Wall clock time and date at job start Mon Mar 30 2020 01:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 5 5 C 1.34777 * 120.00258 * 85.00009 * 4 2 1 6 6 O 1.21579 * 119.99978 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99908 * 179.97438 * 5 4 2 8 8 C 1.46494 * 119.99635 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47001 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47324 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99992 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00038 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00041 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00004 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47273 * 59.99698 * 14 12 10 16 16 H 1.48505 * 109.47234 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47290 * 299.99894 * 14 12 10 18 18 C 1.50698 * 109.47254 * 119.99584 * 2 1 3 19 19 C 1.35343 * 123.76636 * 274.73141 * 18 2 1 20 20 S 1.72120 * 104.15208 * 179.90194 * 19 18 2 21 21 N 1.56517 * 95.88221 * 0.32325 * 20 19 18 22 22 N 1.27565 * 109.22314 * 359.80456 * 21 20 19 23 23 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 24 24 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 25 25 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 26 26 H 0.96999 * 119.99694 * 264.99399 * 4 2 1 27 27 H 0.96995 * 120.00015 * 359.72369 * 7 5 4 28 28 H 1.09005 * 109.47306 * 299.99972 * 8 7 5 29 29 H 1.09002 * 109.47518 * 60.00210 * 8 7 5 30 30 H 1.09005 * 109.46767 * 299.99934 * 9 8 7 31 31 H 1.08996 * 109.47766 * 59.99412 * 9 8 7 32 32 H 0.97001 * 120.00302 * 179.97438 * 13 12 10 33 33 H 1.07997 * 127.92490 * 359.97438 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8575 1.1613 -2.4119 7 7 2.5968 -0.6535 -3.4575 8 6 2.7362 0.0772 -4.7195 9 6 3.2607 -0.8690 -5.8014 10 6 3.4047 -0.1172 -7.0995 11 1 3.1475 0.9305 -7.1482 12 6 3.8649 -0.7671 -8.2251 13 7 4.1787 -2.0428 -8.1658 14 14 4.0427 0.1646 -9.8343 15 1 4.9970 1.2879 -9.6532 16 1 4.5531 -0.7535 -10.8841 17 1 2.7200 0.7003 -10.2450 18 6 2.0324 -0.7103 1.2305 19 6 2.1956 -0.1092 2.4321 20 16 2.7783 -1.3648 3.4550 21 7 2.7801 -2.4793 2.3560 22 7 2.3669 -1.9843 1.2553 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 2.2491 -1.6317 -1.1525 27 1 2.8317 -1.5935 -3.4128 28 1 1.7653 0.4704 -5.0209 29 1 3.4368 0.9016 -4.5866 30 1 4.2316 -1.2626 -5.5003 31 1 2.5600 -1.6932 -5.9342 32 1 4.5021 -2.5001 -8.9577 33 1 2.0032 0.9216 2.6902 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001312489708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:16 Heat of formation + Delta-G solvation = 6.008534 kcal Electronic energy + Delta-G solvation = -17625.351579 eV Core-core repulsion = 14619.550492 eV Total energy + Delta-G solvation = -3005.801087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.13936 -40.90588 -37.22828 -36.23557 -34.82778 -33.39131 -31.57571 -30.29182 -28.08101 -26.71331 -24.84225 -22.92799 -22.05601 -21.89194 -19.80988 -19.25054 -18.41705 -17.10360 -16.88476 -16.68198 -16.54669 -16.45715 -15.57973 -15.38598 -15.06428 -14.69150 -14.27423 -14.05496 -13.50522 -13.20936 -13.06450 -12.91453 -12.81349 -12.52231 -12.40834 -12.20658 -11.66851 -11.50072 -11.20600 -11.12924 -10.93658 -10.72592 -10.59178 -10.33653 -9.76197 -8.22696 -6.33460 -0.73519 0.17454 0.70883 1.09244 1.42605 1.45522 1.53244 1.74755 2.15695 2.42288 2.87899 3.11995 3.36086 3.75317 3.96823 4.19527 4.24780 4.48402 4.51197 4.54390 4.74488 4.85062 4.88664 5.21594 5.32598 5.45475 5.52502 5.60412 5.79592 6.01543 6.17902 6.72476 6.79983 7.08369 7.35868 7.57442 8.89201 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.043551 B = 0.002983 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.765443 B = 9385.032624 C = 9773.562621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.248 3.752 3 H 0.108 0.892 4 N -0.732 5.732 5 C 0.703 3.297 6 O -0.631 6.631 7 N -0.736 5.736 8 C 0.162 3.838 9 C 0.023 3.977 10 C -0.547 4.547 11 H 0.061 0.939 12 C 0.006 3.994 13 N -0.928 5.928 14 Si 0.967 3.033 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.267 1.267 18 C 0.002 3.998 19 C -0.272 4.272 20 S 0.508 5.492 21 N -0.336 5.336 22 N -0.267 5.267 23 H 0.096 0.904 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.410 0.590 27 H 0.405 0.595 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.006 0.994 31 H 0.007 0.993 32 H 0.266 0.734 33 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.030 2.841 26.692 27.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.139 3.861 3 H 0.125 0.875 4 N -0.389 5.389 5 C 0.403 3.597 6 O -0.513 6.513 7 N -0.390 5.390 8 C 0.037 3.963 9 C -0.015 4.015 10 C -0.585 4.585 11 H 0.080 0.920 12 C -0.193 4.193 13 N -0.568 5.568 14 Si 0.791 3.209 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.192 1.192 18 C -0.144 4.144 19 C -0.428 4.428 20 S 0.643 5.357 21 N -0.315 5.315 22 N -0.133 5.133 23 H 0.115 0.885 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.246 0.754 27 H 0.239 0.761 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.074 0.926 33 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -4.597 2.057 27.264 27.725 hybrid contribution -0.095 0.402 -1.936 1.979 sum -4.692 2.460 25.328 25.876 Atomic orbital electron populations 1.22165 0.92640 1.02753 1.03674 1.19205 0.94784 0.95047 0.77095 0.87459 1.45039 1.71518 1.14423 1.07895 1.16032 0.78151 0.84689 0.80832 1.90849 1.59221 1.15834 1.85351 1.45273 1.69966 1.14531 1.09203 1.21084 0.99373 0.94551 0.81248 1.19132 0.95403 0.94515 0.92410 1.21452 1.44570 0.97082 0.95410 0.92045 1.25903 0.94666 0.95809 1.02930 1.70064 1.45136 1.10717 1.30871 0.85474 0.78944 0.78348 0.78136 1.19248 1.20680 1.19217 1.22358 1.03777 0.90106 0.98137 1.28550 1.07248 1.10602 0.96418 1.81173 1.42782 0.92751 1.19044 1.78568 1.23278 1.28092 1.01542 1.71071 1.13164 1.11933 1.17134 0.88518 0.92522 0.92360 0.75430 0.76059 0.93499 0.93611 0.97559 0.97465 0.92568 0.74639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.47 71.98 0.68 -2.23 16 2 C 0.25 5.35 2.96 44.25 0.13 5.48 16 3 H 0.11 2.38 7.58 -2.39 -0.02 2.36 16 4 N -0.73 -19.94 5.07 -461.42 -2.34 -22.28 16 5 C 0.70 24.99 8.53 179.05 1.53 26.52 16 6 O -0.63 -26.43 16.01 -3.96 -0.06 -26.49 16 7 N -0.74 -27.24 5.56 -478.53 -2.66 -29.90 16 8 C 0.16 7.18 5.61 86.38 0.48 7.67 16 9 C 0.02 1.19 5.09 29.85 0.15 1.34 16 10 C -0.55 -31.02 9.11 25.60 0.23 -30.79 16 11 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 12 C 0.01 0.31 5.46 84.65 0.46 0.78 16 13 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 14 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 18 C 0.00 0.04 5.93 41.90 0.25 0.29 16 19 C -0.27 -2.85 11.36 67.15 0.76 -2.09 16 20 S 0.51 5.31 23.40 -56.49 -1.32 3.99 16 21 N -0.34 -6.97 12.54 37.02 0.46 -6.50 16 22 N -0.27 -6.12 10.74 -51.25 -0.55 -6.67 16 23 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 24 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.41 10.44 7.89 -92.71 -0.73 9.70 16 27 H 0.40 13.31 8.49 -92.71 -0.79 12.53 16 28 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 33 H 0.24 0.57 8.06 -2.91 -0.02 0.55 16 Total: -1.00 -72.84 306.03 0.15 -72.69 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -0.37 Total: 17.24 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 4.68 Total: 6.97 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -4.80 Total: -120.50 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.06 Total: -26.49 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -1.32 Total: 3.99 kcal Total: -72.84 0.15 -72.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001312489708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.698 kcal (2) G-P(sol) polarization free energy of solvation -72.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds