Wall clock time and date at job start Mon Mar 30 2020 01:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.47052 * 2 1 4 4 S 1.81004 * 109.46967 * 119.99954 * 2 1 3 5 5 C 1.76199 * 99.99946 * 294.99915 * 4 2 1 6 6 N 1.31290 * 126.48125 * 359.68809 * 5 4 2 7 7 N 1.28530 * 109.85258 * 179.88358 * 6 5 4 8 8 C 1.30298 * 110.08067 * 0.38795 * 7 6 5 9 9 N 1.36536 * 126.48665 * 180.02562 * 5 4 2 10 10 C 1.46497 * 127.13914 * 359.96205 * 9 5 4 11 11 C 1.50704 * 109.47314 * 239.99778 * 2 1 3 12 12 O 1.21296 * 119.99993 * 265.00341 * 11 2 1 13 13 N 1.34774 * 120.00010 * 84.99789 * 11 2 1 14 14 C 1.46505 * 120.00120 * 0.02562 * 13 11 2 15 15 C 1.37098 * 120.00144 * 180.02562 * 13 11 2 16 16 H 1.07997 * 120.00071 * 329.62357 * 15 13 11 17 17 C 1.38956 * 120.00044 * 149.34511 * 15 13 11 18 18 N 1.31409 * 119.99535 * 160.29962 * 17 15 13 19 19 Si 1.86799 * 119.99959 * 340.30313 * 17 15 13 20 20 H 1.48504 * 109.47133 * 88.13650 * 19 17 15 21 21 H 1.48501 * 109.46956 * 208.13781 * 19 17 15 22 22 H 1.48502 * 109.47110 * 328.13742 * 19 17 15 23 23 H 1.08991 * 109.47499 * 300.00246 * 1 2 3 24 24 H 1.09000 * 109.46945 * 60.00356 * 1 2 3 25 25 H 1.09005 * 109.46963 * 180.02562 * 1 2 3 26 26 H 1.07997 * 126.33988 * 179.76030 * 8 7 6 27 27 H 1.09006 * 109.47084 * 90.00213 * 10 9 5 28 28 H 1.09002 * 109.47364 * 209.99554 * 10 9 5 29 29 H 1.09003 * 109.47677 * 330.00400 * 10 9 5 30 30 H 1.09004 * 109.46696 * 272.34460 * 14 13 11 31 31 H 1.09005 * 109.46729 * 32.33752 * 14 13 11 32 32 H 1.08992 * 109.47160 * 152.34082 * 14 13 11 33 33 H 0.97004 * 119.99057 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1333 -0.8533 1.4779 5 6 1.5439 0.2423 2.7257 6 7 0.8682 1.3516 2.5348 7 7 0.5986 1.8987 3.6662 8 6 1.0888 1.1820 4.6378 9 7 1.7090 0.1015 4.0737 10 6 2.4056 -0.9822 4.7711 11 6 2.0324 -0.7105 -1.2305 12 8 2.3208 -1.8874 -1.1759 13 7 2.1611 -0.0382 -2.3914 14 6 1.8131 1.3834 -2.4572 15 6 2.6176 -0.6846 -3.5109 16 1 3.3079 -1.5096 -3.4144 17 6 2.1878 -0.2821 -4.7695 18 7 2.8819 -0.6088 -5.8364 19 14 0.6233 0.7235 -4.9447 20 1 0.9469 2.1677 -4.8231 21 1 0.0137 0.4630 -6.2736 22 1 -0.3344 0.3392 -3.8768 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.0187 1.4011 5.6930 27 1 3.4568 -0.7199 4.8920 28 1 1.9538 -1.1329 5.7516 29 1 2.3249 -1.9001 4.1888 30 1 0.7519 1.4876 -2.6831 31 1 2.0284 1.8549 -1.4982 32 1 2.4001 1.8654 -3.2390 33 1 2.5819 -0.3275 -6.7150 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318118309.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:11 Heat of formation + Delta-G solvation = 69.042847 kcal Electronic energy + Delta-G solvation = -18550.357829 eV Core-core repulsion = 15547.290115 eV Total energy + Delta-G solvation = -3003.067714 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.86371 -38.94218 -35.12512 -34.94361 -32.99774 -31.84170 -30.52967 -27.81764 -26.59226 -25.58218 -23.45948 -22.73510 -22.38377 -19.24685 -17.91603 -17.16377 -16.62641 -16.40859 -16.20707 -15.41336 -15.25460 -14.62843 -14.02126 -13.69516 -13.65920 -13.31058 -13.12065 -12.65409 -12.57548 -12.20335 -11.81035 -11.77281 -11.53381 -11.32122 -10.75915 -10.69918 -10.49635 -10.39546 -10.02786 -9.98644 -9.93885 -9.21089 -8.68515 -7.92141 -7.54951 -6.46496 -4.01764 1.12720 1.57990 2.16696 2.53076 2.76900 3.02432 3.19289 3.21838 3.55537 4.08792 4.28860 4.33732 4.44375 4.77475 4.91908 5.06514 5.09003 5.18247 5.23928 5.44245 5.52063 5.80663 5.83190 5.93957 6.03829 6.10150 6.28083 6.46024 6.58122 7.39984 8.12573 8.37132 8.57131 8.82630 9.21809 9.59340 10.65095 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.038071 B = 0.005121 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.288692 B = 5466.109406 C = 5952.371571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.115 0.885 4 S 0.059 5.941 5 C 0.154 3.846 6 N -0.297 5.297 7 N -0.290 5.290 8 C 0.148 3.852 9 N -0.471 5.471 10 C 0.073 3.927 11 C 0.474 3.526 12 O -0.557 6.557 13 N -0.452 5.452 14 C 0.051 3.949 15 C -0.315 4.315 16 H 0.113 0.887 17 C 0.060 3.940 18 N -0.860 5.860 19 Si 0.882 3.118 20 H -0.273 1.273 21 H -0.288 1.288 22 H -0.266 1.266 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.220 0.780 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.647 3.045 19.237 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.229 4.229 3 H 0.132 0.868 4 S 0.288 5.712 5 C -0.221 4.221 6 N -0.141 5.141 7 N -0.129 5.129 8 C -0.142 4.142 9 N -0.166 5.166 10 C -0.070 4.070 11 C 0.260 3.740 12 O -0.439 6.439 13 N -0.172 5.172 14 C -0.093 4.093 15 C -0.443 4.443 16 H 0.130 0.870 17 C -0.147 4.147 18 N -0.497 5.497 19 Si 0.709 3.291 20 H -0.199 1.199 21 H -0.215 1.215 22 H -0.191 1.191 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.236 0.764 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.543 2.570 18.421 18.772 hybrid contribution -0.879 0.827 0.449 1.287 sum -3.422 3.397 18.870 19.476 Atomic orbital electron populations 1.21972 0.90708 1.03450 1.03790 1.23702 1.01644 1.03612 0.93950 0.86753 1.86061 1.67486 1.24993 0.92700 1.27526 1.04596 1.01819 0.88154 1.74683 1.16135 1.05270 1.18037 1.73907 1.19648 1.24421 0.94949 1.26632 0.99172 0.86762 1.01645 1.46512 1.43221 1.21409 1.05447 1.22146 0.97760 0.88883 0.98198 1.19190 0.83967 0.86855 0.83965 1.90594 1.53594 1.15347 1.84387 1.43608 1.57412 1.06992 1.09208 1.22210 1.00194 0.84109 1.02783 1.19189 1.25203 1.18235 0.81632 0.86957 1.25315 0.97283 0.97081 0.94988 1.69724 1.36626 1.44365 0.98940 0.87001 0.84359 0.80045 0.77662 1.19869 1.21451 1.19131 0.90168 0.91200 0.91394 0.76413 0.89688 0.88788 0.88687 0.93515 0.91596 0.89974 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.97 37.16 0.33 -2.05 16 2 C -0.10 -1.78 2.02 -27.88 -0.06 -1.83 16 3 H 0.11 1.99 6.09 -51.92 -0.32 1.68 16 4 S 0.06 0.96 20.56 -107.50 -2.21 -1.25 16 5 C 0.15 2.29 7.75 -88.34 -0.68 1.61 16 6 N -0.30 -4.94 9.76 30.68 0.30 -4.65 16 7 N -0.29 -4.41 12.17 29.90 0.36 -4.04 16 8 C 0.15 1.59 12.80 -88.95 -1.14 0.45 16 9 N -0.47 -5.25 3.21 -125.58 -0.40 -5.66 16 10 C 0.07 0.47 11.09 59.85 0.66 1.13 16 11 C 0.47 11.01 6.75 -10.98 -0.07 10.93 16 12 O -0.56 -14.78 15.92 5.54 0.09 -14.69 16 13 N -0.45 -10.91 2.72 -122.19 -0.33 -11.24 16 14 C 0.05 1.01 7.61 59.85 0.46 1.46 16 15 C -0.32 -8.83 9.51 -14.93 -0.14 -8.97 16 16 H 0.11 3.53 7.76 -52.49 -0.41 3.12 16 17 C 0.06 1.63 5.23 -17.47 -0.09 1.54 16 18 N -0.86 -24.53 13.96 55.50 0.77 -23.75 16 19 Si 0.88 20.27 24.10 -169.99 -4.10 16.18 16 20 H -0.27 -5.78 6.81 56.52 0.38 -5.40 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.07 6.78 56.52 0.38 -5.69 16 23 H 0.08 1.31 5.92 -51.93 -0.31 1.01 16 24 H 0.07 1.18 7.57 -51.93 -0.39 0.78 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.22 1.20 8.06 -52.49 -0.42 0.77 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.65 7.86 -51.93 -0.41 0.24 16 30 H 0.05 0.90 5.08 -51.93 -0.26 0.63 16 31 H 0.07 1.09 5.95 -51.93 -0.31 0.79 16 32 H 0.08 1.64 6.69 -51.93 -0.35 1.29 16 33 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 288.55 15.07 4.35 4.35 Total: -1.00 -34.41 288.55 -5.52 -39.93 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -3.61 Total: 0.57 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -0.73 Total: 4.26 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.70 Total: -49.34 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.09 Total: -14.69 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.10 Total: 16.18 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.21 Total: -1.25 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -34.41 -5.52 -39.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318118309.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.972 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds