3.3787 0.3859 1.0059 24 1 3.0940 -0.7689 -1.9883 25 1 6.4148 -1.3308 -0.8306 26 1 5.6155 -0.8155 -2.3352 27 1 5.8807 1.4430 -3.1731 28 1 7.2932 3.4572 -3.2399 29 1 11.1376 7.1593 -1.2496 30 1 9.2145 2.2186 0.3741 31 1 7.7887 0.2138 0.4388 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307349477.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:07 Heat of formation + Delta-G solvation = 109.473783 kcal Electronic energy + Delta-G solvation = -18599.356322 eV Core-core repulsion = 15462.597874 eV Total energy + Delta-G solvation = -3136.758448 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.37080 -40.81098 -38.61464 -37.74189 -35.72839 -34.29736 -32.46370 -31.84016 -31.59900 -27.97125 -26.88559 -25.32928 -23.64475 -23.38312 -22.13438 -20.15379 -19.79185 -18.81622 -17.74357 -17.61308 -16.44778 -16.31373 -16.00242 -15.86221 -15.54628 -15.16805 -14.65352 -14.60055 -14.40965 -14.22230 -14.12086 -13.69042 -13.30417 -13.02593 -12.83227 -12.55582 -12.51115 -12.35431 -12.14662 -11.98032 -11.23798 -11.14097 -10.83186 -10.42050 -9.78925 -9.05086 -8.50568 -6.18758 0.29790 0.46389 0.60912 0.82013 1.34698 1.40347 1.42864 1.51577 1.57112 2.15833 2.38192 2.59743 2.83042 3.15768 3.48765 3.63327 3.75306 3.93826 4.05063 4.16331 4.22340 4.48033 4.56900 4.61568 4.70763 4.83805 5.02706 5.12955 5.26158 5.51785 5.54144 5.68394 5.71107 6.00404 6.18103 6.31770 6.94620 7.33086 7.73444 8.72230 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030237 B = 0.003582 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.790488 B = 7814.787822 C = 8017.717261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.327 3.673 3 C 0.003 3.997 4 C 0.058 3.942 5 N -0.270 5.270 6 C 0.168 3.832 7 C -0.200 4.200 8 C -0.037 4.037 9 C -0.215 4.215 10 C 0.125 3.875 11 O -0.230 6.230 12 C -0.414 4.414 13 H 0.102 0.898 14 C -0.021 4.021 15 N -0.918 5.918 16 Si 1.016 2.984 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.254 1.254 20 C -0.253 4.253 21 C -0.032 4.032 22 N -0.089 5.089 23 N -0.269 5.269 24 H 0.263 0.737 25 H 0.132 0.868 26 H 0.170 0.830 27 H 0.165 0.835 28 H 0.113 0.887 29 H 0.273 0.727 30 H 0.115 0.885 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.525 -17.548 -2.904 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C 0.009 3.991 3 C -0.137 4.137 4 C -0.099 4.099 5 N -0.060 5.060 6 C 0.051 3.949 7 C -0.202 4.202 8 C -0.055 4.055 9 C -0.234 4.234 10 C 0.073 3.927 11 O -0.135 6.135 12 C -0.490 4.490 13 H 0.120 0.880 14 C -0.219 4.219 15 N -0.556 5.556 16 Si 0.835 3.165 17 H -0.185 1.185 18 H -0.197 1.197 19 H -0.178 1.178 20 C -0.272 4.272 21 C -0.050 4.050 22 N -0.070 5.070 23 N -0.139 5.139 24 H 0.279 0.721 25 H 0.150 0.850 26 H 0.188 0.812 27 H 0.182 0.818 28 H 0.132 0.868 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.246 -16.721 -1.906 19.202 hybrid contribution 0.736 0.663 -0.111 0.997 sum -8.510 -16.058 -2.017 18.285 Atomic orbital electron populations 1.81314 1.11848 1.10090 1.07984 1.23603 0.90051 0.92424 0.92974 1.17016 0.87480 1.13820 0.95406 1.24431 0.81802 1.01315 1.02400 1.47957 1.09086 1.38597 1.10406 1.21448 0.79143 0.95191 0.99144 1.19490 1.02262 0.99995 0.98407 1.21030 0.96182 0.90638 0.97665 1.20510 1.00083 1.02128 1.00672 1.20094 0.90324 0.87218 0.95037 1.83938 1.48269 1.38658 1.42684 1.21824 1.20995 1.06079 1.00090 0.88027 1.26568 0.99527 0.93920 1.01850 1.70168 1.41189 1.09685 1.34584 0.84617 0.77502 0.78258 0.76076 1.18520 1.19691 1.17808 1.21254 1.06288 0.98184 1.01523 1.20993 0.92415 0.94752 0.96883 1.78370 1.14123 1.16197 0.98271 1.75594 0.96047 1.17103 1.25132 0.72130 0.84982 0.81201 0.81785 0.86843 0.91754 0.86741 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -10.85 18.54 19.00 0.35 -10.50 16 2 C 0.33 6.96 15.92 88.33 1.41 8.37 16 3 C 0.00 0.05 7.00 39.63 0.28 0.33 16 4 C 0.06 0.60 11.52 83.93 0.97 1.56 16 5 N -0.27 -4.13 3.41 -350.48 -1.20 -5.32 16 6 C 0.17 1.64 6.57 85.63 0.56 2.21 16 7 C -0.20 -4.43 5.25 -19.83 -0.10 -4.54 16 8 C -0.04 -0.93 9.69 22.25 0.22 -0.71 16 9 C -0.21 -8.08 9.99 22.39 0.22 -7.86 16 10 C 0.12 5.81 6.65 22.58 0.15 5.96 16 11 O -0.23 -13.40 9.76 -22.72 -0.22 -13.62 16 12 C -0.41 -23.62 9.49 67.92 0.64 -22.98 16 13 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 14 C -0.02 -1.16 5.49 84.83 0.47 -0.69 16 15 N -0.92 -55.60 13.67 21.61 0.30 -55.30 16 16 Si 1.02 42.31 29.55 68.60 2.03 44.33 16 17 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 20 C -0.25 -10.24 9.17 22.39 0.21 -10.03 16 21 C -0.03 -0.93 9.69 22.25 0.22 -0.72 16 22 N -0.09 -2.26 12.88 37.02 0.48 -1.78 16 23 N -0.27 -7.29 12.47 -52.64 -0.66 -7.94 16 24 H 0.26 -0.62 8.06 -2.91 -0.02 -0.64 16 25 H 0.13 0.81 8.08 -2.39 -0.02 0.80 16 26 H 0.17 -0.10 8.00 -2.39 -0.02 -0.12 16 27 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 28 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 29 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 30 H 0.11 4.87 5.64 -2.91 -0.02 4.85 16 31 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -81.10 295.49 7.49 -73.60 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 1.19 Total: 5.63 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 5.23 Total: -29.10 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -0.73 Total: -80.85 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.22 Total: -13.62 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -81.10 7.49 -73.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307349477.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.076 kcal (2) G-P(sol) polarization free energy of solvation -81.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds