Wall clock time and date at job start Mon Mar 30 2020 01:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47355 * 2 1 4 4 C 1.52999 * 109.47044 * 120.00168 * 2 1 3 5 5 N 1.46504 * 109.47162 * 174.99897 * 4 2 1 6 6 C 1.36933 * 120.00128 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00119 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00127 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00057 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00278 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46814 * 59.99295 * 10 8 6 12 12 H 1.48497 * 109.47323 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47166 * 299.99854 * 10 8 6 14 14 N 1.46506 * 109.47123 * 239.99682 * 2 1 3 15 15 C 1.46498 * 120.00319 * 300.00226 * 14 2 1 16 16 C 1.34781 * 119.99657 * 119.99776 * 14 2 1 17 17 O 1.21562 * 120.00167 * 5.40408 * 16 14 2 18 18 C 1.47754 * 119.99427 * 185.40156 * 16 14 2 19 19 C 1.39349 * 124.10974 * 186.16967 * 18 16 14 20 20 N 1.30095 * 112.14387 * 179.97438 * 19 18 16 21 21 S 1.55922 * 108.75167 * 359.97438 * 20 19 18 22 22 N 1.31488 * 124.12113 * 5.86859 * 18 16 14 23 23 H 1.08995 * 109.46697 * 300.00188 * 1 2 3 24 24 H 1.09007 * 109.46913 * 60.00004 * 1 2 3 25 25 H 1.08995 * 109.46919 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46827 * 294.99484 * 4 2 1 27 27 H 1.08999 * 109.47337 * 54.99677 * 4 2 1 28 28 H 0.97003 * 119.99460 * 0.02562 * 5 4 2 29 29 H 0.96999 * 120.00310 * 180.02562 * 9 8 6 30 30 H 1.09004 * 109.47101 * 95.33117 * 15 14 2 31 31 H 1.09005 * 109.46787 * 335.34048 * 15 14 2 32 32 H 1.08990 * 109.47281 * 215.33986 * 15 14 2 33 33 H 1.07999 * 123.93615 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1906 6 6 4.1839 -1.4380 2.2072 7 1 3.6469 -1.8425 3.0524 8 6 5.5674 -1.5372 2.1518 9 7 6.2219 -1.0438 1.1220 10 14 6.5003 -2.3708 3.5390 11 1 6.0444 -3.7783 3.6662 12 1 7.9550 -2.3470 3.2415 13 1 6.2430 -1.6502 4.8117 14 7 2.0184 -0.6907 -1.1962 15 6 1.6645 -2.0933 -1.4280 16 6 2.7932 -0.0357 -2.0834 17 8 3.1680 1.0957 -1.8441 18 6 3.1871 -0.6928 -3.3468 19 6 4.0817 -0.1475 -4.2655 20 7 4.2609 -0.9225 -5.2949 21 16 3.3898 -2.2033 -5.1157 22 7 2.7405 -1.8659 -3.7384 23 1 -0.3632 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.7517 -0.1583 2.1369 27 1 1.6054 -1.7198 1.2952 28 1 3.9824 -0.4622 0.4319 29 1 7.1886 -1.1135 1.0831 30 1 0.7913 -2.1449 -2.0785 31 1 1.4370 -2.5727 -0.4759 32 1 2.5016 -2.6056 -1.9020 33 1 4.5696 0.8075 -4.1379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319431484.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:29 Heat of formation + Delta-G solvation = 29.066975 kcal Electronic energy + Delta-G solvation = -18928.528869 eV Core-core repulsion = 15923.727671 eV Total energy + Delta-G solvation = -3004.801197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.24974 -40.41678 -37.87222 -35.95022 -34.77866 -33.27196 -31.75025 -28.58848 -27.71442 -27.37293 -24.88149 -24.20036 -21.94701 -20.45640 -20.35751 -19.11858 -18.25774 -17.49439 -17.23465 -16.75515 -16.23085 -16.06390 -15.34894 -15.11682 -15.03849 -14.08551 -13.89563 -13.67687 -13.62799 -13.27185 -13.21349 -12.92150 -12.74838 -12.54672 -12.42279 -12.19428 -12.17351 -11.84386 -11.75613 -11.68851 -11.04808 -10.92807 -10.20519 -9.60536 -8.99249 -7.92970 -5.22821 -0.63138 0.36957 0.47701 0.68220 1.45166 1.48924 1.54973 1.88042 2.10843 2.55616 3.33274 3.39661 3.57126 3.86855 4.03996 4.10882 4.30367 4.33591 4.46613 4.47556 4.77440 4.84505 4.88920 4.95789 5.04196 5.15808 5.28304 5.35199 5.48205 5.64055 6.26113 6.30055 6.99280 7.33109 8.10047 8.32947 9.29867 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.006322 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.466110 B = 4427.972859 C = 5328.622419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.129 3.871 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.743 5.743 6 C -0.244 4.244 7 H 0.079 0.921 8 C -0.078 4.078 9 N -0.970 5.970 10 Si 0.975 3.025 11 H -0.275 1.275 12 H -0.299 1.299 13 H -0.278 1.278 14 N -0.577 5.577 15 C 0.096 3.904 16 C 0.592 3.408 17 O -0.563 6.563 18 C -0.002 4.002 19 C 0.084 3.916 20 N -0.597 5.597 21 S 0.785 5.215 22 N -0.545 5.545 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.371 0.629 29 H 0.248 0.752 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.567 -3.671 -12.223 17.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.025 3.975 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.385 5.385 6 C -0.375 4.375 7 H 0.097 0.903 8 C -0.270 4.270 9 N -0.620 5.620 10 Si 0.804 3.196 11 H -0.201 1.201 12 H -0.225 1.225 13 H -0.204 1.204 14 N -0.308 5.308 15 C -0.047 4.047 16 C 0.376 3.624 17 O -0.442 6.442 18 C -0.174 4.174 19 C -0.107 4.107 20 N -0.439 5.439 21 S 0.827 5.173 22 N -0.398 5.398 23 H 0.104 0.896 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.203 0.797 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -12.589 -4.835 -13.173 18.852 hybrid contribution 1.445 1.333 1.594 2.531 sum -11.144 -3.501 -11.579 16.448 Atomic orbital electron populations 1.21971 0.90832 1.03718 1.03405 1.21449 0.96302 0.96621 0.83080 0.90506 1.21239 0.84119 0.97942 0.95348 1.42524 1.02010 1.69836 1.24154 1.19625 0.89935 1.28395 0.99571 0.90270 1.25610 0.97584 1.03204 1.00618 1.69869 1.06844 1.52862 1.32450 0.85188 0.76963 0.78584 0.78859 1.20136 1.22513 1.20367 1.47629 1.48490 1.13525 1.21159 1.21948 1.01703 0.79423 1.01650 1.17163 0.78331 0.84848 0.82069 1.90784 1.55887 1.19962 1.77542 1.22166 1.02630 0.92302 1.00264 1.23734 0.97071 1.02484 0.87458 1.72106 1.29509 1.12196 1.30118 1.78599 1.16924 1.16531 1.05254 1.72727 1.30078 1.17732 1.19216 0.89581 0.91711 0.90638 0.94605 0.94547 0.79685 0.94299 0.90248 0.90969 0.91119 0.76887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.19 71.98 0.66 -2.58 16 2 C 0.13 4.34 2.79 44.99 0.13 4.46 16 3 H 0.08 3.00 6.91 -2.39 -0.02 2.98 16 4 C 0.14 5.56 5.52 86.38 0.48 6.04 16 5 N -0.74 -39.01 5.43 -343.45 -1.87 -40.87 16 6 C -0.24 -13.84 9.99 84.03 0.84 -13.00 16 7 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 8 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 9 N -0.97 -61.76 13.06 21.65 0.28 -61.48 16 10 Si 0.98 47.07 29.55 68.60 2.03 49.09 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 N -0.58 -19.84 2.24 -826.09 -1.85 -21.70 16 15 C 0.10 2.74 8.26 127.77 1.06 3.80 16 16 C 0.59 22.55 7.37 86.76 0.64 23.19 16 17 O -0.56 -24.98 16.15 -3.91 -0.06 -25.05 16 18 C 0.00 -0.05 6.52 41.98 0.27 0.22 16 19 C 0.08 2.46 11.23 85.22 0.96 3.42 16 20 N -0.60 -15.42 11.41 -92.46 -1.05 -16.48 16 21 S 0.79 15.58 23.69 -56.49 -1.34 14.25 16 22 N -0.55 -14.41 7.92 -80.62 -0.64 -15.05 16 23 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.07 1.51 7.67 -2.39 -0.02 1.49 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 28 H 0.37 21.64 7.07 -92.71 -0.65 20.99 16 29 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.08 1.82 8.10 -2.39 -0.02 1.80 16 31 H 0.07 2.05 6.54 -2.38 -0.02 2.03 16 32 H 0.07 2.22 5.88 -2.39 -0.01 2.21 16 33 H 0.21 5.91 8.06 -2.91 -0.02 5.89 16 Total: -1.00 -73.35 294.81 1.48 -71.87 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.49 Total: 24.00 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 5.50 Total: 21.41 kcal Atomic # 7 Polarization: -150.44 SS G_CDS: -5.13 Total: -155.58 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.06 Total: -25.05 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 16 Polarization: 15.58 SS G_CDS: -1.34 Total: 14.25 kcal Total: -73.35 1.48 -71.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319431484.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.939 kcal (2) G-P(sol) polarization free energy of solvation -73.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds