Wall clock time and date at job start Mon Mar 30 2020 01:32:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31414 * 1
3 3 Si 1.86795 * 120.00105 * 2 1
4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1
5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1
6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1
7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1
9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1
10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2
11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7
12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7
13 13 O 1.45209 * 109.46951 * 179.97438 * 12 10 9
14 14 C 1.34223 * 116.99725 * 179.97438 * 13 12 10
15 15 O 1.20820 * 120.00620 * 359.97438 * 14 13 12
16 16 C 1.50706 * 119.99666 * 179.97438 * 14 13 12
17 17 H 1.09004 * 109.60243 * 59.67509 * 16 14 13
18 18 C 1.53347 * 109.60489 * 179.97438 * 16 14 13
19 19 C 1.53067 * 108.42652 * 187.28451 * 18 16 14
20 20 C 1.50171 * 109.89108 * 311.10367 * 19 18 16
21 21 O 1.21287 * 118.24235 * 197.55888 * 20 19 18
22 22 N 1.33353 * 123.51006 * 17.57680 * 20 19 18
23 23 C 1.45747 * 124.10720 * 357.78432 * 22 20 19
24 24 H 0.96999 * 119.99863 * 0.02562 * 1 2 3
25 25 H 0.97001 * 119.99681 * 359.97438 * 9 7 2
26 26 H 1.09003 * 109.47112 * 299.99065 * 12 10 9
27 27 H 1.08993 * 109.47916 * 59.99687 * 12 10 9
28 28 H 1.09004 * 109.67185 * 307.02727 * 18 16 14
29 29 H 1.09002 * 109.66973 * 67.51612 * 18 16 14
30 30 H 1.09001 * 109.39465 * 71.23230 * 19 18 16
31 31 H 1.09001 * 109.39607 * 190.96974 * 19 18 16
32 32 H 0.97003 * 117.94147 * 177.77959 * 22 20 19
33 33 H 1.09003 * 109.30039 * 258.76207 * 23 22 20
34 34 H 1.09000 * 109.30454 * 139.38558 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 3.1020 1.6963 -1.2124
5 1 1.2832 2.7465 -0.0006
6 1 3.1019 1.6964 1.2126
7 6 2.0089 -1.2034 0.0005
8 1 3.0889 -1.2034 0.0010
9 7 1.3233 -2.3907 0.0005
10 6 1.9973 -3.5579 0.0067
11 8 3.2102 -3.5580 0.0071
12 6 1.2437 -4.8629 0.0129
13 8 2.1873 -5.9666 0.0183
14 6 1.6741 -7.2069 0.0248
15 8 0.4764 -7.3652 0.0264
16 6 2.5922 -8.4021 0.0300
17 1 3.2267 -8.3719 0.9158
18 6 1.7599 -9.6900 0.0376
19 6 2.7075 -10.8772 0.2269
20 6 3.8585 -10.7702 -0.7317
21 8 4.5198 -11.7637 -0.9477
22 7 4.1925 -9.6412 -1.3579
23 6 3.4605 -8.3876 -1.2286
24 1 -0.4850 0.8400 -0.0004
25 1 0.3533 -2.3906 0.0005
26 1 0.6167 -4.9162 0.9030
27 1 0.6174 -4.9252 -0.8769
28 1 1.0425 -9.6585 0.8577
29 1 1.2301 -9.7901 -0.9097
30 1 3.0863 -10.8785 1.2490
31 1 2.1666 -11.8052 0.0413
32 1 4.9717 -9.6553 -1.9355
33 1 2.8247 -8.2498 -2.1033
34 1 4.1687 -7.5613 -1.1682
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001318340867.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:32:34
Heat of formation + Delta-G solvation = -166.488045 kcal
Electronic energy + Delta-G solvation = -20104.001301 eV
Core-core repulsion = 16615.674580 eV
Total energy + Delta-G solvation = -3488.326722 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 270.109 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.05785 -40.01276 -38.26416 -36.80958 -36.13734 -34.06463 -33.36711 -31.45563
-30.70738 -28.34885 -25.18329 -24.77139 -23.68285 -21.25892 -19.67414 -19.44269
-18.14629 -18.10111 -17.31391 -16.65904 -16.31962 -16.10488 -15.73290 -15.33214
-14.68834 -14.56685 -14.45321 -14.01702 -13.90188 -13.59278 -13.16714 -12.44806
-12.36706 -12.13939 -11.97072 -11.67182 -11.61719 -11.43075 -11.15755 -10.57443
-10.53839 -10.53151 -10.33785 -10.04845 -9.65006 -9.41562 -8.59593 -8.14167
-6.55286 -3.97672 2.06058 2.34703 2.48362 2.98587 3.11386 3.19594
3.23865 3.67098 4.03233 4.13058 4.22861 4.25664 4.37438 4.74051
4.81441 4.96061 5.01911 5.09278 5.22926 5.29898 5.39303 5.47552
5.57919 5.60764 5.73994 5.97752 6.43939 6.47199 6.98772 7.42477
7.66617 7.88583 7.90161 8.42121 9.01392 9.33114 9.82570 10.61738
Molecular weight = 270.11amu
Principal moments of inertia in cm(-1)
A = 0.048717 B = 0.003198 C = 0.003043
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 574.611071 B = 8753.038917 C = 9198.757082
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.026 3.974
3 Si 0.935 3.065
4 H -0.272 1.272
5 H -0.283 1.283
6 H -0.272 1.272
7 C -0.304 4.304
8 H 0.106 0.894
9 N -0.551 5.551
10 C 0.437 3.563
11 O -0.577 6.577
12 C 0.060 3.940
13 O -0.323 6.323
14 C 0.467 3.533
15 O -0.505 6.505
16 C -0.096 4.096
17 H 0.121 0.879
18 C -0.109 4.109
19 C -0.134 4.134
20 C 0.518 3.482
21 O -0.559 6.559
22 N -0.716 5.716
23 C 0.118 3.882
24 H 0.275 0.725
25 H 0.395 0.605
26 H 0.088 0.912
27 H 0.088 0.912
28 H 0.092 0.908
29 H 0.081 0.919
30 H 0.105 0.895
31 H 0.108 0.892
32 H 0.404 0.596
33 H 0.075 0.925
34 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.159 -15.476 -0.380 15.524
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.537 5.537
2 C -0.177 4.177
3 Si 0.761 3.239
4 H -0.197 1.197
5 H -0.208 1.208
6 H -0.197 1.197
7 C -0.434 4.434
8 H 0.124 0.876
9 N -0.188 5.188
10 C 0.221 3.779
11 O -0.461 6.461
12 C -0.017 4.017
13 O -0.237 6.237
14 C 0.308 3.692
15 O -0.393 6.393
16 C -0.115 4.115
17 H 0.139 0.861
18 C -0.147 4.147
19 C -0.174 4.174
20 C 0.305 3.695
21 O -0.438 6.438
22 N -0.368 5.368
23 C -0.007 4.007
24 H 0.085 0.915
25 H 0.229 0.771
26 H 0.106 0.894
27 H 0.106 0.894
28 H 0.110 0.890
29 H 0.100 0.900
30 H 0.123 0.877
31 H 0.126 0.874
32 H 0.241 0.759
33 H 0.093 0.907
34 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 1.604 -15.816 -0.347 15.901
hybrid contribution -0.215 1.097 -0.175 1.131
sum 1.389 -14.719 -0.523 14.794
Atomic orbital electron populations
1.69603 1.06020 1.28682 1.49387 1.25317 0.95686 0.99904 0.96758
0.85854 0.78768 0.80023 0.79231 1.19720 1.20841 1.19716 1.19682
0.93467 0.81747 1.48455 0.87627 1.41705 1.09385 1.04102 1.63624
1.19294 0.88338 0.84046 0.86196 1.90563 1.13372 1.86762 1.55408
1.22794 0.90806 0.84501 1.03620 1.86545 1.40447 1.14116 1.82607
1.23222 0.88313 0.84730 0.72918 1.90677 1.16573 1.86764 1.45255
1.21309 0.97092 0.91332 1.01814 0.86110 1.21616 0.97390 0.90492
1.05212 1.21674 0.94872 1.00770 1.00052 1.20241 0.85766 0.82395
0.81071 1.90772 1.53620 1.35005 1.64416 1.45422 1.32440 1.10029
1.48939 1.21311 0.96185 0.86699 0.96495 0.91509 0.77143 0.89421
0.89427 0.88980 0.89982 0.87711 0.87372 0.75942 0.90666 0.88130
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -23.47 13.05 55.50 0.72 -22.75 16
2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16
3 Si 0.93 20.20 29.55 -169.99 -5.02 15.17 16
4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16
5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16
6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16
7 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16
8 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16
9 N -0.55 -13.39 5.29 -10.96 -0.06 -13.45 16
10 C 0.44 9.97 7.86 -10.99 -0.09 9.88 16
11 O -0.58 -15.25 16.08 -14.11 -0.23 -15.48 16
12 C 0.06 1.05 5.94 36.00 0.21 1.26 16
13 O -0.32 -5.25 9.70 -45.88 -0.45 -5.70 16
14 C 0.47 6.13 7.23 36.01 0.26 6.39 16
15 O -0.50 -7.57 15.65 -18.75 -0.29 -7.87 16
16 C -0.10 -0.88 2.70 -91.63 -0.25 -1.13 16
17 H 0.12 0.96 8.12 -51.93 -0.42 0.54 16
18 C -0.11 -0.86 4.71 -26.52 -0.12 -0.98 16
19 C -0.13 -0.99 6.03 -28.10 -0.17 -1.16 16
20 C 0.52 5.34 7.71 -11.87 -0.09 5.24 16
21 O -0.56 -8.02 17.78 5.55 0.10 -7.92 16
22 N -0.72 -6.16 5.45 -61.39 -0.33 -6.50 16
23 C 0.12 0.99 6.42 -4.49 -0.03 0.96 16
24 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16
25 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16
26 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16
27 H 0.09 1.38 8.13 -51.93 -0.42 0.95 16
28 H 0.09 0.71 7.90 -51.93 -0.41 0.30 16
29 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16
30 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16
31 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16
32 H 0.40 3.13 8.80 -40.82 -0.36 2.77 16
33 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16
34 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16
LS Contribution 302.79 15.07 4.56 4.56
Total: -1.00 -33.42 302.79 -5.49 -38.91
By element:
Atomic # 1 Polarization: 12.24 SS G_CDS: -3.98 Total: 8.26 kcal
Atomic # 6 Polarization: 13.26 SS G_CDS: -0.52 Total: 12.74 kcal
Atomic # 7 Polarization: -43.03 SS G_CDS: 0.33 Total: -42.70 kcal
Atomic # 8 Polarization: -36.09 SS G_CDS: -0.87 Total: -36.96 kcal
Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal
Total LS contribution 4.56 Total: 4.56 kcal
Total: -33.42 -5.49 -38.91 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001318340867.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -127.574 kcal
(2) G-P(sol) polarization free energy of solvation -33.424 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.998 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.490 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal
(6) G-S(sol) free energy of system = (1) + (5) -166.488 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds