Wall clock time and date at job start Mon Mar 30 2020 01:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 O 1.45209 * 109.46951 * 179.97438 * 12 10 9 14 14 C 1.34223 * 116.99725 * 179.97438 * 13 12 10 15 15 O 1.20820 * 120.00620 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99666 * 179.97438 * 14 13 12 17 17 H 1.09004 * 109.60243 * 59.67509 * 16 14 13 18 18 C 1.53347 * 109.60489 * 179.97438 * 16 14 13 19 19 C 1.53067 * 108.42652 * 187.28451 * 18 16 14 20 20 C 1.50171 * 109.89108 * 311.10367 * 19 18 16 21 21 O 1.21287 * 118.24235 * 197.55888 * 20 19 18 22 22 N 1.33353 * 123.51006 * 17.57680 * 20 19 18 23 23 C 1.45747 * 124.10720 * 357.78432 * 22 20 19 24 24 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 27 27 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 28 28 H 1.09004 * 109.67185 * 307.02727 * 18 16 14 29 29 H 1.09002 * 109.66973 * 67.51612 * 18 16 14 30 30 H 1.09001 * 109.39465 * 71.23230 * 19 18 16 31 31 H 1.09001 * 109.39607 * 190.96974 * 19 18 16 32 32 H 0.97003 * 117.94147 * 177.77959 * 22 20 19 33 33 H 1.09003 * 109.30039 * 258.76207 * 23 22 20 34 34 H 1.09000 * 109.30454 * 139.38558 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 8 2.1873 -5.9666 0.0183 14 6 1.6741 -7.2069 0.0248 15 8 0.4764 -7.3652 0.0264 16 6 2.5922 -8.4021 0.0300 17 1 3.2267 -8.3719 0.9158 18 6 1.7599 -9.6900 0.0376 19 6 2.7075 -10.8772 0.2269 20 6 3.8585 -10.7702 -0.7317 21 8 4.5198 -11.7637 -0.9477 22 7 4.1925 -9.6412 -1.3579 23 6 3.4605 -8.3876 -1.2286 24 1 -0.4850 0.8400 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6167 -4.9162 0.9030 27 1 0.6174 -4.9252 -0.8769 28 1 1.0425 -9.6585 0.8577 29 1 1.2301 -9.7901 -0.9097 30 1 3.0863 -10.8785 1.2490 31 1 2.1666 -11.8052 0.0413 32 1 4.9717 -9.6553 -1.9355 33 1 2.8247 -8.2498 -2.1033 34 1 4.1687 -7.5613 -1.1682 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318340867.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:33 Heat of formation + Delta-G solvation = -191.089660 kcal Electronic energy + Delta-G solvation = -20105.068108 eV Core-core repulsion = 16615.674580 eV Total energy + Delta-G solvation = -3489.393528 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.04511 -41.00234 -40.01232 -37.87421 -37.22447 -36.01514 -34.07581 -33.40289 -31.57428 -29.81114 -26.67514 -25.80343 -24.60983 -22.24722 -21.40995 -20.23966 -20.05756 -19.10172 -18.32256 -17.79996 -17.69325 -17.15297 -16.94218 -16.55394 -16.16243 -15.83932 -15.71424 -15.14593 -14.99410 -14.67388 -14.42569 -13.82642 -13.69588 -13.54415 -12.98398 -12.93446 -12.87681 -12.47682 -12.35080 -12.12864 -12.05588 -11.83927 -11.64545 -11.55349 -10.87569 -10.48897 -10.19008 -10.10505 -8.51493 -6.01899 1.01989 1.31272 1.38634 1.45318 1.55648 1.57925 1.89384 2.23196 2.31368 3.01906 3.14552 3.40247 3.50582 3.54628 3.68032 3.95799 4.14948 4.18485 4.20453 4.25100 4.38356 4.56633 4.65715 4.84624 4.96365 5.11529 5.31888 5.38173 5.73737 5.90234 6.24492 6.46194 6.60517 7.04267 7.13496 7.41934 7.95171 8.65216 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.048717 B = 0.003198 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.611071 B = 8753.038917 C = 9198.757082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.085 0.915 9 N -0.559 5.559 10 C 0.436 3.564 11 O -0.617 6.617 12 C 0.071 3.929 13 O -0.339 6.339 14 C 0.472 3.528 15 O -0.521 6.521 16 C -0.091 4.091 17 H 0.138 0.862 18 C -0.102 4.102 19 C -0.125 4.125 20 C 0.514 3.486 21 O -0.605 6.605 22 N -0.708 5.708 23 C 0.121 3.879 24 H 0.280 0.720 25 H 0.400 0.600 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.408 0.592 33 H 0.081 0.919 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.709 -15.773 -0.099 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.103 0.897 9 N -0.197 5.197 10 C 0.223 3.777 11 O -0.504 6.504 12 C -0.006 4.006 13 O -0.254 6.254 14 C 0.315 3.685 15 O -0.410 6.410 16 C -0.110 4.110 17 H 0.156 0.844 18 C -0.140 4.140 19 C -0.164 4.164 20 C 0.303 3.697 21 O -0.487 6.487 22 N -0.359 5.359 23 C -0.004 4.004 24 H 0.090 0.910 25 H 0.234 0.766 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.245 0.755 33 H 0.099 0.901 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.121 -16.108 -0.072 16.147 hybrid contribution -0.081 1.141 -0.273 1.176 sum 1.040 -14.967 -0.346 15.008 Atomic orbital electron populations 1.69661 1.06931 1.29754 1.49231 1.26091 0.96542 1.02531 0.95712 0.84946 0.77764 0.76271 0.79143 1.19482 1.19549 1.19508 1.19684 0.92962 0.83432 1.50655 0.89698 1.41751 1.09570 1.04238 1.64103 1.20152 0.88112 0.85422 0.83991 1.90530 1.15410 1.87713 1.56705 1.22526 0.90131 0.82432 1.05508 1.86554 1.40687 1.14964 1.83233 1.23874 0.88675 0.84249 0.71750 1.90674 1.17534 1.86712 1.46043 1.21426 0.96858 0.89871 1.02832 0.84408 1.21588 0.97272 0.89667 1.05432 1.21676 0.93666 1.00969 1.00132 1.20763 0.85978 0.81900 0.81061 1.90758 1.55365 1.36515 1.66091 1.45398 1.32332 1.09765 1.48372 1.21307 0.96192 0.86414 0.96454 0.90999 0.76575 0.87492 0.87380 0.88336 0.90198 0.85884 0.86235 0.75527 0.90105 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.46 13.05 21.66 0.28 -47.18 16 2 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 3 Si 1.00 40.94 29.55 68.60 2.03 42.97 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.34 -18.38 9.68 84.04 0.81 -17.56 16 8 H 0.09 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.56 -27.39 5.29 -306.98 -1.62 -29.02 16 10 C 0.44 19.95 7.86 87.66 0.69 20.64 16 11 O -0.62 -33.05 16.08 15.73 0.25 -32.80 16 12 C 0.07 2.39 5.94 71.24 0.42 2.81 16 13 O -0.34 -10.55 9.70 -45.00 -0.44 -10.98 16 14 C 0.47 11.42 7.23 71.24 0.52 11.94 16 15 O -0.52 -14.50 15.65 21.98 0.34 -14.15 16 16 C -0.09 -1.44 2.70 -11.45 -0.03 -1.47 16 17 H 0.14 1.80 8.12 -2.39 -0.02 1.78 16 18 C -0.10 -1.33 4.71 30.73 0.14 -1.19 16 19 C -0.13 -1.54 6.03 29.70 0.18 -1.36 16 20 C 0.51 9.83 7.71 87.71 0.68 10.51 16 21 O -0.60 -16.97 17.78 -3.05 -0.05 -17.02 16 22 N -0.71 -11.15 5.45 -467.33 -2.55 -13.69 16 23 C 0.12 1.81 6.42 86.49 0.56 2.36 16 24 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 25 H 0.40 18.44 7.90 -92.71 -0.73 17.71 16 26 H 0.11 3.20 8.13 -2.39 -0.02 3.18 16 27 H 0.11 3.20 8.13 -2.39 -0.02 3.18 16 28 H 0.10 1.23 7.90 -2.38 -0.02 1.21 16 29 H 0.08 1.11 8.13 -2.39 -0.02 1.09 16 30 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.41 5.91 8.80 -92.71 -0.82 5.09 16 33 H 0.08 1.16 8.11 -2.39 -0.02 1.14 16 34 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -71.75 302.79 2.29 -69.47 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -0.39 Total: 25.67 kcal Atomic # 6 Polarization: 22.30 SS G_CDS: 4.43 Total: 26.73 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -3.89 Total: -89.89 kcal Atomic # 8 Polarization: -75.06 SS G_CDS: 0.11 Total: -74.95 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -71.75 2.29 -69.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318340867.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.624 kcal (2) G-P(sol) polarization free energy of solvation -71.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds