Wall clock time and date at job start Mon Mar 30 2020 01:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 120.00018 * 2 1 4 4 H 1.48500 * 109.46787 * 270.00224 * 3 2 1 5 5 H 1.48504 * 109.46925 * 29.99464 * 3 2 1 6 6 H 1.48496 * 109.47123 * 149.99979 * 3 2 1 7 7 C 1.38956 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99647 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99852 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99867 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99650 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00282 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.47259 * 179.97438 * 12 10 9 14 14 C 1.34223 * 116.99758 * 180.02562 * 13 12 10 15 15 O 1.20820 * 120.00419 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99726 * 180.02562 * 14 13 12 17 17 H 1.08997 * 109.60225 * 300.31917 * 16 14 13 18 18 C 1.53347 * 109.60195 * 180.02562 * 16 14 13 19 19 C 1.53063 * 108.42518 * 172.54702 * 18 16 14 20 20 C 1.50183 * 109.88769 * 48.91630 * 19 18 16 21 21 O 1.21281 * 118.24998 * 162.37960 * 20 19 18 22 22 N 1.33355 * 123.50397 * 342.37540 * 20 19 18 23 23 C 1.45749 * 124.10803 * 2.27573 * 22 20 19 24 24 H 0.96998 * 120.00527 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00106 * 359.97438 * 9 7 2 26 26 H 1.08999 * 109.46815 * 59.99977 * 12 10 9 27 27 H 1.09002 * 109.47013 * 299.99731 * 12 10 9 28 28 H 1.09007 * 109.67147 * 292.27941 * 18 16 14 29 29 H 1.09000 * 109.67555 * 52.80863 * 18 16 14 30 30 H 1.09002 * 109.40155 * 169.02572 * 19 18 16 31 31 H 1.09001 * 109.40593 * 288.76836 * 19 18 16 32 32 H 0.97002 * 117.94064 * 182.24653 * 22 20 19 33 33 H 1.09005 * 109.29757 * 220.58879 * 23 22 20 34 34 H 1.08996 * 109.13850 * 101.10184 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8630 0.0000 13 8 2.1874 -5.9666 -0.0005 14 6 1.6744 -7.2069 -0.0016 15 8 0.4766 -7.3653 -0.0017 16 6 2.5925 -8.4020 -0.0016 17 1 3.2270 -8.3757 -0.8875 18 6 1.7603 -9.6900 -0.0036 19 6 2.7074 -10.8776 -0.1919 20 6 3.8605 -10.7681 0.7640 21 8 4.5216 -11.7612 0.9821 22 7 4.1963 -9.6372 1.3858 23 6 3.4638 -8.3840 1.2550 24 1 -0.4851 0.8400 -0.0004 25 1 0.3534 -2.3907 0.0005 26 1 0.6176 -4.9205 -0.8903 27 1 0.6169 -4.9209 0.8897 28 1 1.2332 -9.7879 0.9455 29 1 1.0409 -9.6609 -0.8220 30 1 2.1671 -11.8052 -0.0024 31 1 3.0839 -10.8820 -1.2148 32 1 4.9768 -9.6496 1.9616 33 1 4.1719 -7.5578 1.1904 34 1 2.8298 -8.2475 2.1310 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318340866.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:31 Heat of formation + Delta-G solvation = -166.522974 kcal Electronic energy + Delta-G solvation = -20103.479900 eV Core-core repulsion = 16615.151664 eV Total energy + Delta-G solvation = -3488.328236 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.05774 -40.01411 -38.26519 -36.81145 -36.13837 -34.06522 -33.36758 -31.45599 -30.70538 -28.35005 -25.18460 -24.77185 -23.68347 -21.26040 -19.67503 -19.44315 -18.14711 -18.10069 -17.31325 -16.65901 -16.32002 -16.10521 -15.73388 -15.33352 -14.68912 -14.56884 -14.45659 -14.01208 -13.90189 -13.59269 -13.17023 -12.44901 -12.36805 -12.14034 -11.96993 -11.67462 -11.61750 -11.43124 -11.17908 -10.57548 -10.54078 -10.48379 -10.34209 -10.04843 -9.66071 -9.41596 -8.59628 -8.14261 -6.55459 -3.97749 2.05956 2.34707 2.48365 2.98595 3.09214 3.20179 3.25885 3.66947 4.03156 4.13022 4.22891 4.25499 4.37563 4.73967 4.81606 4.96043 5.01900 5.09213 5.22867 5.29868 5.39221 5.47510 5.57854 5.60695 5.73917 5.97691 6.43930 6.47167 6.98745 7.42597 7.66609 7.88709 7.90142 8.42011 9.01437 9.33101 9.82499 10.61637 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.048694 B = 0.003198 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.880166 B = 8753.531801 C = 9199.883001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.437 3.563 11 O -0.577 6.577 12 C 0.060 3.940 13 O -0.323 6.323 14 C 0.467 3.533 15 O -0.505 6.505 16 C -0.096 4.096 17 H 0.121 0.879 18 C -0.109 4.109 19 C -0.134 4.134 20 C 0.518 3.482 21 O -0.559 6.559 22 N -0.716 5.716 23 C 0.118 3.882 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.404 0.596 33 H 0.101 0.899 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 -15.492 0.448 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.188 5.188 10 C 0.221 3.779 11 O -0.461 6.461 12 C -0.017 4.017 13 O -0.237 6.237 14 C 0.308 3.692 15 O -0.393 6.393 16 C -0.116 4.116 17 H 0.139 0.861 18 C -0.147 4.147 19 C -0.174 4.174 20 C 0.305 3.695 21 O -0.438 6.438 22 N -0.369 5.369 23 C -0.007 4.007 24 H 0.084 0.916 25 H 0.229 0.771 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.241 0.759 33 H 0.119 0.881 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.630 -15.835 0.421 15.924 hybrid contribution -0.226 1.099 0.161 1.134 sum 1.404 -14.736 0.582 14.814 Atomic orbital electron populations 1.69607 1.06024 1.28577 1.49470 1.25320 0.95684 0.99908 0.96781 0.85796 0.79247 0.80372 0.78539 1.20230 1.20782 1.19240 1.19728 0.93491 0.81729 1.48327 0.87576 1.41710 1.09389 1.04112 1.63631 1.19297 0.88340 0.84049 0.86181 1.90565 1.13370 1.86766 1.55393 1.22793 0.90807 0.84502 1.03622 1.86544 1.40446 1.14114 1.82609 1.23215 0.88309 0.84722 0.72917 1.90677 1.16570 1.86761 1.45256 1.21303 0.97079 0.91338 1.01845 0.86126 1.21615 0.97400 0.90484 1.05207 1.21677 0.94848 1.00763 1.00087 1.20243 0.85792 0.82399 0.81044 1.90771 1.53688 1.35095 1.64255 1.45430 1.32307 1.09948 1.49170 1.21320 0.96132 0.86709 0.96509 0.91563 0.77147 0.89430 0.89414 0.89983 0.88974 0.87376 0.87712 0.75941 0.88107 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.46 13.05 55.50 0.72 -22.74 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.19 29.55 -169.99 -5.02 15.16 16 4 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.55 -13.39 5.29 -10.96 -0.06 -13.45 16 10 C 0.44 9.96 7.86 -10.99 -0.09 9.88 16 11 O -0.58 -15.24 16.08 -14.12 -0.23 -15.47 16 12 C 0.06 1.05 5.94 36.00 0.21 1.26 16 13 O -0.32 -5.25 9.70 -45.88 -0.45 -5.70 16 14 C 0.47 6.13 7.24 36.01 0.26 6.39 16 15 O -0.50 -7.57 15.64 -18.75 -0.29 -7.86 16 16 C -0.10 -0.88 2.70 -91.63 -0.25 -1.13 16 17 H 0.12 0.96 8.12 -51.93 -0.42 0.54 16 18 C -0.11 -0.86 4.71 -26.52 -0.12 -0.98 16 19 C -0.13 -0.99 6.03 -28.10 -0.17 -1.16 16 20 C 0.52 5.33 7.71 -11.87 -0.09 5.24 16 21 O -0.56 -8.01 17.78 5.56 0.10 -7.92 16 22 N -0.72 -6.16 5.45 -61.39 -0.33 -6.49 16 23 C 0.12 0.99 6.43 -4.49 -0.03 0.96 16 24 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 25 H 0.39 9.09 7.90 -40.82 -0.32 8.76 16 26 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 27 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 28 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.09 0.71 7.90 -51.93 -0.41 0.30 16 30 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.40 3.12 8.80 -40.82 -0.36 2.76 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 LS Contribution 302.79 15.07 4.56 4.56 Total: -1.00 -33.44 302.79 -5.49 -38.93 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -3.98 Total: 8.22 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: -0.51 Total: 12.75 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.33 Total: -42.69 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.87 Total: -36.95 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.44 -5.49 -38.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318340866.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.590 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds