Wall clock time and date at job start Mon Mar 30 2020 01:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47355 * 2 1 4 4 C 1.52999 * 109.47044 * 120.00168 * 2 1 3 5 5 N 1.46504 * 109.47162 * 174.99897 * 4 2 1 6 6 C 1.36933 * 120.00128 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00119 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00127 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00057 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00278 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46814 * 59.99295 * 10 8 6 12 12 H 1.48497 * 109.47323 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47166 * 299.99854 * 10 8 6 14 14 N 1.46506 * 109.47123 * 239.99682 * 2 1 3 15 15 C 1.46498 * 120.00319 * 300.00226 * 14 2 1 16 16 C 1.34781 * 119.99657 * 119.99776 * 14 2 1 17 17 O 1.21562 * 120.00167 * 5.40408 * 16 14 2 18 18 C 1.47754 * 119.99427 * 185.40156 * 16 14 2 19 19 C 1.39349 * 124.10974 * 186.16967 * 18 16 14 20 20 N 1.30095 * 112.14387 * 179.97438 * 19 18 16 21 21 S 1.55922 * 108.75167 * 359.97438 * 20 19 18 22 22 N 1.31488 * 124.12113 * 5.86859 * 18 16 14 23 23 H 1.08995 * 109.46697 * 300.00188 * 1 2 3 24 24 H 1.09007 * 109.46913 * 60.00004 * 1 2 3 25 25 H 1.08995 * 109.46919 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46827 * 294.99484 * 4 2 1 27 27 H 1.08999 * 109.47337 * 54.99677 * 4 2 1 28 28 H 0.97003 * 119.99460 * 0.02562 * 5 4 2 29 29 H 0.96999 * 120.00310 * 180.02562 * 9 8 6 30 30 H 1.09004 * 109.47101 * 95.33117 * 15 14 2 31 31 H 1.09005 * 109.46787 * 335.34048 * 15 14 2 32 32 H 1.08990 * 109.47281 * 215.33986 * 15 14 2 33 33 H 1.07999 * 123.93615 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1906 6 6 4.1839 -1.4380 2.2072 7 1 3.6469 -1.8425 3.0524 8 6 5.5674 -1.5372 2.1518 9 7 6.2219 -1.0438 1.1220 10 14 6.5003 -2.3708 3.5390 11 1 6.0444 -3.7783 3.6662 12 1 7.9550 -2.3470 3.2415 13 1 6.2430 -1.6502 4.8117 14 7 2.0184 -0.6907 -1.1962 15 6 1.6645 -2.0933 -1.4280 16 6 2.7932 -0.0357 -2.0834 17 8 3.1680 1.0957 -1.8441 18 6 3.1871 -0.6928 -3.3468 19 6 4.0817 -0.1475 -4.2655 20 7 4.2609 -0.9225 -5.2949 21 16 3.3898 -2.2033 -5.1157 22 7 2.7405 -1.8659 -3.7384 23 1 -0.3632 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.7517 -0.1583 2.1369 27 1 1.6054 -1.7198 1.2952 28 1 3.9824 -0.4622 0.4319 29 1 7.1886 -1.1135 1.0831 30 1 0.7913 -2.1449 -2.0785 31 1 1.4370 -2.5727 -0.4759 32 1 2.5016 -2.6056 -1.9020 33 1 4.5696 0.8075 -4.1379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319431484.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:29 Heat of formation + Delta-G solvation = 53.495374 kcal Electronic energy + Delta-G solvation = -18927.469574 eV Core-core repulsion = 15923.727671 eV Total energy + Delta-G solvation = -3003.741903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08733 -39.10436 -36.37848 -34.24577 -33.42951 -31.64226 -30.04255 -27.40542 -26.49407 -25.61720 -23.50928 -22.43210 -20.64634 -19.40047 -18.99641 -17.07185 -16.96740 -16.15246 -16.01361 -15.20738 -14.80031 -14.56511 -13.70615 -13.62146 -13.22135 -12.76704 -12.48556 -12.36173 -12.27818 -12.09295 -11.85644 -11.49571 -11.31276 -11.10311 -10.82722 -10.75245 -10.63213 -10.43262 -10.06390 -9.70616 -9.67614 -9.14792 -8.84980 -8.27846 -6.88182 -5.71250 -3.00723 0.47611 1.43069 1.66148 1.68378 3.17135 3.41137 3.45327 3.49521 3.50969 4.48800 4.61463 4.78897 5.18013 5.23317 5.42487 5.51675 5.54653 5.60216 5.65532 5.88023 5.99689 6.08307 6.18759 6.26100 6.37760 6.42590 6.52807 6.71951 6.97172 7.62445 7.71433 8.34916 8.46156 9.57575 10.16182 10.51511 11.50770 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.006322 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.466110 B = 4427.972859 C = 5328.622419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 H 0.103 0.897 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.241 4.241 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.929 5.929 10 Si 0.906 3.094 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.575 5.575 15 C 0.092 3.908 16 C 0.602 3.398 17 O -0.522 6.522 18 C 0.026 3.974 19 C 0.093 3.907 20 N -0.577 5.577 21 S 0.681 5.319 22 N -0.533 5.533 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.022 0.978 28 H 0.387 0.613 29 H 0.255 0.745 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.073 -1.981 -11.985 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.121 0.879 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.372 4.372 7 H 0.087 0.913 8 C -0.209 4.209 9 N -0.577 5.577 10 Si 0.737 3.263 11 H -0.214 1.214 12 H -0.217 1.217 13 H -0.213 1.213 14 N -0.307 5.307 15 C -0.052 4.052 16 C 0.384 3.616 17 O -0.397 6.397 18 C -0.149 4.149 19 C -0.101 4.101 20 N -0.418 5.418 21 S 0.724 5.276 22 N -0.382 5.382 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.221 0.779 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -11.030 -3.142 -12.974 17.317 hybrid contribution 1.057 0.928 1.631 2.153 sum -9.973 -2.215 -11.344 15.266 Atomic orbital electron populations 1.22056 0.94803 1.02269 1.02129 1.21509 0.93443 0.98523 0.84266 0.87926 1.21016 0.87197 0.96819 0.93482 1.42295 0.99629 1.70138 1.25181 1.19159 0.89418 1.29564 0.99101 0.91313 1.24748 0.96454 1.01669 0.98027 1.69676 1.07172 1.50706 1.30185 0.86284 0.79025 0.79199 0.81746 1.21392 1.21742 1.21265 1.47479 1.48911 1.12734 1.21534 1.21880 1.01145 0.80886 1.01243 1.16756 0.78742 0.85041 0.81064 1.90825 1.54346 1.18207 1.76351 1.22582 1.00666 0.91200 1.00464 1.23795 0.96959 1.02039 0.87347 1.72258 1.28373 1.11047 1.30093 1.79003 1.20528 1.19505 1.08590 1.73016 1.29389 1.18388 1.17455 0.91184 0.92616 0.92259 0.95196 0.96064 0.77921 0.93545 0.93041 0.90925 0.89916 0.76967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.19 37.16 0.34 -1.60 16 2 C 0.13 2.14 2.79 -67.93 -0.19 1.95 16 3 H 0.10 1.94 6.91 -51.93 -0.36 1.58 16 4 C 0.14 2.89 5.52 -4.04 -0.02 2.86 16 5 N -0.73 -18.92 5.43 -59.91 -0.33 -19.25 16 6 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 7 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 8 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 9 N -0.93 -28.91 13.06 55.49 0.72 -28.18 16 10 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 14 N -0.58 -9.92 2.24 -175.08 -0.39 -10.32 16 15 C 0.09 1.39 8.26 59.85 0.49 1.88 16 16 C 0.60 11.15 7.37 -12.37 -0.09 11.06 16 17 O -0.52 -10.98 16.15 5.31 0.09 -10.89 16 18 C 0.03 0.42 6.52 -83.71 -0.55 -0.13 16 19 C 0.09 1.35 11.23 -17.87 -0.20 1.14 16 20 N -0.58 -7.81 11.41 19.42 0.22 -7.58 16 21 S 0.68 7.56 23.69 -107.50 -2.55 5.01 16 22 N -0.53 -7.42 7.92 23.17 0.18 -7.24 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.02 0.42 6.86 -51.93 -0.36 0.06 16 28 H 0.39 10.92 7.07 -40.82 -0.29 10.63 16 29 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.05 0.66 8.10 -51.93 -0.42 0.23 16 31 H 0.07 1.10 6.54 -51.93 -0.34 0.76 16 32 H 0.08 1.34 5.88 -51.93 -0.31 1.04 16 33 H 0.21 2.79 8.06 -52.49 -0.42 2.36 16 LS Contribution 294.81 15.07 4.44 4.44 Total: -1.00 -33.53 294.81 -6.79 -40.32 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -3.70 Total: 6.25 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -0.46 Total: 9.68 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: 0.41 Total: -72.57 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Atomic # 16 Polarization: 7.56 SS G_CDS: -2.55 Total: 5.01 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.53 -6.79 -40.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319431484.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.819 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds