Wall clock time and date at job start Mon Mar 30 2020 00:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30834 * 125.95694 * 2 1 4 4 C 1.33241 * 109.82716 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52704 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46886 * 90.00125 * 5 4 3 7 7 N 1.46500 * 109.46943 * 179.97438 * 6 5 4 8 8 C 1.34780 * 120.00005 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99979 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99948 * 180.02562 * 8 7 6 11 11 S 1.81009 * 109.47176 * 179.97438 * 10 8 7 12 12 C 1.76197 * 100.00020 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00221 * 359.97438 * 12 11 10 14 14 C 1.38797 * 119.99805 * 180.02562 * 12 11 10 15 15 N 1.31631 * 120.00324 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99721 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47206 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46633 * 120.00323 * 16 14 12 19 19 H 1.48496 * 109.47112 * 239.99834 * 16 14 12 20 20 N 1.30718 * 108.94820 * 359.97438 * 4 3 2 21 21 N 1.34428 * 125.96273 * 180.02562 * 2 1 3 22 22 H 0.96998 * 126.82131 * 359.97438 * 21 2 1 23 23 H 1.09003 * 109.47179 * 89.97785 * 1 2 3 24 24 H 1.09004 * 109.47263 * 209.97548 * 1 2 3 25 25 H 1.09001 * 109.47979 * 329.97713 * 1 2 3 26 26 H 1.08999 * 109.46976 * 209.99632 * 5 4 3 27 27 H 1.08988 * 109.47287 * 330.00039 * 5 4 3 28 28 H 1.08995 * 109.47562 * 299.99857 * 6 5 4 29 29 H 1.08999 * 109.47590 * 60.00100 * 6 5 4 30 30 H 0.96997 * 120.00480 * 359.97438 * 7 6 5 31 31 H 1.08992 * 109.47511 * 299.99741 * 10 8 7 32 32 H 1.09000 * 109.47451 * 60.00133 * 10 8 7 33 33 H 0.96997 * 120.00177 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5551 0.6889 -0.0006 5 6 4.7371 1.6238 -0.0013 6 6 5.1377 1.9404 1.4410 7 7 6.2871 2.8487 1.4403 8 6 6.8167 3.2665 2.6072 9 8 6.3413 2.8907 3.6578 10 6 7.9986 4.2013 2.6064 11 16 8.4728 4.5758 4.3127 12 6 9.8363 5.6533 4.0219 13 1 10.1332 5.8876 3.0104 14 6 10.5293 6.2001 5.0930 15 7 10.1678 5.9142 6.3259 16 14 11.9753 7.3419 4.7846 17 1 12.1765 7.5020 3.3221 18 1 11.6978 8.6675 5.3938 19 1 13.2006 6.7643 5.3931 20 7 3.6194 -0.6167 -0.0004 21 7 2.2964 -1.0881 -0.0005 22 1 2.0093 -2.0146 -0.0006 23 1 -0.3634 0.0004 -1.0277 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3635 0.8897 0.5142 26 1 5.5739 1.1510 -0.5154 27 1 4.4697 2.5470 -0.5151 28 1 4.3010 2.4130 1.9552 29 1 5.4052 1.0171 1.9548 30 1 6.6676 3.1490 0.6001 31 1 8.8353 3.7289 2.0919 32 1 7.7312 5.1249 2.0931 33 1 10.6519 6.2966 7.0744 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319832132.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:01 Heat of formation + Delta-G solvation = 36.266626 kcal Electronic energy + Delta-G solvation = -16965.591730 eV Core-core repulsion = 13961.102733 eV Total energy + Delta-G solvation = -3004.488997 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.48507 -39.10249 -35.59579 -33.51666 -32.71862 -32.39643 -30.89853 -28.94186 -27.98223 -25.47393 -23.86116 -21.72071 -20.79469 -20.14474 -18.23292 -17.78155 -16.35699 -16.23519 -15.60897 -15.54373 -14.78262 -14.76768 -14.16991 -13.90532 -13.67966 -13.49492 -13.14778 -13.07353 -12.49376 -12.24029 -12.19302 -12.08194 -11.39764 -11.04358 -10.98575 -10.73336 -10.40241 -10.34931 -9.82840 -9.76015 -9.36229 -9.04722 -8.84504 -8.18914 -6.46184 -6.18569 -3.88717 1.22412 2.25832 2.48300 3.07449 3.15802 3.24105 3.30328 3.34810 3.57577 3.84491 4.23453 4.25528 4.44434 4.79631 4.80648 4.90770 5.15858 5.16745 5.23600 5.26673 5.32923 5.66563 5.79822 5.90669 5.95183 5.96875 6.09077 6.18931 6.63537 6.67418 7.63145 7.75242 7.75693 8.38758 8.66622 9.26832 10.88940 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.065193 B = 0.002639 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.392109 B =10608.807915 C =10753.325016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.283 3.717 3 N -0.535 5.535 4 C 0.238 3.762 5 C -0.038 4.038 6 C 0.131 3.869 7 N -0.738 5.738 8 C 0.532 3.468 9 O -0.517 6.517 10 C -0.152 4.152 11 S -0.062 6.062 12 C -0.534 4.534 13 H 0.073 0.927 14 C 0.072 3.928 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.309 5.309 21 N -0.484 5.484 22 H 0.440 0.560 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.399 0.601 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.323 -12.201 -16.748 27.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.004 3.996 3 N -0.264 5.264 4 C -0.046 4.046 5 C -0.078 4.078 6 C 0.005 3.995 7 N -0.393 5.393 8 C 0.318 3.682 9 O -0.391 6.391 10 C -0.303 4.303 11 S 0.165 5.835 12 C -0.682 4.682 13 H 0.092 0.908 14 C -0.137 4.137 15 N -0.503 5.503 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 N -0.138 5.138 21 N -0.202 5.202 22 H 0.286 0.714 23 H 0.111 0.889 24 H 0.102 0.898 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.511 -12.828 -14.793 26.268 hybrid contribution 1.254 0.551 -1.815 2.274 sum -16.257 -12.277 -16.607 26.284 Atomic orbital electron populations 1.20414 0.83517 1.05230 1.04582 1.24446 0.96718 0.82809 0.95598 1.70391 1.01373 1.29496 1.25164 1.23933 0.93125 0.89954 0.97554 1.20101 0.92058 0.97283 0.98335 1.21097 0.89297 0.94401 0.94688 1.45921 1.33812 1.50509 1.09064 1.20307 0.84040 0.80697 0.83127 1.90707 1.61307 1.56080 1.31007 1.23524 0.97830 1.00531 1.08412 1.85419 1.39640 1.61063 0.97405 1.22912 1.17042 1.32720 0.95526 0.90846 1.25002 0.97700 0.96535 0.94445 1.70031 1.39758 1.42482 0.98055 0.86110 0.81046 0.79854 0.78438 1.19611 1.20590 1.20601 1.78054 0.96642 1.12375 1.26769 1.47996 1.04327 1.10092 1.57799 0.71433 0.88940 0.89798 0.88139 0.88658 0.88150 0.91011 0.91361 0.76689 0.89136 0.89095 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.51 36.00 0.38 0.11 16 2 C 0.28 2.37 8.24 -155.70 -1.28 1.08 16 3 N -0.53 -6.24 11.19 -8.16 -0.09 -6.33 16 4 C 0.24 2.82 7.39 -156.85 -1.16 1.66 16 5 C -0.04 -0.37 5.96 -27.88 -0.17 -0.54 16 6 C 0.13 1.70 5.66 -4.04 -0.02 1.68 16 7 N -0.74 -10.18 5.56 -60.30 -0.33 -10.51 16 8 C 0.53 10.26 7.85 -10.98 -0.09 10.17 16 9 O -0.52 -12.23 15.86 5.56 0.09 -12.14 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 11 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 12 C -0.53 -15.36 9.50 30.94 0.29 -15.06 16 13 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -26.46 13.22 55.49 0.73 -25.72 16 16 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 N -0.31 -3.64 12.80 32.42 0.41 -3.23 16 21 N -0.48 -3.96 7.45 32.62 0.24 -3.71 16 22 H 0.44 1.89 8.96 -182.33 -1.63 0.26 16 23 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 25 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.10 0.87 8.14 -51.94 -0.42 0.44 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.40 4.07 8.47 -40.82 -0.35 3.73 16 31 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 32 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 33 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 311.09 15.07 4.69 4.69 Total: -1.00 -38.54 311.09 -8.74 -47.28 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -5.33 Total: -1.16 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -1.92 Total: -1.81 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.97 Total: -49.51 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -38.54 -8.74 -47.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319832132.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.550 kcal (2) G-P(sol) polarization free energy of solvation -38.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds