Wall clock time and date at job start Mon Mar 30 2020 01:32:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31414 * 1
3 3 Si 1.86795 * 120.00105 * 2 1
4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1
5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1
6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1
7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1
9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1
10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2
11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7
12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7
13 13 O 1.45209 * 109.46951 * 179.97438 * 12 10 9
14 14 C 1.34223 * 116.99725 * 179.97438 * 13 12 10
15 15 O 1.20820 * 120.00620 * 359.97438 * 14 13 12
16 16 C 1.50706 * 119.99666 * 179.97438 * 14 13 12
17 17 H 1.09004 * 109.60243 * 59.67509 * 16 14 13
18 18 C 1.53347 * 109.60489 * 179.97438 * 16 14 13
19 19 C 1.53067 * 108.42652 * 187.28451 * 18 16 14
20 20 C 1.50171 * 109.89108 * 311.10367 * 19 18 16
21 21 O 1.21287 * 118.24235 * 197.55888 * 20 19 18
22 22 N 1.33353 * 123.51006 * 17.57680 * 20 19 18
23 23 C 1.45747 * 124.10720 * 357.78432 * 22 20 19
24 24 H 0.96999 * 119.99863 * 0.02562 * 1 2 3
25 25 H 0.97001 * 119.99681 * 359.97438 * 9 7 2
26 26 H 1.09003 * 109.47112 * 299.99065 * 12 10 9
27 27 H 1.08993 * 109.47916 * 59.99687 * 12 10 9
28 28 H 1.09004 * 109.67185 * 307.02727 * 18 16 14
29 29 H 1.09002 * 109.66973 * 67.51612 * 18 16 14
30 30 H 1.09001 * 109.39465 * 71.23230 * 19 18 16
31 31 H 1.09001 * 109.39607 * 190.96974 * 19 18 16
32 32 H 0.97003 * 117.94147 * 177.77959 * 22 20 19
33 33 H 1.09003 * 109.30039 * 258.76207 * 23 22 20
34 34 H 1.09000 * 109.30454 * 139.38558 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 3.1020 1.6963 -1.2124
5 1 1.2832 2.7465 -0.0006
6 1 3.1019 1.6964 1.2126
7 6 2.0089 -1.2034 0.0005
8 1 3.0889 -1.2034 0.0010
9 7 1.3233 -2.3907 0.0005
10 6 1.9973 -3.5579 0.0067
11 8 3.2102 -3.5580 0.0071
12 6 1.2437 -4.8629 0.0129
13 8 2.1873 -5.9666 0.0183
14 6 1.6741 -7.2069 0.0248
15 8 0.4764 -7.3652 0.0264
16 6 2.5922 -8.4021 0.0300
17 1 3.2267 -8.3719 0.9158
18 6 1.7599 -9.6900 0.0376
19 6 2.7075 -10.8772 0.2269
20 6 3.8585 -10.7702 -0.7317
21 8 4.5198 -11.7637 -0.9477
22 7 4.1925 -9.6412 -1.3579
23 6 3.4605 -8.3876 -1.2286
24 1 -0.4850 0.8400 -0.0004
25 1 0.3533 -2.3906 0.0005
26 1 0.6167 -4.9162 0.9030
27 1 0.6174 -4.9252 -0.8769
28 1 1.0425 -9.6585 0.8577
29 1 1.2301 -9.7901 -0.9097
30 1 3.0863 -10.8785 1.2490
31 1 2.1666 -11.8052 0.0413
32 1 4.9717 -9.6553 -1.9355
33 1 2.8247 -8.2498 -2.1033
34 1 4.1687 -7.5613 -1.1682
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001318340867.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:32:33
Heat of formation + Delta-G solvation = -191.089660 kcal
Electronic energy + Delta-G solvation = -20105.068108 eV
Core-core repulsion = 16615.674580 eV
Total energy + Delta-G solvation = -3489.393528 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 270.109 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-42.04511 -41.00234 -40.01232 -37.87421 -37.22447 -36.01514 -34.07581 -33.40289
-31.57428 -29.81114 -26.67514 -25.80343 -24.60983 -22.24722 -21.40995 -20.23966
-20.05756 -19.10172 -18.32256 -17.79996 -17.69325 -17.15297 -16.94218 -16.55394
-16.16243 -15.83932 -15.71424 -15.14593 -14.99410 -14.67388 -14.42569 -13.82642
-13.69588 -13.54415 -12.98398 -12.93446 -12.87681 -12.47682 -12.35080 -12.12864
-12.05588 -11.83927 -11.64545 -11.55349 -10.87569 -10.48897 -10.19008 -10.10505
-8.51493 -6.01899 1.01989 1.31272 1.38634 1.45318 1.55648 1.57925
1.89384 2.23196 2.31368 3.01906 3.14552 3.40247 3.50582 3.54628
3.68032 3.95799 4.14948 4.18485 4.20453 4.25100 4.38356 4.56633
4.65715 4.84624 4.96365 5.11529 5.31888 5.38173 5.73737 5.90234
6.24492 6.46194 6.60517 7.04267 7.13496 7.41934 7.95171 8.65216
Molecular weight = 270.11amu
Principal moments of inertia in cm(-1)
A = 0.048717 B = 0.003198 C = 0.003043
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 574.611071 B = 8753.038917 C = 9198.757082
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.916 5.916
2 C -0.008 4.008
3 Si 0.996 3.004
4 H -0.270 1.270
5 H -0.271 1.271
6 H -0.270 1.270
7 C -0.338 4.338
8 H 0.085 0.915
9 N -0.559 5.559
10 C 0.436 3.564
11 O -0.617 6.617
12 C 0.071 3.929
13 O -0.339 6.339
14 C 0.472 3.528
15 O -0.521 6.521
16 C -0.091 4.091
17 H 0.138 0.862
18 C -0.102 4.102
19 C -0.125 4.125
20 C 0.514 3.486
21 O -0.605 6.605
22 N -0.708 5.708
23 C 0.121 3.879
24 H 0.280 0.720
25 H 0.400 0.600
26 H 0.107 0.893
27 H 0.108 0.892
28 H 0.098 0.902
29 H 0.079 0.921
30 H 0.123 0.877
31 H 0.119 0.881
32 H 0.408 0.592
33 H 0.081 0.919
34 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.709 -15.773 -0.099 15.789
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.556 5.556
2 C -0.209 4.209
3 Si 0.819 3.181
4 H -0.195 1.195
5 H -0.195 1.195
6 H -0.195 1.195
7 C -0.467 4.467
8 H 0.103 0.897
9 N -0.197 5.197
10 C 0.223 3.777
11 O -0.504 6.504
12 C -0.006 4.006
13 O -0.254 6.254
14 C 0.315 3.685
15 O -0.410 6.410
16 C -0.110 4.110
17 H 0.156 0.844
18 C -0.140 4.140
19 C -0.164 4.164
20 C 0.303 3.697
21 O -0.487 6.487
22 N -0.359 5.359
23 C -0.004 4.004
24 H 0.090 0.910
25 H 0.234 0.766
26 H 0.125 0.875
27 H 0.126 0.874
28 H 0.117 0.883
29 H 0.098 0.902
30 H 0.141 0.859
31 H 0.138 0.862
32 H 0.245 0.755
33 H 0.099 0.901
34 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 1.121 -16.108 -0.072 16.147
hybrid contribution -0.081 1.141 -0.273 1.176
sum 1.040 -14.967 -0.346 15.008
Atomic orbital electron populations
1.69661 1.06931 1.29754 1.49231 1.26091 0.96542 1.02531 0.95712
0.84946 0.77764 0.76271 0.79143 1.19482 1.19549 1.19508 1.19684
0.92962 0.83432 1.50655 0.89698 1.41751 1.09570 1.04238 1.64103
1.20152 0.88112 0.85422 0.83991 1.90530 1.15410 1.87713 1.56705
1.22526 0.90131 0.82432 1.05508 1.86554 1.40687 1.14964 1.83233
1.23874 0.88675 0.84249 0.71750 1.90674 1.17534 1.86712 1.46043
1.21426 0.96858 0.89871 1.02832 0.84408 1.21588 0.97272 0.89667
1.05432 1.21676 0.93666 1.00969 1.00132 1.20763 0.85978 0.81900
0.81061 1.90758 1.55365 1.36515 1.66091 1.45398 1.32332 1.09765
1.48372 1.21307 0.96192 0.86414 0.96454 0.90999 0.76575 0.87492
0.87380 0.88336 0.90198 0.85884 0.86235 0.75527 0.90105 0.88018
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -47.46 13.05 21.66 0.28 -47.18 16
2 C -0.01 -0.41 5.50 84.93 0.47 0.06 16
3 Si 1.00 40.94 29.55 68.60 2.03 42.97 16
4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16
5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16
6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16
7 C -0.34 -18.38 9.68 84.04 0.81 -17.56 16
8 H 0.09 4.88 7.16 -2.91 -0.02 4.86 16
9 N -0.56 -27.39 5.29 -306.98 -1.62 -29.02 16
10 C 0.44 19.95 7.86 87.66 0.69 20.64 16
11 O -0.62 -33.05 16.08 15.73 0.25 -32.80 16
12 C 0.07 2.39 5.94 71.24 0.42 2.81 16
13 O -0.34 -10.55 9.70 -45.00 -0.44 -10.98 16
14 C 0.47 11.42 7.23 71.24 0.52 11.94 16
15 O -0.52 -14.50 15.65 21.98 0.34 -14.15 16
16 C -0.09 -1.44 2.70 -11.45 -0.03 -1.47 16
17 H 0.14 1.80 8.12 -2.39 -0.02 1.78 16
18 C -0.10 -1.33 4.71 30.73 0.14 -1.19 16
19 C -0.13 -1.54 6.03 29.70 0.18 -1.36 16
20 C 0.51 9.83 7.71 87.71 0.68 10.51 16
21 O -0.60 -16.97 17.78 -3.05 -0.05 -17.02 16
22 N -0.71 -11.15 5.45 -467.33 -2.55 -13.69 16
23 C 0.12 1.81 6.42 86.49 0.56 2.36 16
24 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16
25 H 0.40 18.44 7.90 -92.71 -0.73 17.71 16
26 H 0.11 3.20 8.13 -2.39 -0.02 3.18 16
27 H 0.11 3.20 8.13 -2.39 -0.02 3.18 16
28 H 0.10 1.23 7.90 -2.38 -0.02 1.21 16
29 H 0.08 1.11 8.13 -2.39 -0.02 1.09 16
30 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16
31 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16
32 H 0.41 5.91 8.80 -92.71 -0.82 5.09 16
33 H 0.08 1.16 8.11 -2.39 -0.02 1.14 16
34 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16
Total: -1.00 -71.75 302.79 2.29 -69.47
By element:
Atomic # 1 Polarization: 26.07 SS G_CDS: -0.39 Total: 25.67 kcal
Atomic # 6 Polarization: 22.30 SS G_CDS: 4.43 Total: 26.73 kcal
Atomic # 7 Polarization: -86.00 SS G_CDS: -3.89 Total: -89.89 kcal
Atomic # 8 Polarization: -75.06 SS G_CDS: 0.11 Total: -74.95 kcal
Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal
Total: -71.75 2.29 -69.47 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001318340867.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -121.624 kcal
(2) G-P(sol) polarization free energy of solvation -71.754 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.378 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.466 kcal
(6) G-S(sol) free energy of system = (1) + (5) -191.090 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds