Wall clock time and date at job start Mon Mar 30 2020 01:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 O 1.45209 * 109.46951 * 179.97438 * 12 10 9 14 14 C 1.34223 * 116.99725 * 179.97438 * 13 12 10 15 15 O 1.20820 * 120.00620 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99666 * 179.97438 * 14 13 12 17 17 H 1.09004 * 109.60243 * 59.67509 * 16 14 13 18 18 C 1.53347 * 109.60489 * 179.97438 * 16 14 13 19 19 C 1.53067 * 108.42652 * 187.28451 * 18 16 14 20 20 C 1.50171 * 109.89108 * 311.10367 * 19 18 16 21 21 O 1.21287 * 118.24235 * 197.55888 * 20 19 18 22 22 N 1.33353 * 123.51006 * 17.57680 * 20 19 18 23 23 C 1.45747 * 124.10720 * 357.78432 * 22 20 19 24 24 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 27 27 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 28 28 H 1.09004 * 109.67185 * 307.02727 * 18 16 14 29 29 H 1.09002 * 109.66973 * 67.51612 * 18 16 14 30 30 H 1.09001 * 109.39465 * 71.23230 * 19 18 16 31 31 H 1.09001 * 109.39607 * 190.96974 * 19 18 16 32 32 H 0.97003 * 117.94147 * 177.77959 * 22 20 19 33 33 H 1.09003 * 109.30039 * 258.76207 * 23 22 20 34 34 H 1.09000 * 109.30454 * 139.38558 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 8 2.1873 -5.9666 0.0183 14 6 1.6741 -7.2069 0.0248 15 8 0.4764 -7.3652 0.0264 16 6 2.5922 -8.4021 0.0300 17 1 3.2267 -8.3719 0.9158 18 6 1.7599 -9.6900 0.0376 19 6 2.7075 -10.8772 0.2269 20 6 3.8585 -10.7702 -0.7317 21 8 4.5198 -11.7637 -0.9477 22 7 4.1925 -9.6412 -1.3579 23 6 3.4605 -8.3876 -1.2286 24 1 -0.4850 0.8400 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6167 -4.9162 0.9030 27 1 0.6174 -4.9252 -0.8769 28 1 1.0425 -9.6585 0.8577 29 1 1.2301 -9.7901 -0.9097 30 1 3.0863 -10.8785 1.2490 31 1 2.1666 -11.8052 0.0413 32 1 4.9717 -9.6553 -1.9355 33 1 2.8247 -8.2498 -2.1033 34 1 4.1687 -7.5613 -1.1682 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318340867.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:34 Heat of formation + Delta-G solvation = -166.488045 kcal Electronic energy + Delta-G solvation = -20104.001301 eV Core-core repulsion = 16615.674580 eV Total energy + Delta-G solvation = -3488.326722 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05785 -40.01276 -38.26416 -36.80958 -36.13734 -34.06463 -33.36711 -31.45563 -30.70738 -28.34885 -25.18329 -24.77139 -23.68285 -21.25892 -19.67414 -19.44269 -18.14629 -18.10111 -17.31391 -16.65904 -16.31962 -16.10488 -15.73290 -15.33214 -14.68834 -14.56685 -14.45321 -14.01702 -13.90188 -13.59278 -13.16714 -12.44806 -12.36706 -12.13939 -11.97072 -11.67182 -11.61719 -11.43075 -11.15755 -10.57443 -10.53839 -10.53151 -10.33785 -10.04845 -9.65006 -9.41562 -8.59593 -8.14167 -6.55286 -3.97672 2.06058 2.34703 2.48362 2.98587 3.11386 3.19594 3.23865 3.67098 4.03233 4.13058 4.22861 4.25664 4.37438 4.74051 4.81441 4.96061 5.01911 5.09278 5.22926 5.29898 5.39303 5.47552 5.57919 5.60764 5.73994 5.97752 6.43939 6.47199 6.98772 7.42477 7.66617 7.88583 7.90161 8.42121 9.01392 9.33114 9.82570 10.61738 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.048717 B = 0.003198 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.611071 B = 8753.038917 C = 9198.757082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.437 3.563 11 O -0.577 6.577 12 C 0.060 3.940 13 O -0.323 6.323 14 C 0.467 3.533 15 O -0.505 6.505 16 C -0.096 4.096 17 H 0.121 0.879 18 C -0.109 4.109 19 C -0.134 4.134 20 C 0.518 3.482 21 O -0.559 6.559 22 N -0.716 5.716 23 C 0.118 3.882 24 H 0.275 0.725 25 H 0.395 0.605 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.404 0.596 33 H 0.075 0.925 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.159 -15.476 -0.380 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.188 5.188 10 C 0.221 3.779 11 O -0.461 6.461 12 C -0.017 4.017 13 O -0.237 6.237 14 C 0.308 3.692 15 O -0.393 6.393 16 C -0.115 4.115 17 H 0.139 0.861 18 C -0.147 4.147 19 C -0.174 4.174 20 C 0.305 3.695 21 O -0.438 6.438 22 N -0.368 5.368 23 C -0.007 4.007 24 H 0.085 0.915 25 H 0.229 0.771 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.241 0.759 33 H 0.093 0.907 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.604 -15.816 -0.347 15.901 hybrid contribution -0.215 1.097 -0.175 1.131 sum 1.389 -14.719 -0.523 14.794 Atomic orbital electron populations 1.69603 1.06020 1.28682 1.49387 1.25317 0.95686 0.99904 0.96758 0.85854 0.78768 0.80023 0.79231 1.19720 1.20841 1.19716 1.19682 0.93467 0.81747 1.48455 0.87627 1.41705 1.09385 1.04102 1.63624 1.19294 0.88338 0.84046 0.86196 1.90563 1.13372 1.86762 1.55408 1.22794 0.90806 0.84501 1.03620 1.86545 1.40447 1.14116 1.82607 1.23222 0.88313 0.84730 0.72918 1.90677 1.16573 1.86764 1.45255 1.21309 0.97092 0.91332 1.01814 0.86110 1.21616 0.97390 0.90492 1.05212 1.21674 0.94872 1.00770 1.00052 1.20241 0.85766 0.82395 0.81071 1.90772 1.53620 1.35005 1.64416 1.45422 1.32440 1.10029 1.48939 1.21311 0.96185 0.86699 0.96495 0.91509 0.77143 0.89421 0.89427 0.88980 0.89982 0.87711 0.87372 0.75942 0.90666 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.47 13.05 55.50 0.72 -22.75 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.20 29.55 -169.99 -5.02 15.17 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 8 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.55 -13.39 5.29 -10.96 -0.06 -13.45 16 10 C 0.44 9.97 7.86 -10.99 -0.09 9.88 16 11 O -0.58 -15.25 16.08 -14.11 -0.23 -15.48 16 12 C 0.06 1.05 5.94 36.00 0.21 1.26 16 13 O -0.32 -5.25 9.70 -45.88 -0.45 -5.70 16 14 C 0.47 6.13 7.23 36.01 0.26 6.39 16 15 O -0.50 -7.57 15.65 -18.75 -0.29 -7.87 16 16 C -0.10 -0.88 2.70 -91.63 -0.25 -1.13 16 17 H 0.12 0.96 8.12 -51.93 -0.42 0.54 16 18 C -0.11 -0.86 4.71 -26.52 -0.12 -0.98 16 19 C -0.13 -0.99 6.03 -28.10 -0.17 -1.16 16 20 C 0.52 5.34 7.71 -11.87 -0.09 5.24 16 21 O -0.56 -8.02 17.78 5.55 0.10 -7.92 16 22 N -0.72 -6.16 5.45 -61.39 -0.33 -6.50 16 23 C 0.12 0.99 6.42 -4.49 -0.03 0.96 16 24 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 25 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 26 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 27 H 0.09 1.38 8.13 -51.93 -0.42 0.95 16 28 H 0.09 0.71 7.90 -51.93 -0.41 0.30 16 29 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.40 3.13 8.80 -40.82 -0.36 2.77 16 33 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 302.79 15.07 4.56 4.56 Total: -1.00 -33.42 302.79 -5.49 -38.91 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -3.98 Total: 8.26 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: -0.52 Total: 12.74 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.33 Total: -42.70 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.87 Total: -36.96 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.42 -5.49 -38.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318340867.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.574 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds