Wall clock time and date at job start Mon Mar 30 2020 00:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30834 * 125.95694 * 2 1 4 4 C 1.33241 * 109.82716 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52704 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46886 * 90.00125 * 5 4 3 7 7 N 1.46500 * 109.46943 * 179.97438 * 6 5 4 8 8 C 1.34780 * 120.00005 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99979 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99948 * 180.02562 * 8 7 6 11 11 S 1.81009 * 109.47176 * 179.97438 * 10 8 7 12 12 C 1.76197 * 100.00020 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00221 * 359.97438 * 12 11 10 14 14 C 1.38797 * 119.99805 * 180.02562 * 12 11 10 15 15 N 1.31631 * 120.00324 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99721 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47206 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46633 * 120.00323 * 16 14 12 19 19 H 1.48496 * 109.47112 * 239.99834 * 16 14 12 20 20 N 1.30718 * 108.94820 * 359.97438 * 4 3 2 21 21 N 1.34428 * 125.96273 * 180.02562 * 2 1 3 22 22 H 0.96998 * 126.82131 * 359.97438 * 21 2 1 23 23 H 1.09003 * 109.47179 * 89.97785 * 1 2 3 24 24 H 1.09004 * 109.47263 * 209.97548 * 1 2 3 25 25 H 1.09001 * 109.47979 * 329.97713 * 1 2 3 26 26 H 1.08999 * 109.46976 * 209.99632 * 5 4 3 27 27 H 1.08988 * 109.47287 * 330.00039 * 5 4 3 28 28 H 1.08995 * 109.47562 * 299.99857 * 6 5 4 29 29 H 1.08999 * 109.47590 * 60.00100 * 6 5 4 30 30 H 0.96997 * 120.00480 * 359.97438 * 7 6 5 31 31 H 1.08992 * 109.47511 * 299.99741 * 10 8 7 32 32 H 1.09000 * 109.47451 * 60.00133 * 10 8 7 33 33 H 0.96997 * 120.00177 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5551 0.6889 -0.0006 5 6 4.7371 1.6238 -0.0013 6 6 5.1377 1.9404 1.4410 7 7 6.2871 2.8487 1.4403 8 6 6.8167 3.2665 2.6072 9 8 6.3413 2.8907 3.6578 10 6 7.9986 4.2013 2.6064 11 16 8.4728 4.5758 4.3127 12 6 9.8363 5.6533 4.0219 13 1 10.1332 5.8876 3.0104 14 6 10.5293 6.2001 5.0930 15 7 10.1678 5.9142 6.3259 16 14 11.9753 7.3419 4.7846 17 1 12.1765 7.5020 3.3221 18 1 11.6978 8.6675 5.3938 19 1 13.2006 6.7643 5.3931 20 7 3.6194 -0.6167 -0.0004 21 7 2.2964 -1.0881 -0.0005 22 1 2.0093 -2.0146 -0.0006 23 1 -0.3634 0.0004 -1.0277 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3635 0.8897 0.5142 26 1 5.5739 1.1510 -0.5154 27 1 4.4697 2.5470 -0.5151 28 1 4.3010 2.4130 1.9552 29 1 5.4052 1.0171 1.9548 30 1 6.6676 3.1490 0.6001 31 1 8.8353 3.7289 2.0919 32 1 7.7312 5.1249 2.0931 33 1 10.6519 6.2966 7.0744 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319832132.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:01 Heat of formation + Delta-G solvation = 6.620029 kcal Electronic energy + Delta-G solvation = -16966.877303 eV Core-core repulsion = 13961.102733 eV Total energy + Delta-G solvation = -3005.774570 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.20464 -40.60979 -36.75563 -34.57516 -34.45250 -33.39463 -32.04885 -30.15476 -28.70943 -27.65418 -24.93527 -22.41082 -21.94315 -21.26305 -19.81973 -18.89941 -17.78778 -17.45355 -16.86750 -16.80128 -16.58677 -15.87889 -15.64853 -15.00538 -14.75167 -14.66089 -14.27634 -13.82245 -13.64579 -13.55150 -13.14415 -13.08957 -12.90405 -12.80787 -12.57465 -12.47334 -11.70105 -11.18005 -11.14451 -11.12562 -10.99453 -10.52949 -10.25154 -10.17048 -8.65491 -8.33225 -6.11329 0.51864 1.27312 1.43040 1.46978 1.58130 1.61004 1.69174 1.73905 2.26815 2.30555 3.01007 3.05611 3.34302 3.55437 3.82748 3.91194 4.05639 4.11431 4.34504 4.43659 4.54408 4.63800 4.70330 4.88036 4.91217 5.06711 5.21217 5.32080 5.38029 5.44117 6.17496 6.21955 6.50797 7.03264 7.08145 7.24350 8.76364 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.065193 B = 0.002639 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.392109 B =10608.807915 C =10753.325016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.287 3.713 3 N -0.572 5.572 4 C 0.222 3.778 5 C -0.026 4.026 6 C 0.138 3.862 7 N -0.708 5.708 8 C 0.533 3.467 9 O -0.569 6.569 10 C -0.127 4.127 11 S -0.157 6.157 12 C -0.543 4.543 13 H 0.085 0.915 14 C 0.011 3.989 15 N -0.913 5.913 16 Si 1.001 2.999 17 H -0.255 1.255 18 H -0.274 1.274 19 H -0.275 1.275 20 N -0.340 5.340 21 N -0.475 5.475 22 H 0.456 0.544 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.421 0.579 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.499 -12.086 -19.308 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.009 3.991 3 N -0.302 5.302 4 C -0.061 4.061 5 C -0.066 4.066 6 C 0.013 3.987 7 N -0.363 5.363 8 C 0.319 3.681 9 O -0.447 6.447 10 C -0.278 4.278 11 S 0.070 5.930 12 C -0.691 4.691 13 H 0.103 0.897 14 C -0.194 4.194 15 N -0.549 5.549 16 Si 0.822 3.178 17 H -0.179 1.179 18 H -0.200 1.200 19 H -0.200 1.200 20 N -0.170 5.170 21 N -0.195 5.195 22 H 0.305 0.695 23 H 0.131 0.869 24 H 0.130 0.870 25 H 0.117 0.883 26 H 0.132 0.868 27 H 0.136 0.864 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.259 0.741 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.710 -12.746 -17.425 27.924 hybrid contribution 1.152 0.401 -1.102 1.644 sum -16.558 -12.345 -18.527 27.746 Atomic orbital electron populations 1.20660 0.80108 1.06485 1.06209 1.25281 0.98335 0.82036 0.93430 1.70388 1.01704 1.31260 1.26884 1.24181 0.93756 0.90238 0.97950 1.20041 0.92403 0.98118 0.96019 1.21026 0.87968 0.92957 0.96769 1.45591 1.33151 1.49160 1.08409 1.20143 0.83726 0.80440 0.83768 1.90697 1.62784 1.58050 1.33176 1.23359 0.99118 1.02159 1.03173 1.85636 1.40687 1.61850 1.04836 1.23239 1.16977 1.32642 0.96214 0.89707 1.26163 1.00951 0.98264 0.94003 1.70198 1.41473 1.43985 0.99273 0.84876 0.76601 0.77142 0.79132 1.17888 1.19981 1.20008 1.77944 0.98788 1.12602 1.27709 1.47938 1.03294 1.11095 1.57219 0.69549 0.86934 0.87028 0.88347 0.86799 0.86432 0.92765 0.93064 0.74067 0.86800 0.86754 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.51 71.23 0.75 0.40 16 2 C 0.29 4.38 8.24 138.22 1.14 5.52 16 3 N -0.57 -12.87 11.19 -179.73 -2.01 -14.88 16 4 C 0.22 5.09 7.39 138.63 1.03 6.12 16 5 C -0.03 -0.48 5.96 29.85 0.18 -0.30 16 6 C 0.14 3.53 5.66 86.38 0.49 4.01 16 7 N -0.71 -18.40 5.56 -463.06 -2.57 -20.97 16 8 C 0.53 20.30 7.85 87.66 0.69 20.99 16 9 O -0.57 -27.61 15.86 -3.03 -0.05 -27.66 16 10 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 11 S -0.16 -8.87 20.57 -56.49 -1.16 -10.03 16 12 C -0.54 -31.20 9.50 67.95 0.65 -30.56 16 13 H 0.08 4.50 7.80 -2.91 -0.02 4.48 16 14 C 0.01 0.61 5.49 84.86 0.47 1.08 16 15 N -0.91 -56.71 13.22 21.65 0.29 -56.42 16 16 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 17 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 N -0.34 -7.78 12.80 -51.33 -0.66 -8.43 16 21 N -0.48 -7.17 7.45 -50.71 -0.38 -7.54 16 22 H 0.46 3.21 8.96 -213.10 -1.91 1.30 16 23 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 24 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.42 7.31 8.47 -92.71 -0.79 6.53 16 31 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 32 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 33 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -86.72 311.09 -0.24 -86.96 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -1.54 Total: 10.37 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 5.82 Total: 2.65 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -5.33 Total: -108.25 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.05 Total: -27.66 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Total: -86.72 -0.24 -86.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319832132.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.584 kcal (2) G-P(sol) polarization free energy of solvation -86.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds